pycom10g21500
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011360
Physical Location & Seq
Reverse (-)
24094959 .. 24096093
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21500.1

Sequence Viewer

Length: 1020 bp
ATGCAGCAGAAATTGGTCTGGTCTGGTTTTAATCCCCAAAAGATCTTTGAAATCCAACCTCAACCAATCAGATTCAACCAAACTGACTCCCTGTCCACCCATACCATTAAAAACTTCCCAGCCGATGATATTCCAACGGATGAAAAAAAAAACAAACGAACTCTCTCTCCCTCCCTCTCCCAAAAAGCCATGCCATTTTCAGCAGCAGCAGCAGCTCTGCAATCATCTCTCTGCTGCTCTTCTAAATCTACTTCTATTCCCTTCAATTCCCAGGCATCATCATCATCTAATCTAGACACCCAATTGGCTGCAAAGCCCTCTCCCAAAACCCTAATCTCCACTCCGCGACTCTCGACTCCATCCACTCCGTCATCTCCTTCCTCCACTCCAAAGTCATCCACCAAAAGGACCTGGCCAAGATCTTCGGGATGTGCCCCAACATCCTCACCTCCAGCATCAAGTCCGACCGACCTCAACCCGGTTTTCGCCTTCCTCTCTGAAGACCTAAAAGTCCCGGACTACAACTTCCGAATGGTCATCAACAAGTGCCCTAGATTGCTTGCCTCAAGTGTGAAAAACCAGCCCAAACCCGCCCTCTCTTACCTCCAAAGACCGGGATTCAAAGACCTGAATGCCCTAGCCTACCATGACTCTGTGCTGCTGGTTTCCCATGTGGAGAGGACATTGGTCCCCAAGCTGGAGTATTTGGAGCGCTTGGGATTCCCAAGAGAGGAGGCTGTAGGGATGGTGCTGAGGTGCCCTGGATTGCTGACCTTCAGCATTGAGAACAACTTAAAGCCGAAGTTCGAGTACTTTTCGGTGGATATGGGGAAAGGGTTGGAGGAACTGAAGGGGTTTCCGCAGTACTTTGCGTTTAGTTTGGAGAAGAGGGTAAGGCCGAGGCACTTGGAGGTTGTGGAGAGGGGAGTGGAAGTGCCTTTGCCATTGATGCTTAAGAGCACCGATGAGGAGTTTAGGGAGTTGCTCAGGGAATTAGGGGGTGGATCAGATGAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

340

Amino Acids

37.6

Weight (kDa)

9.18

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 169 - 325 4e-30 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 756
AccII CGCG 1 cut(s) 346
AciI CCGC 3 cut(s) 344, 591, 860
AclWI GGATC 1 cut(s) 1012
AcoI YGGCCR 1 cut(s) 413
AcuI CTGAAG 3 cut(s) 519, 760, 869
AfaI GTAC 2 cut(s) 812, 866
AfeI AGCGCT 1 cut(s) 713
AfiI CCNNNNNNNGG 5 cut(s) 405, 478, 613, 697, 730
AflII CTTAAG 1 cut(s) 953
AgsI TTSAA 4 cut(s) 50, 76, 265, 622
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 3 cut(s) 270, 410, 760
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 2 cut(s) 215, 697
AluI AGCT 2 cut(s) 215, 697
Alw21I GWGCWC 1 cut(s) 962
AlwI GGATC 1 cut(s) 1012
Aor51HI AGCGCT 1 cut(s) 713
AoxI GGCC 2 cut(s) 413, 896
ApeKI GCWGC 8 cut(s) 4, 203, 206, 209, 212, 234, 308, 658
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 2 cut(s) 408, 688
AsuC2I CCSGG 3 cut(s) 479, 515, 615
AsuHPI GGTGA 1 cut(s) 438
AvaII GGWCC 2 cut(s) 408, 688
BaeGI GKGCMC 3 cut(s) 436, 551, 761
BalI TGGCCA 1 cut(s) 415
BanI GGYRCC 1 cut(s) 756
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 962
BbvCI CCTCAGC 1 cut(s) 752
BbvI GCAGC 8 cut(s) 16, 215, 218, 221, 221, 224, 295, 645
BccI CCATC 2 cut(s) 367, 739
BciT130I CCWGG 3 cut(s) 272, 412, 762
BcnI CCSGG 3 cut(s) 479, 515, 615
BfaI CTAG 3 cut(s) 293, 552, 638
BfmI CTRYAG 1 cut(s) 738
BfoI RGCGCY 1 cut(s) 715
BfrI CTTAAG 1 cut(s) 953
BglII AGATCT 2 cut(s) 42, 419
BisI GCNGC 8 cut(s) 5, 204, 207, 210, 213, 235, 309, 659
BlsI GCNGC 8 cut(s) 6, 205, 208, 211, 214, 236, 310, 660
BmcAI AGTACT 2 cut(s) 812, 866
Bme1390I CCNGG 6 cut(s) 272, 412, 479, 515, 615, 762
Bme18I GGWCC 2 cut(s) 408, 688
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 408, 688
BmiI GGNNCC 2 cut(s) 690, 758
BmrFI CCNGG 6 cut(s) 272, 412, 479, 515, 615, 762
BmsI GCATC 3 cut(s) 284, 464, 939
BoxI GACNNNNGTC 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 507
BpmI CTGGAG 2 cut(s) 435, 719
Bpu10I CCTNAGC 2 cut(s) 752, 986
BpuEI CTTGAG 1 cut(s) 550
BpuMI CCSGG 3 cut(s) 479, 515, 615
BsaJI CCNNGG 3 cut(s) 270, 760, 899
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 918, 948
Bsc4I CCNNNNNNNGG 5 cut(s) 405, 478, 613, 697, 730
BseBI CCWGG 3 cut(s) 272, 412, 762
BseDI CCNNGG 3 cut(s) 270, 760, 899
BseGI GGATG 6 cut(s) 145, 359, 395, 434, 440, 750
BseLI CCNNNNNNNGG 5 cut(s) 405, 478, 613, 697, 730
BseMII CTCAG 2 cut(s) 743, 1000
BseRI GAGGAG 2 cut(s) 746, 983
BseSI GKGCMC 3 cut(s) 436, 551, 761
BseXI GCAGC 8 cut(s) 16, 215, 218, 221, 221, 224, 295, 645
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 2 cut(s) 415, 898
BshNI GGYRCC 1 cut(s) 756
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 962
BsiSI CCGG 3 cut(s) 479, 515, 614
BslFI GGGAC 2 cut(s) 497, 674
BslI CCNNNNNNNGG 5 cut(s) 405, 478, 613, 697, 730
BsmFI GGGAC 2 cut(s) 497, 674
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 2 cut(s) 415, 898
Bsp1286I GDGCHC 4 cut(s) 436, 551, 761, 962
Bsp143I GATC 3 cut(s) 42, 419, 1004
BspACI CCGC 3 cut(s) 344, 591, 860
BspANI GGCC 2 cut(s) 415, 898
BspCNI CTCAG 2 cut(s) 744, 999
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 690, 758
BspPI GGATC 1 cut(s) 1012
BspQI GCTCTTC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 756
BspTI CTTAAG 1 cut(s) 953
BssECI CCNNGG 3 cut(s) 270, 760, 899
BssMI GATC 3 cut(s) 42, 419, 1004
Bst2UI CCWGG 3 cut(s) 272, 412, 762
Bst6I CTCTTC 2 cut(s) 244, 881
BstAFI CTTAAG 1 cut(s) 953
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 752, 986
BstF5I GGATG 6 cut(s) 145, 359, 395, 434, 440, 750
BstFNI CGCG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 715
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 3 cut(s) 45, 422, 1007
BstMBI GATC 3 cut(s) 42, 419, 1004
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 3 cut(s) 209, 212, 949
BstNI CCWGG 3 cut(s) 272, 412, 762
BstPAI GACNNNNGTC 1 cut(s) 686
BstSCI CCNGG 6 cut(s) 270, 410, 477, 513, 613, 760
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 3 cut(s) 436, 551, 761
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 8 cut(s) 16, 215, 218, 221, 221, 224, 295, 645
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 2 cut(s) 42, 419
BstYI RGATCY 2 cut(s) 42, 419
BsuRI GGCC 2 cut(s) 415, 898
BtsCI GGATG 6 cut(s) 145, 359, 395, 434, 440, 750
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 2 cut(s) 408, 688
Csp6I GTAC 2 cut(s) 811, 865
CviAII CATG 3 cut(s) 190, 647, 671
CviQI GTAC 2 cut(s) 811, 865
DdeI CTNAG 2 cut(s) 752, 986
DpnI GATC 3 cut(s) 44, 421, 1006
DpnII GATC 3 cut(s) 42, 419, 1004
DrdI GACNNNNNNGTC 1 cut(s) 509
DriI GACNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 2 cut(s) 244, 881
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 244, 881
Eco47I GGWCC 2 cut(s) 408, 688
Eco47III AGCGCT 1 cut(s) 713
Eco57I CTGAAG 3 cut(s) 519, 760, 869
EcoO109I RGGNCCY 1 cut(s) 408
EcoRII CCWGG 3 cut(s) 270, 410, 760
FaeI CATG 3 cut(s) 193, 650, 674
FaiI YATR 5 cut(s) 102, 191, 648, 672, 827
FaqI GGGAC 2 cut(s) 497, 674
FatI CATG 3 cut(s) 189, 646, 670
FauI CCCGC 1 cut(s) 598
Fnu4HI GCNGC 8 cut(s) 5, 204, 207, 210, 213, 235, 309, 659
FokI GGATG 6 cut(s) 152, 346, 382, 427, 441, 757
Fsp4HI GCNGC 8 cut(s) 5, 204, 207, 210, 213, 235, 309, 659
FspBI CTAG 3 cut(s) 293, 552, 638
GlaI GCGC 1 cut(s) 713
GluI GCNGC 8 cut(s) 5, 204, 207, 210, 213, 235, 309, 659
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 2 cut(s) 435, 719
HaeII RGCGCY 1 cut(s) 715
HaeIII GGCC 2 cut(s) 415, 898
HapII CCGG 3 cut(s) 479, 515, 614
HhaI GCGC 1 cut(s) 714
Hin1II CATG 3 cut(s) 193, 650, 674
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HinfI GANTC 7 cut(s) 72, 86, 348, 355, 618, 650, 720
HpaII CCGG 3 cut(s) 479, 515, 614
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 5 cut(s) 71, 465, 499, 530, 1009
Hpy188III TCNNGA 3 cut(s) 293, 352, 426
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 5 cut(s) 271, 387, 499, 784, 844
HpyCH4V TGCA 3 cut(s) 4, 220, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 212, 949
HpyF3I CTNAG 2 cut(s) 752, 986
Hsp92II CATG 3 cut(s) 193, 650, 674
HspAI GCGC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 42, 419, 1004
LguI GCTCTTC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 8 cut(s) 16, 215, 218, 221, 221, 224, 295, 645
LweI GCATC 3 cut(s) 284, 464, 939
MaeI CTAG 3 cut(s) 293, 552, 638
MalI GATC 3 cut(s) 44, 421, 1006
MboI GATC 3 cut(s) 42, 419, 1004
MboII GAAGA 4 cut(s) 231, 414, 512, 898
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 2 cut(s) 42, 419
MhlI GDGCHC 4 cut(s) 436, 551, 761, 962
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 4 cut(s) 11, 265, 302, 992
MluNI TGGCCA 1 cut(s) 415
MlyI GAGTC 4 cut(s) 80, 342, 349, 644
MmeI TCCRAC 4 cut(s) 79, 158, 488, 819
Mox20I TGGCCA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 415
MseI TTAA 4 cut(s) 30, 108, 794, 954
Msp20I TGGCCA 1 cut(s) 415
MspCI CTTAAG 1 cut(s) 953
MspI CCGG 3 cut(s) 479, 515, 614
MspR9I CCNGG 6 cut(s) 272, 412, 479, 515, 615, 762
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 3 cut(s) 272, 412, 762
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 3 cut(s) 209, 212, 949
NciI CCSGG 3 cut(s) 479, 515, 615
NdeII GATC 3 cut(s) 42, 419, 1004
NlaIII CATG 3 cut(s) 193, 650, 674
NlaIV GGNNCC 2 cut(s) 690, 758
NmeAIII GCCGAG 1 cut(s) 924
PciSI GCTCTTC 1 cut(s) 244
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 3 cut(s) 72, 618, 720
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 8 cut(s) 6, 205, 208, 211, 214, 236, 310, 660
PleI GAGTC 4 cut(s) 80, 342, 349, 644
PpsI GAGTC 4 cut(s) 80, 342, 349, 644
PpuMI RGGWCCY 1 cut(s) 408
PshAI GACNNNNGTC 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 270, 410, 760
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 3 cut(s) 270, 410, 760
PspN4I GGNNCC 2 cut(s) 690, 758
PspPI GGNCC 2 cut(s) 408, 688
PspPPI RGGWCCY 1 cut(s) 408
PsuI RGATCY 2 cut(s) 42, 419
RsaI GTAC 2 cut(s) 812, 866
RsaNI GTAC 2 cut(s) 811, 865
SapI GCTCTTC 1 cut(s) 244
SaqAI TTAA 4 cut(s) 30, 108, 794, 954
SatI GCNGC 8 cut(s) 5, 204, 207, 210, 213, 235, 309, 659
Sau3AI GATC 3 cut(s) 42, 419, 1004
Sau96I GGNCC 2 cut(s) 408, 688
ScaI AGTACT 2 cut(s) 812, 866
SchI GAGTC 4 cut(s) 80, 342, 349, 644
ScrFI CCNGG 6 cut(s) 272, 412, 479, 515, 615, 762
SduI GDGCHC 4 cut(s) 436, 551, 761, 962
SfaNI GCATC 3 cut(s) 284, 464, 939
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 2 cut(s) 408, 688
SmlI CTYRAG 2 cut(s) 565, 953
SmoI CTYRAG 2 cut(s) 565, 953
Sse9I AATT 4 cut(s) 11, 265, 302, 992
SsiI CCGC 3 cut(s) 344, 591, 860
SspMI CTAG 3 cut(s) 293, 552, 638
StyD4I CCNGG 6 cut(s) 270, 410, 477, 513, 613, 760
TaqI TCGA 2 cut(s) 353, 807
TaqII GACCGA 1 cut(s) 482
TasI AATT 4 cut(s) 11, 265, 302, 992
TatI WGTACW 2 cut(s) 810, 864
TfiI GAWTC 3 cut(s) 72, 618, 720
Tru1I TTAA 4 cut(s) 30, 108, 794, 954
Tru9I TTAA 4 cut(s) 30, 108, 794, 954
TseI GCWGC 8 cut(s) 4, 203, 206, 209, 212, 234, 308, 658
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 152, 357
Vha464I CTTAAG 1 cut(s) 953
VpaK11BI GGWCC 2 cut(s) 408, 688
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 3 cut(s) 293, 552, 638
ZrmI AGTACT 2 cut(s) 812, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.