pycom05g26050
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011360
Physical Location & Seq
Reverse (-)
27305798 .. 27306712
915 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26050.1

Sequence Viewer

Length: 915 bp
ATGCCAGTTTCAGCAGCTGCAGCTCTGCAGTCATCTCTCTGCTTCTCTTCTAACAATCCATCATCTTCTCCTGATTTGGACACCCAATTGGCTGCAAAACCCAAAGGCCTGCTCCACAAGCATCCTCTCTACACACCCACCCACACCAAACTCTCCCTCCAATTCAAAGAGAAGATCCTCTGCCTTGAAATCATGGGAGTCGATGCAGGCAAAGCCCTCTCCCAAAACCCTAATCTCCACTCCGCGACTCTTGACTCCATCCACTCCATAATCTCCTTCCTCCACTCCAAAGGCATCCACCAAAAGGACCTGGCCAAGATCTTTGGGATGTGCCCCAGCATCCTCACCTCCAGCATCAAGTCCGACCTCCACCCAGTTTTCGCCTTCCTCTCCCAAGACCTAAAAGTCCCGGATTGCTACTTCAGAAGGGTCATCAACAAGTGCCCCAGATTGCTTGCTTCAAGTGTGAAGGACCAGCTCAAACCAGCACTTCTTTACCTCCAGAGCCTTGGGTTCAAAGACCTAAATGCACTAGCCTACCATGACCCTGTGCTGCTGGTTTCCAATGTGGAGAGGACATTGATTCCCAAGCTGGAGTACTTGGAGGGTTTGGGATTCCCAAGGGAGGAGACTCTGGGGATGGTGCTGAGGTGCCCTGGACTGCTGACCTTCAGCATCGAGAACAACTTCAAGCCAAAATTCGACTACTTTTCGGTGGAGATGGGAAAAGGGTTGGAGGAATTGAAGGGGTTTCCGCAGTATTTTACGTTTAGTTTGGAGAAGAGGATAAAGCCGAGGCACATGGAAGTTGTGGAGAGGGGAGTGGAATTGCCTTTGCCATTGATGCTTAAGAGCACTGATGAGGAGTTTAGGGAGTTGCTCAGGGAATTAGGGGGGGTGGAGGATGAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

305

Amino Acids

34.08

Weight (kDa)

7.17

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 56 - 173 6.9e-12 mTERF
mTERF PF02536 183 - 290 2.4e-29 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 651
AccII CGCG 1 cut(s) 245
AciI CCGC 2 cut(s) 243, 755
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 2 cut(s) 406, 655
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 2 cut(s) 304, 625
AflII CTTAAG 1 cut(s) 848
AgsI TTSAA 6 cut(s) 166, 188, 462, 517, 691, 745
AjnI CCWGG 2 cut(s) 309, 655
AluBI AGCT 4 cut(s) 17, 23, 478, 592
AluI AGCT 4 cut(s) 17, 23, 478, 592
Alw21I GWGCWC 1 cut(s) 857
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 2 cut(s) 106, 312
ApeKI GCWGC 5 cut(s) 14, 17, 20, 92, 553
ApoI RAATTY 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 686
AspS9I GGNCC 2 cut(s) 307, 472
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 2 cut(s) 307, 472
BaeGI GKGCMC 3 cut(s) 335, 446, 656
BalI TGGCCA 1 cut(s) 314
BanI GGYRCC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 857
BbvCI CCTCAGC 1 cut(s) 647
BbvI GCAGC 5 cut(s) 4, 26, 32, 79, 540
BccI CCATC 4 cut(s) 67, 266, 634, 715
BciT130I CCWGG 2 cut(s) 311, 657
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 2 cut(s) 18, 26
BfrI CTTAAG 1 cut(s) 848
BglII AGATCT 1 cut(s) 318
BisI GCNGC 5 cut(s) 15, 18, 21, 93, 554
BlsI GCNGC 5 cut(s) 16, 19, 22, 94, 555
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 311, 410, 657
Bme18I GGWCC 2 cut(s) 307, 472
BmgT120I GGNCC 2 cut(s) 307, 472
BmiI GGNNCC 1 cut(s) 653
BmrFI CCNGG 3 cut(s) 311, 410, 657
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 7 cut(s) 130, 193, 303, 348, 363, 684, 834
BmuI ACTGGG 1 cut(s) 368
BpmI CTGGAG 3 cut(s) 334, 485, 614
Bpu10I CCTNAGC 2 cut(s) 647, 881
BpuMI CCSGG 1 cut(s) 410
BsaJI CCNNGG 4 cut(s) 508, 620, 655, 794
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 625
Bse1I ACTGG 2 cut(s) 5, 374
BseBI CCWGG 2 cut(s) 311, 657
BseDI CCNNGG 4 cut(s) 508, 620, 655, 794
BseGI GGATG 7 cut(s) 121, 258, 294, 333, 339, 645, 910
BseLI CCNNNNNNNGG 2 cut(s) 304, 625
BseMII CTCAG 2 cut(s) 638, 895
BseNI ACTGG 2 cut(s) 5, 374
BseRI GAGGAG 2 cut(s) 641, 878
BseSI GKGCMC 3 cut(s) 335, 446, 656
BseXI GCAGC 5 cut(s) 4, 26, 32, 79, 540
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 108, 314
BshNI GGYRCC 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 857
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 304, 625
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 2 cut(s) 108, 314
Bsp1286I GDGCHC 4 cut(s) 335, 446, 656, 857
Bsp143I GATC 2 cut(s) 174, 318
BspACI CCGC 2 cut(s) 243, 755
BspANI GGCC 2 cut(s) 108, 314
BspCNI CTCAG 2 cut(s) 639, 894
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 653
BspMAI CTGCAG 2 cut(s) 22, 30
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 651
BspTI CTTAAG 1 cut(s) 848
BsrI ACTGG 2 cut(s) 5, 374
BssECI CCNNGG 4 cut(s) 508, 620, 655, 794
BssMI GATC 2 cut(s) 174, 318
BssT1I CCWWGG 2 cut(s) 508, 620
Bst2UI CCWGG 2 cut(s) 311, 657
Bst6I CTCTTC 2 cut(s) 52, 776
BstAFI CTTAAG 1 cut(s) 848
BstC8I GCNNGC 3 cut(s) 110, 208, 456
BstDEI CTNAG 2 cut(s) 647, 881
BstF5I GGATG 7 cut(s) 121, 258, 294, 333, 339, 645, 910
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 2 cut(s) 177, 321
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 2 cut(s) 174, 318
BstMWI GCNNNNNNNGC 4 cut(s) 20, 118, 212, 844
BstNI CCWGG 2 cut(s) 311, 657
BstSCI CCNGG 3 cut(s) 309, 408, 655
BstSFI CTRYAG 2 cut(s) 18, 26
BstSLI GKGCMC 3 cut(s) 335, 446, 656
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 5 cut(s) 4, 26, 32, 79, 540
BstX2I RGATCY 2 cut(s) 174, 318
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 2 cut(s) 174, 318
BsuRI GGCC 2 cut(s) 108, 314
BtsCI GGATG 7 cut(s) 121, 258, 294, 333, 339, 645, 910
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 3 cut(s) 110, 208, 456
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 307, 472
Csp6I GTAC 1 cut(s) 598
CviAII CATG 3 cut(s) 193, 542, 802
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 2 cut(s) 647, 881
DpnI GATC 2 cut(s) 176, 320
DpnII GATC 2 cut(s) 174, 318
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 52, 776
EarI CTCTTC 2 cut(s) 52, 776
Eco130I CCWWGG 2 cut(s) 508, 620
Eco147I AGGCCT 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 307, 472
Eco57I CTGAAG 2 cut(s) 406, 655
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 309, 655
EcoT14I CCWWGG 2 cut(s) 508, 620
ErhI CCWWGG 2 cut(s) 508, 620
FaeI CATG 3 cut(s) 196, 545, 805
FaiI YATR 4 cut(s) 194, 269, 543, 803
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 192, 541, 801
Fnu4HI GCNGC 5 cut(s) 15, 18, 21, 93, 554
FokI GGATG 6 cut(s) 108, 245, 281, 326, 340, 652
Fsp4HI GCNGC 5 cut(s) 15, 18, 21, 93, 554
FspBI CTAG 1 cut(s) 533
GluI GCNGC 5 cut(s) 15, 18, 21, 93, 554
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 3 cut(s) 334, 485, 614
HaeIII GGCC 2 cut(s) 108, 314
HapII CCGG 1 cut(s) 410
Hin1II CATG 3 cut(s) 196, 545, 805
HinfI GANTC 6 cut(s) 198, 247, 254, 583, 615, 631
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 364, 425
Hpy188III TCNNGA 4 cut(s) 71, 251, 502, 679
HpyAV CCTTC 6 cut(s) 286, 394, 420, 463, 679, 739
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 5 cut(s) 20, 28, 95, 206, 530
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 118, 212, 844
HpyF3I CTNAG 2 cut(s) 647, 881
HpySE526I ACGT 1 cut(s) 767
Hsp92II CATG 3 cut(s) 196, 545, 805
Kzo9I GATC 2 cut(s) 174, 318
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 5 cut(s) 4, 26, 32, 79, 540
LweI GCATC 7 cut(s) 130, 193, 303, 348, 363, 684, 834
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 767
MalI GATC 2 cut(s) 176, 320
MboI GATC 2 cut(s) 174, 318
MboII GAAGA 4 cut(s) 39, 57, 184, 793
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 2 cut(s) 174, 318
MhlI GDGCHC 4 cut(s) 335, 446, 656, 857
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 6 cut(s) 86, 161, 698, 740, 827, 887
MluNI TGGCCA 1 cut(s) 314
MlyI GAGTC 4 cut(s) 207, 241, 248, 625
MmeI TCCRAC 2 cut(s) 387, 714
Mox20I TGGCCA 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 314
MseI TTAA 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 3 cut(s) 311, 410, 657
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 2 cut(s) 311, 657
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 20, 118, 212, 844
NciI CCSGG 1 cut(s) 410
NdeII GATC 2 cut(s) 174, 318
NlaIII CATG 3 cut(s) 196, 545, 805
NlaIV GGNNCC 1 cut(s) 653
NmeAIII GCCGAG 1 cut(s) 819
PceI AGGCCT 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 2 cut(s) 583, 615
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 5 cut(s) 16, 19, 22, 94, 555
PleI GAGTC 4 cut(s) 206, 241, 248, 625
PpsI GAGTC 4 cut(s) 206, 241, 248, 625
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 309, 655
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 309, 655
PspN4I GGNNCC 1 cut(s) 653
PspPI GGNCC 2 cut(s) 307, 472
PspPPI RGGWCCY 1 cut(s) 307
PstI CTGCAG 2 cut(s) 22, 30
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 2 cut(s) 174, 318
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 5 cut(s) 15, 18, 21, 93, 554
Sau3AI GATC 2 cut(s) 174, 318
Sau96I GGNCC 2 cut(s) 307, 472
ScaI AGTACT 1 cut(s) 599
SchI GAGTC 4 cut(s) 207, 241, 248, 625
ScrFI CCNGG 3 cut(s) 311, 410, 657
SduI GDGCHC 4 cut(s) 335, 446, 656, 857
SfaNI GCATC 7 cut(s) 130, 193, 303, 348, 363, 684, 834
SfcI CTRYAG 2 cut(s) 18, 26
SinI GGWCC 2 cut(s) 307, 472
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 6 cut(s) 86, 161, 698, 740, 827, 887
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 2 cut(s) 243, 755
SspMI CTAG 1 cut(s) 533
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 309, 408, 655
StyI CCWWGG 2 cut(s) 508, 620
TaiI ACGT 1 cut(s) 770
TaqI TCGA 3 cut(s) 201, 678, 702
TasI AATT 6 cut(s) 86, 161, 698, 740, 827, 887
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 2 cut(s) 583, 615
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 1 cut(s) 862
TseI GCWGC 5 cut(s) 14, 17, 20, 92, 553
TspRI CASTG 1 cut(s) 862
Vha464I CTTAAG 1 cut(s) 848
VpaK11BI GGWCC 2 cut(s) 307, 472
XapI RAATTY 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.