Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Reverse (-)

3867914 .. 3871655

Gene Structure 3742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G034000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGGCATTTGAAGCTGCACTGTCTGTCTCCTCCCTCTACTCTTCTTCTTTTTCTTCTTATTCCTCTAAATTCTTCGCGTCCCCCAAACCATCCACCTCCCTGAAGCTTCATATTTCCAATTCTATCCCTCCCATTTCCCGCAATTTTCTGTATTCTTCTCCCCCATGCATCCTCAACAACCCCACAAGAAAACCCTTCTTTGAGCTGATGTGCTCTGCGGTACAGGAGGTTACAGCTGAAGAAGAAGCAGTAGAAGAAAAAGCAGAGGAAACCCAAACGCAAAACCTGAAGAGAAAGCTCTACGTTGTGAATTTGCCTTGGTCTCTCACTGTGGTGGATATCAAGAACCTCTTTGGCGAATGTGGGACCGTTACAGATGTTGAGATTATAAAGCAACCAAATGGAAAGAGCAGAGGCTTTGCCTTTGTGACAATGGCTTCTGGGGAAGAAGCTCAGGCTGTCATTGAAAAGTTTCACTCTCATGAGGTATTGGATAGGACTATCAGAGTAGAGTTTGCAAAGCAATTTAAGAAACCTTCTCCACCTCCTCCCAACCCCCAAATTGTGGAGACACGCTATAAGCTTTACGTCTCTAATTTGGGATGGAAAGTAAGATCAAGCCATCTCAGAGATTTTGTCTCTGAAAATTTTAAAGTTCCTGTCTCAGCCAGGGTTGTCTTTAGTGGCCCCTCCGGGAAATCTGGTGGATATGGATTTCTTTCTTTTGCTACAAAGGAGGAAGCAGAGTCTGCAATTTCTTCTTTGAATGGGAAGGTTGGGGACAGTATTGGTGTTGGACCAATTAGTAGCAGGCTGGTGGTCAGTCTCTTTGAAATATTAACATGGTTTCAGAGCAGATTGATTGACTGGGCCCAGGTTATTGTGTCTCTACTAAGTTCATGGGATGAGCACATGCTCGGTTCGATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

312

Amino Acids

34.45

Weight (kDa)

7.69

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccII	CGCG	1 cut(s)	80
AciI	CCGC	3 cut(s)	5, 142, 221
AcsI	RAATTY	3 cut(s)	71, 313, 649
AcuI	CTGAAG	3 cut(s)	125, 261, 311
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	14, 470, 769, 836
AjnI	CCWGG	2 cut(s)	671, 876
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	7 cut(s)	17, 109, 208, 239, 301, 455, 586
AluI	AGCT	7 cut(s)	17, 109, 208, 239, 301, 455, 586
Alw21I	GWGCWC	2 cut(s)	218, 915
Alw26I	GTCTC	8 cut(s)	34, 330, 566, 598, 646, 670, 833, 894
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	688, 873
ApaI	GGGCCC	1 cut(s)	877
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	3 cut(s)	71, 313, 649
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	5 cut(s)	369, 689, 800, 873, 874
AsuC2I	CCSGG	1 cut(s)	697
AvaII	GGWCC	2 cut(s)	369, 800
BaeGI	GKGCMC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	218, 915
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	3 cut(s)	100, 600, 633
BciT130I	CCWGG	2 cut(s)	673, 878
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	8 cut(s)	34, 330, 566, 598, 646, 670, 833, 894
BisI	GCNGC	2 cut(s)	6, 18
BlsI	GCNGC	2 cut(s)	7, 19
Bme1390I	CCNGG	3 cut(s)	673, 697, 878
Bme18I	GGWCC	2 cut(s)	369, 800
BmgT120I	GGNCC	5 cut(s)	369, 689, 800, 873, 874
BmiI	GGNNCC	3 cut(s)	370, 691, 875
BmrFI	CCNGG	3 cut(s)	673, 697, 878
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	880
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	320, 672, 876
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	673, 878
BseDI	CCNNGG	3 cut(s)	320, 672, 876
BseGI	GGATG	4 cut(s)	92, 171, 611, 913
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	470, 643, 681
BseNI	ACTGG	1 cut(s)	875
BseRI	GAGGAG	2 cut(s)	22, 540
BseSI	GKGCMC	1 cut(s)	877
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	690, 875
BsiHKAI	GWGCWC	2 cut(s)	218, 915
BsiSI	CCGG	1 cut(s)	696
BslFI	GGGAC	3 cut(s)	67, 382, 797
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	8 cut(s)	34, 330, 566, 598, 646, 670, 833, 894
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	3 cut(s)	67, 382, 797
BsnI	GGCC	2 cut(s)	690, 875
Bso31I	GGTCTC	1 cut(s)	330
Bsp120I	GGGCCC	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	218, 877, 915
Bsp143I	GATC	1 cut(s)	617
BspACI	CCGC	3 cut(s)	5, 142, 221
BspANI	GGCC	2 cut(s)	690, 875
BspCNI	CTCAG	3 cut(s)	469, 642, 680
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	370, 691, 875
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	875
BssECI	CCNNGG	3 cut(s)	320, 672, 876
BssMI	GATC	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	673, 878
Bst4CI	ACNGT	4 cut(s)	24, 334, 373, 788
Bst6I	CTCTTC	2 cut(s)	49, 287
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	4 cut(s)	456, 629, 667, 896
BstF5I	GGATG	4 cut(s)	92, 171, 611, 913
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	620
BstMAI	GTCTC	8 cut(s)	34, 330, 566, 598, 646, 670, 833, 894
BstMBI	GATC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 752
BstNI	CCWGG	2 cut(s)	673, 878
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	3 cut(s)	671, 695, 876
BstSLI	GKGCMC	1 cut(s)	877
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	690, 875
BtsCI	GGATG	4 cut(s)	92, 171, 611, 913
BtsIMutI	CAGTG	2 cut(s)	20, 330
Cac8I	GCNNGC	1 cut(s)	815
CaiI	CAGNNNCTG	1 cut(s)	752
CciI	TCATGA	1 cut(s)	484
Cfr13I	GGNCC	5 cut(s)	369, 689, 800, 873, 874
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	5 cut(s)	168, 485, 846, 903, 916
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	4 cut(s)	456, 629, 667, 896
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
DraI	TTTAAA	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	49, 287
EarI	CTCTTC	2 cut(s)	49, 287
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	877
Eco31I	GGTCTC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	369, 800
Eco57I	CTGAAG	3 cut(s)	125, 261, 311
EcoRII	CCWGG	2 cut(s)	671, 876
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	5 cut(s)	171, 488, 849, 906, 919
FaiI	YATR	9 cut(s)	114, 169, 392, 486, 582, 714, 847, 904, 917
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	3 cut(s)	67, 382, 797
FatI	CATG	5 cut(s)	167, 484, 845, 902, 915
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	6, 18
FokI	GGATG	4 cut(s)	79, 158, 618, 920
FriOI	GRGCYC	1 cut(s)	877
Fsp4HI	GCNGC	2 cut(s)	6, 18
GluI	GCNGC	2 cut(s)	6, 18
HaeIII	GGCC	2 cut(s)	690, 875
HapII	CCGG	1 cut(s)	696
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	171, 488, 849, 906, 919
HindIII	AAGCTT	2 cut(s)	107, 584
HinfI	GANTC	1 cut(s)	749
HpaII	CCGG	1 cut(s)	696
Hpy188I	TCNGA	4 cut(s)	509, 632, 646, 855
Hpy188III	TCNNGA	2 cut(s)	346, 485
HpyAV	CCTTC	3 cut(s)	208, 549, 769
HpyCH4III	ACNGT	4 cut(s)	24, 334, 373, 788
HpyCH4IV	ACGT	2 cut(s)	306, 591
HpyCH4V	TGCA	4 cut(s)	20, 171, 521, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 752
HpyF3I	CTNAG	4 cut(s)	456, 629, 667, 896
HpySE526I	ACGT	2 cut(s)	306, 591
Hsp92II	CATG	5 cut(s)	171, 488, 849, 906, 919
Kzo9I	GATC	1 cut(s)	617
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	2 cut(s)	306, 591
MaeIII	GTNAC	3 cut(s)	232, 373, 430
MalI	GATC	1 cut(s)	619
MboI	GATC	1 cut(s)	617
MhlI	GDGCHC	3 cut(s)	218, 877, 915
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	778
Mph1103I	ATGCAT	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	3 cut(s)	531, 654, 842
MslI	CAYNNNNRTG	2 cut(s)	335, 483
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	696
MspR9I	CCNGG	3 cut(s)	673, 697, 878
MvaI	CCWGG	2 cut(s)	673, 878
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	14, 752
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	1 cut(s)	617
NlaIII	CATG	5 cut(s)	171, 488, 849, 906, 919
NlaIV	GGNNCC	3 cut(s)	370, 691, 875
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	173
NspI	RCATGY	1 cut(s)	919
OliI	CACNNNNGTG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	695
PkrI	GCNGC	2 cut(s)	7, 19
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	671, 876
PspGI	CCWGG	2 cut(s)	671, 876
PspN4I	GGNNCC	3 cut(s)	370, 691, 875
PspOMI	GGGCCC	1 cut(s)	873
PspPI	GGNCC	5 cut(s)	369, 689, 800, 873, 874
PstNI	CAGNNNCTG	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	2 cut(s)	335, 483
SaqAI	TTAA	3 cut(s)	531, 654, 842
SatI	GCNGC	2 cut(s)	6, 18
Sau3AI	GATC	1 cut(s)	617
Sau96I	GGNCC	5 cut(s)	369, 689, 800, 873, 874
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	3 cut(s)	673, 697, 878
SduI	GDGCHC	3 cut(s)	218, 877, 915
SfaNI	GCATC	1 cut(s)	180
SinI	GGWCC	2 cut(s)	369, 800
SmiMI	CAYNNNNRTG	2 cut(s)	335, 483
SsiI	CCGC	3 cut(s)	5, 142, 221
SspI	AATATT	1 cut(s)	840
StyD4I	CCNGG	3 cut(s)	671, 695, 876
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	4 cut(s)	24, 334, 373, 788
TaiI	ACGT	2 cut(s)	309, 594
TaqI	TCGA	1 cut(s)	926
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	531, 654, 842
Tru9I	TTAA	3 cut(s)	531, 654, 842
TscAI	CASTG	2 cut(s)	27, 337
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	101, 891
TspRI	CASTG	2 cut(s)	27, 337
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	369, 800
XapI	RAATTY	3 cut(s)	71, 313, 649
XceI	RCATGY	1 cut(s)	919
XmnI	GAANNNNTTC	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.