Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Forward (+)

14898256 .. 14899750

Gene Structure 1495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGGTTTTGGAAGCTTCTCTCTCCATTTTCTCCTTCTCTTCTTCTTCTTCCTCTTCAAAACCTTATCTCTTTTCTAAACGCTCTTCTTCCTTAAAACTTACTGCCCTTAGTCTTCGAATTCCCAGCAATCTCTCTCCCGTCTTCTCTCTACGTTCCGGCAGCGATAACTCACGGCGGCTCGTCTCCGTACTCTGTTCCGTCGCGGAGAAAGAAACATCGGCGGATGAAGAAACGTCGCAGGAGGAGAAGACTGAAGAAACCCAGAATTCAAATCTGAAAAGGAAGCTTTTTGTATTCAATCTTCCTTGGTCTATGAGTGTAAATGACATTTCCGAGCTCTTTGGACAATGTGGGACTGTGAACAATGTCGAGATTATAAGGCAAAAAGATGGAAAGAACCGAGGATTTGCTTTTGTAACTATGGCTTCTGGAGAAGAAGCTCAAGCAGCTATTGATAAGTTCGATACTTTTCAAGTGTCAGGGAGGATCATTAGCGTAAGCTTTGCAAGAAGGTTCAAGAAGCCTACTCCGAAATCACCGAACGATCTTCCTTCTCCTGCCCCTGGAGACACTCGTCACAAACTCTACGTATCTAATCTCGCTTGGAAAGCAAGATCAACACATCTCCGAGAGCTTTTCACTGCTGCAGATTTCAACCCGGTCTCAGCTCGGGTTGTTTTCGCTGACCCCGAAGGTAGATCTTCTGGCTATGGCTTTGTCTCATTTGCTACTAGAGAAGAAGCTGAGAATGCAATCACAAAACTCAATGGGAAGGAGATAATGGGTAGACCTATCACTCTAAAGTTTAGTCTGAGAAGCGCCAGTGAATCTGAAGATGGTGACAGTGTAGAAGCTAACAACGCTTCTGAAGATGGAGACACTGTAGAAGACAAAAACACTTCCGAAGAAAACATTGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

308

Amino Acids

33.79

Weight (kDa)

5.55

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	97 - 165	2.3e-17	RNA recognition motif
RRM_1	PF00076	196 - 266	6.8e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	790
AccII	CGCG	1 cut(s)	206
AciI	CCGC	4 cut(s)	5, 178, 206, 224
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	120, 268
AcuI	CTGAAG	3 cut(s)	276, 855, 891
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	6 cut(s)	60, 273, 301, 476, 520, 658
AjnI	CCWGG	1 cut(s)	565
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	5 cut(s)	190, 564, 670, 727, 873
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	672
ApeKI	GCWGC	3 cut(s)	162, 449, 647
ApoI	RAATTY	2 cut(s)	120, 268
AspLEI	GCGC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	531, 854
AsuII	TTCGAA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
BbsI	GAAGAC	4 cut(s)	107, 136, 257, 897
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	174, 461, 634
BccI	CCATC	3 cut(s)	386, 833, 869
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	5 cut(s)	190, 564, 670, 727, 873
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	2 cut(s)	648, 885
BfoI	RGCGCY	1 cut(s)	825
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	4 cut(s)	163, 179, 450, 648
BlsI	GCNGC	4 cut(s)	164, 180, 451, 649
Bme1390I	CCNGG	2 cut(s)	567, 662
BmeT110I	CYCGRG	1 cut(s)	672
BmrFI	CCNGG	2 cut(s)	567, 662
BoxI	GACNNNNGTC	1 cut(s)	576
BpiI	GAAGAC	4 cut(s)	107, 136, 257, 897
BpmI	CTGGAG	2 cut(s)	453, 588
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	662
BsaAI	YACGTR	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	3 cut(s)	308, 403, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	308, 403, 565
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	3 cut(s)	681, 738, 806
BseNI	ACTGG	1 cut(s)	825
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	174, 461, 634
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	159, 662
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	5 cut(s)	190, 564, 670, 727, 873
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	757
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	672
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	489, 547, 617, 701
BspACI	CCGC	4 cut(s)	5, 178, 206, 224
BspCNI	CTCAG	3 cut(s)	680, 739, 807
BspFNI	CGCG	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	497
BspQI	GCTCTTC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	825
BssECI	CCNNGG	3 cut(s)	308, 403, 565
BssMI	GATC	4 cut(s)	489, 547, 617, 701
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	361, 848, 886
Bst6I	CTCTTC	3 cut(s)	46, 61, 91
BstBAI	YACGTR	1 cut(s)	592
BstBI	TTCGAA	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	110, 667, 747, 815
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	4 cut(s)	492, 550, 620, 704
BstMAI	GTCTC	5 cut(s)	190, 564, 670, 727, 873
BstMBI	GATC	4 cut(s)	489, 547, 617, 701
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 611, 752, 863
BstNI	CCWGG	1 cut(s)	567
BstPAI	GACNNNNGTC	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	565, 660
BstSFI	CTRYAG	2 cut(s)	648, 885
BstSNI	TACGTA	1 cut(s)	592
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	174, 461, 634
BstV2I	GAAGAC	4 cut(s)	107, 136, 257, 897
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	4 cut(s)	642, 832, 853, 882
CfoI	GCGC	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	191
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	4 cut(s)	110, 667, 747, 815
DpnI	GATC	4 cut(s)	491, 549, 619, 703
DpnII	GATC	4 cut(s)	489, 547, 617, 701
Eam1104I	CTCTTC	3 cut(s)	46, 61, 91
EarI	CTCTTC	3 cut(s)	46, 61, 91
EciI	GGCGGA	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	340
Eco105I	TACGTA	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	670
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	3 cut(s)	276, 855, 891
Eco88I	CYCGRG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	2 cut(s)	120, 268
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	190
FaiI	YATR	4 cut(s)	317, 380, 425, 714
FaqI	GGGAC	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	163, 179, 450, 648
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	163, 179, 450, 648
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	4 cut(s)	163, 179, 450, 648
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	2 cut(s)	453, 588
HaeII	RGCGCY	1 cut(s)	825
HapII	CCGG	2 cut(s)	159, 662
HhaI	GCGC	1 cut(s)	824
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HindIII	AAGCTT	3 cut(s)	15, 287, 502
HinfI	GANTC	1 cut(s)	830
HpaII	CCGG	2 cut(s)	159, 662
HphI	GGTGA	2 cut(s)	531, 854
Hpy166II	GTNNAC	2 cut(s)	364, 791
Hpy188I	TCNGA	8 cut(s)	279, 337, 534, 632, 816, 835, 871, 907
Hpy188III	TCNNGA	3 cut(s)	373, 432, 520
Hpy8I	GTNNAC	2 cut(s)	364, 791
Hpy99I	CGWCG	2 cut(s)	206, 241
HpyAV	CCTTC	5 cut(s)	46, 507, 564, 689, 769
HpyCH4III	ACNGT	3 cut(s)	361, 848, 886
HpyCH4IV	ACGT	3 cut(s)	154, 236, 591
HpyCH4V	TGCA	3 cut(s)	509, 650, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 611, 752, 863
HpyF3I	CTNAG	4 cut(s)	110, 667, 747, 815
HpySE526I	ACGT	3 cut(s)	154, 236, 591
HspAI	GCGC	1 cut(s)	822
Kzo9I	GATC	4 cut(s)	489, 547, 617, 701
LguI	GCTCTTC	1 cut(s)	91
Lsp1109I	GCAGC	3 cut(s)	174, 461, 634
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	3 cut(s)	154, 236, 591
MaeIII	GTNAC	3 cut(s)	418, 578, 842
MalI	GATC	4 cut(s)	491, 549, 619, 703
MboI	GATC	4 cut(s)	489, 547, 617, 701
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	2 cut(s)	120, 268
MnlI	CCTC	4 cut(s)	64, 238, 398, 480
MseI	TTAA	1 cut(s)	95
MspI	CCGG	2 cut(s)	159, 662
MspR9I	CCNGG	2 cut(s)	567, 662
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	449, 611, 752, 863
NciI	CCSGG	1 cut(s)	662
NdeII	GATC	4 cut(s)	489, 547, 617, 701
NmuCI	GTSAC	2 cut(s)	578, 842
NspV	TTCGAA	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	1 cut(s)	830
PkrI	GCNGC	4 cut(s)	164, 180, 451, 649
Ppu21I	YACGTR	1 cut(s)	592
PshAI	GACNNNNGTC	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	701
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	4 cut(s)	163, 179, 450, 648
Sau3AI	GATC	4 cut(s)	489, 547, 617, 701
ScrFI	CCNGG	2 cut(s)	567, 662
SduI	GDGCHC	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	648, 885
SfuI	TTCGAA	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
SnaBI	TACGTA	1 cut(s)	592
Sse9I	AATT	2 cut(s)	120, 268
SsiI	CCGC	4 cut(s)	5, 178, 206, 224
SspMI	CTAG	1 cut(s)	735
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	565, 660
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	361, 848, 886
TaiI	ACGT	3 cut(s)	157, 239, 594
TaqI	TCGA	3 cut(s)	118, 372, 465
TasI	AATT	2 cut(s)	120, 268
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	830
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	4 cut(s)	649, 832, 853, 889
TseFI	GTSAC	2 cut(s)	578, 842
TseI	GCWGC	3 cut(s)	162, 449, 647
Tsp45I	GTSAC	2 cut(s)	578, 842
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	2 cut(s)	178, 190
TspRI	CASTG	4 cut(s)	649, 832, 853, 889
XapI	RAATTY	2 cut(s)	120, 268
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.