Prupe.4G085200_v2.0.a1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011360
Physical Location & Seq
Forward (+)
4178689 .. 4180328
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G085200.1

Sequence Viewer

Length: 936 bp
ATGCCATTAACAGCAGCAGCAGCTTTGCAGTCATCTCTGTGCTTCTCTTCTCATAATCCTCCACCATCATCATCTACTGCCTCCAATTCCCAGGCATTAAACACAAGCACAAACACCCAATTGGCTGCAAAACCCAAAAGCCTCCTCCAAAAGCACCCTCTCTACACACCCACCCACACCAAACTCTCCCTCCAATTCAAAGAGAAAATCCTATGCCTTGAAATCATGGGAGTTGATGCAGGCAAGGCACTCTCCCAAAACCCTTCTCTCCACACAGCCTCTCTTCACTCCATCCACTCCATAATCTCCTTCCTCCAATCCAAAGGCATCCACCAAAAGGACCTGCCCAAGATCTTTGGCATGTGCCCCAACATTCTCACCTCCAGCATCAAAAGTGACCTCAACCCAGTTTTCATCTTCCTCTCAGAAGACCTCAAAGTCCCAGAACACAGCTTCAGAAAGGTCATCAACAAGTGCCCCAGATTGCTTGCTTGCAGTGTAATAGACCAGCTCAAGCCAGCTCTGTTTTATCTTCAGAGACTTGGGTTCAAGGACCTGGATGCCCTGGCTTACCATGACTCTGTGCTGCTGGTTTCAAGTGTGGAGAAAACCCTAATCCCCAAACTGGAGTTTTTGCAGAGCTTAGGATTCCCAAGAGATGAGGCTGTGGGGATGGTGCTGAGGTGTCCTGGACTGCTAACTTTCAGCATTGAGAATAACTTCACGCCAAAGTTTGAGTACTTTTCTGTGGACATGGGGAAGAAGTTGGAGGAGCTGAAGCAATTTCCTCAGTACTTTGCTTTCAGCCTGGAGAAGAGGATAAAGCCAAGGCACAAGGAGGTTGTGCAGAGGGGAGTGGAAGTGCCTCTGCCATTGATGCTAAAGAGCACTGATGATGAGTTCAGGGAGTTGCTGAGGGAATTTCGGGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

312

Amino Acids

34.82

Weight (kDa)

9.12

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34620
fragaria_vesca FvH4_3g05090
prunus_persica Prupe.4G085200_v2.0.a1
pyrus_communis pycom05g26050 pycom10g21500
rosa_chinensis RchiOBHm_Chr5g0014781
rosa_laevigata RLG00000032140
rosa_multiflora Rmu_co8433651.1_g000001 Rmu_sc0013610.1_g000009
rosa_roxburghii Rroxscaffold_1G00061760
rosa_rugosa Rorug05G0020800
rosa_samantha Rh5AG116300 Rh5AG116600 Rh5AG116700 Rh5BG113100 Rh5CG124800 Rh5DG112500 Rh5DG112900 Rh5DG113000
rosa_wichuraiana Rw5G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 351
AcsI RAATTY 1 cut(s) 920
AcuI CTGAAG 3 cut(s) 439, 518, 797
AfaI GTAC 2 cut(s) 740, 794
AfiI CCNNNNNNNGG 2 cut(s) 337, 625
AgsI TTSAA 4 cut(s) 199, 221, 550, 597
AjnI CCWGG 5 cut(s) 90, 555, 564, 688, 807
AluBI AGCT 6 cut(s) 23, 453, 511, 521, 642, 775
AluI AGCT 6 cut(s) 23, 453, 511, 521, 642, 775
Alw21I GWGCWC 1 cut(s) 890
Alw26I GTCTC 1 cut(s) 532
ApeKI GCWGC 5 cut(s) 14, 17, 20, 125, 586
ApoI RAATTY 1 cut(s) 920
Asp700I GAANNNNTTC 1 cut(s) 719
AspS9I GGNCC 2 cut(s) 340, 553
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 2 cut(s) 340, 553
BaeGI GKGCMC 2 cut(s) 368, 479
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 890
BbvCI CCTCAGC 2 cut(s) 680, 914
BbvI GCAGC 5 cut(s) 26, 29, 32, 112, 573
BccI CCATC 3 cut(s) 73, 299, 667
BciT130I CCWGG 5 cut(s) 92, 557, 566, 690, 809
BcoDI GTCTC 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 351
BisI GCNGC 5 cut(s) 15, 18, 21, 126, 587
BlsI GCNGC 5 cut(s) 16, 19, 22, 127, 588
BmcAI AGTACT 2 cut(s) 740, 794
Bme1390I CCNGG 5 cut(s) 92, 557, 566, 690, 809
Bme18I GGWCC 2 cut(s) 340, 553
BmgT120I GGNCC 2 cut(s) 340, 553
BmrFI CCNGG 5 cut(s) 92, 557, 566, 690, 809
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 5 cut(s) 226, 336, 396, 550, 867
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 3 cut(s) 367, 647, 830
Bpu10I CCTNAGC 3 cut(s) 643, 680, 914
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 90, 564, 827
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 846, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 625
Bse1I ACTGG 2 cut(s) 407, 630
BseBI CCWGG 5 cut(s) 92, 557, 566, 690, 809
BseDI CCNNGG 3 cut(s) 90, 564, 827
BseGI GGATG 4 cut(s) 291, 327, 565, 678
BseLI CCNNNNNNNGG 2 cut(s) 337, 625
BseMII CTCAG 4 cut(s) 438, 671, 803, 905
BseNI ACTGG 2 cut(s) 407, 630
BseRI GAGGAG 2 cut(s) 134, 785
BseSI GKGCMC 2 cut(s) 368, 479
BseXI GCAGC 5 cut(s) 26, 29, 32, 112, 573
BsgI GTGCAG 1 cut(s) 866
BsiHKAI GWGCWC 1 cut(s) 890
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 337, 625
BsmAI GTCTC 1 cut(s) 532
BsmFI GGGAC 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 368, 479, 890
Bsp143I GATC 1 cut(s) 351
BspCNI CTCAG 4 cut(s) 437, 672, 802, 906
BspMI ACCTGC 1 cut(s) 351
BsrI ACTGG 2 cut(s) 407, 630
BssECI CCNNGG 3 cut(s) 90, 564, 827
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 827
Bst2UI CCWGG 5 cut(s) 92, 557, 566, 690, 809
Bst6I CTCTTC 3 cut(s) 52, 288, 809
BstC8I GCNNGC 4 cut(s) 241, 489, 493, 519
BstDEI CTNAG 5 cut(s) 424, 643, 680, 789, 914
BstF5I GGATG 4 cut(s) 291, 327, 565, 678
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 3 cut(s) 20, 245, 877
BstNI CCWGG 5 cut(s) 92, 557, 566, 690, 809
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 5 cut(s) 90, 555, 564, 688, 807
BstSLI GKGCMC 2 cut(s) 368, 479
BstV1I GCAGC 5 cut(s) 26, 29, 32, 112, 573
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BtsCI GGATG 4 cut(s) 291, 327, 565, 678
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 2 cut(s) 502, 888
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 4 cut(s) 241, 489, 493, 519
Cfr13I GGNCC 2 cut(s) 340, 553
Csp6I GTAC 2 cut(s) 739, 793
CviAII CATG 4 cut(s) 226, 361, 575, 754
CviQI GTAC 2 cut(s) 739, 793
DdeI CTNAG 5 cut(s) 424, 643, 680, 789, 914
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 3 cut(s) 52, 288, 809
EarI CTCTTC 3 cut(s) 52, 288, 809
Eco130I CCWWGG 1 cut(s) 827
Eco47I GGWCC 2 cut(s) 340, 553
Eco57I CTGAAG 3 cut(s) 439, 518, 797
EcoO109I RGGNCCY 2 cut(s) 340, 553
EcoRII CCWGG 5 cut(s) 90, 555, 564, 688, 807
EcoT14I CCWWGG 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 827
FaeI CATG 4 cut(s) 229, 364, 578, 757
FaiI YATR 7 cut(s) 54, 214, 227, 302, 362, 576, 755
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 225, 360, 574, 753
Fnu4HI GCNGC 5 cut(s) 15, 18, 21, 126, 587
FokI GGATG 4 cut(s) 278, 314, 572, 685
Fsp4HI GCNGC 5 cut(s) 15, 18, 21, 126, 587
GluI GCNGC 5 cut(s) 15, 18, 21, 126, 587
GsuI CTGGAG 3 cut(s) 367, 647, 830
Hin1II CATG 4 cut(s) 229, 364, 578, 757
HinfI GANTC 2 cut(s) 578, 648
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 3 cut(s) 427, 458, 537
Hpy8I GTNNAC 1 cut(s) 751
HpyAV CCTTC 2 cut(s) 273, 319
HpyCH4V TGCA 6 cut(s) 28, 128, 239, 495, 637, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 245, 877
HpyF3I CTNAG 5 cut(s) 424, 643, 680, 789, 914
Hsp92II CATG 4 cut(s) 229, 364, 578, 757
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 772
Lsp1109I GCAGC 5 cut(s) 26, 29, 32, 112, 573
LweI GCATC 5 cut(s) 226, 336, 396, 550, 867
MaeIII GTNAC 1 cut(s) 395
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 7 cut(s) 39, 275, 409, 440, 524, 772, 826
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 3 cut(s) 368, 479, 890
MluCI AATT 5 cut(s) 85, 119, 194, 782, 920
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 747
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 2 cut(s) 8, 98
MslI CAYNNNNRTG 1 cut(s) 37
MspR9I CCNGG 5 cut(s) 92, 557, 566, 690, 809
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 5 cut(s) 92, 557, 566, 690, 809
MwoI GCNNNNNNNGC 3 cut(s) 20, 245, 877
NdeII GATC 1 cut(s) 351
NlaIII CATG 4 cut(s) 229, 364, 578, 757
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 1 cut(s) 648
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 5 cut(s) 16, 19, 22, 127, 588
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PpuMI RGGWCCY 2 cut(s) 340, 553
Psp5II RGGWCCY 2 cut(s) 340, 553
Psp6I CCWGG 5 cut(s) 90, 555, 564, 688, 807
PspGI CCWGG 5 cut(s) 90, 555, 564, 688, 807
PspPI GGNCC 2 cut(s) 340, 553
PspPPI RGGWCCY 2 cut(s) 340, 553
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 2 cut(s) 740, 794
RsaNI GTAC 2 cut(s) 739, 793
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 2 cut(s) 8, 98
SatI GCNGC 5 cut(s) 15, 18, 21, 126, 587
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 2 cut(s) 340, 553
ScaI AGTACT 2 cut(s) 740, 794
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 5 cut(s) 92, 557, 566, 690, 809
SduI GDGCHC 3 cut(s) 368, 479, 890
SfaNI GCATC 5 cut(s) 226, 336, 396, 550, 867
SinI GGWCC 2 cut(s) 340, 553
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 85, 119, 194, 782, 920
StyD4I CCNGG 5 cut(s) 90, 555, 564, 688, 807
StyI CCWWGG 1 cut(s) 827
TasI AATT 5 cut(s) 85, 119, 194, 782, 920
TatI WGTACW 2 cut(s) 738, 792
TfiI GAWTC 1 cut(s) 648
Tru1I TTAA 2 cut(s) 8, 98
Tru9I TTAA 2 cut(s) 8, 98
TscAI CASTG 2 cut(s) 502, 895
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 5 cut(s) 14, 17, 20, 125, 586
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 403
TspRI CASTG 2 cut(s) 502, 895
VpaK11BI GGWCC 2 cut(s) 340, 553
XapI RAATTY 1 cut(s) 920
XceI RCATGY 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 719
ZrmI AGTACT 2 cut(s) 740, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.