Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Reverse (-)

43921604 .. 43924184

Gene Structure 2581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGGCATTTGAAGCTGCGCTGTCTCTCCCCACACTCTACCCTCCATGTTCCTCTAAACCCCTCTCCTTTCCTAAACCCTTAAACCTTCGTATTCCCAATTTCGTCCCTCCCATTTCTCACAACTTCCTCTTTTCTCCTCCCCCACTTATCCCCACAACAAACCTCTCTTTCGAGCTTCTGTGCTCCGCGGTGCAGGAGATTACAGCCGGGGAAGAACAGTTGGGACAAGACTCAGTGGAAGAGAAAACCCAAAACCAGCAAAACCTCAAGAGAAAGCTGTACGTGGTGAACTTGCCTTGGTCCCTCACTGTGGTCGATATCAAGAACATCTTTGGAGAATGTGGGGATGTTAAAGACGTTGAGATTATAAAGCGACAAGATGGGAGGAACAGAGGCTTTGCATTTGTCACAATGGCTTCTGGGGAAGAAGCTCAGGCTGTCATTGATAAATTTGACTCTCAGGAGCTATCAGGTAGAACTATCAAGGTAGAGTTTGCAAAGCAATTTAAGAAACCTTCTCCACGTCCTTCAACCCCCCAAGTTCAAGAGACTCGCTATAAACTTTATGTTTCCAATTTGGCATGGAAAGCAAGATCAAGCCATCTCAGAGATTTTGTCTCTTTAAATTTTAAAACTCCAGTTTCAGCCCGTGTCGTCTTTGATGGGCCTTCAGGGAAATCTGGTGGATATGGGTTTGTTTCTTTTGCTACCAAGGAGGAGGCAGAGGAGGCAATTTCTGCTTTGAATGGGCAGGAATTGATGGGGCGGCCAGTGAATCTGAAATTTAGTGAGAAAAATGTAGGTGAATCTACAAGCCAAGAGGAAAACGTTGACTCCAACCAAAATGAAAAGGAGGAGGAAGAGAAATTGGAGAGTCAGCCTAAAGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

299

Amino Acids

33.18

Weight (kDa)

5.4

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	94 - 163	4.2e-17	RNA recognition motif
RRM_5	PF13893	103 - 182	8.3e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	189 - 259	1.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	5, 189, 191, 769
AclI	AACGTT	1 cut(s)	831
AcoI	YGGCCR	1 cut(s)	770
AcsI	RAATTY	3 cut(s)	452, 628, 785
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	14, 534, 548, 748
AjiI	CACGTC	1 cut(s)	527
AluBI	AGCT	5 cut(s)	17, 178, 280, 434, 469
AluI	AGCT	5 cut(s)	17, 178, 280, 434, 469
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	3 cut(s)	30, 545, 625
AoxI	GGCC	2 cut(s)	668, 770
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	3 cut(s)	452, 628, 785
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	303, 668
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	301, 818
AvaII	GGWCC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	4 cut(s)	377, 612, 659, 757
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	30, 545, 625
BisI	GCNGC	3 cut(s)	6, 18, 770
BlsI	GCNGC	3 cut(s)	7, 19, 771
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	303
BmgBI	CACGTC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	303, 668
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	189, 210, 299, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	641, 773
BseDI	CCNNGG	4 cut(s)	189, 210, 299, 714
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	4 cut(s)	249, 449, 476, 622
BseNI	ACTGG	2 cut(s)	641, 773
BseRI	GAGGAG	4 cut(s)	129, 734, 743, 872
BseXI	GCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	670, 772
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	3 cut(s)	92, 240, 289
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	30, 545, 625
BsmFI	GGGAC	3 cut(s)	92, 240, 289
BsnI	GGCC	2 cut(s)	670, 772
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	596
BspACI	CCGC	4 cut(s)	5, 189, 191, 769
BspANI	GGCC	2 cut(s)	670, 772
BspCNI	CTCAG	4 cut(s)	248, 448, 475, 621
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	641, 773
BssECI	CCNNGG	4 cut(s)	189, 210, 299, 714
BssMI	GATC	1 cut(s)	596
BssT1I	CCWWGG	2 cut(s)	299, 714
Bst4CI	ACNGT	2 cut(s)	222, 313
Bst6I	CTCTTC	2 cut(s)	237, 858
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	235, 435, 462, 608
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	599
BstMAI	GTCTC	3 cut(s)	30, 545, 625
BstMBI	GATC	1 cut(s)	596
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 590, 731, 740
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	670, 772
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	3 cut(s)	243, 309, 780
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	303, 668
Cfr42I	CCGCGG	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	48, 585
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	4 cut(s)	235, 435, 462, 608
DpnI	GATC	1 cut(s)	598
DpnII	GATC	1 cut(s)	596
DraI	TTTAAA	2 cut(s)	627, 634
EaeI	YGGCCR	1 cut(s)	770
Eam1104I	CTCTTC	2 cut(s)	237, 858
EarI	CTCTTC	2 cut(s)	237, 858
Eco130I	CCWWGG	2 cut(s)	299, 714
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	657
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	299, 714
ErhI	CCWWGG	2 cut(s)	299, 714
FaeI	CATG	2 cut(s)	51, 588
FaiI	YATR	7 cut(s)	49, 371, 561, 570, 586, 693, 895
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	3 cut(s)	92, 240, 289
FatI	CATG	2 cut(s)	47, 584
Fnu4HI	GCNGC	3 cut(s)	6, 18, 770
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	6, 18, 770
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	6, 18, 770
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	670, 772
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	51, 588
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	8 cut(s)	233, 458, 553, 778, 809, 836, 877, 890
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	301, 818
Hpy166II	GTNNAC	2 cut(s)	292, 835
Hpy188I	TCNGA	2 cut(s)	611, 783
Hpy188III	TCNNGA	4 cut(s)	271, 325, 464, 548
Hpy8I	GTNNAC	2 cut(s)	292, 835
HpyAV	CCTTC	4 cut(s)	98, 528, 540, 681
HpyCH4III	ACNGT	2 cut(s)	222, 313
HpyCH4IV	ACGT	4 cut(s)	285, 360, 526, 831
HpyCH4V	TGCA	3 cut(s)	196, 404, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 590, 731, 740
HpyF3I	CTNAG	4 cut(s)	235, 435, 462, 608
HpySE526I	ACGT	4 cut(s)	285, 360, 526, 831
Hsp92II	CATG	2 cut(s)	51, 588
HspAI	GCGC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	191, 466
Lsp1109I	GCAGC	1 cut(s)	4
MaeII	ACGT	4 cut(s)	285, 360, 526, 831
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	1 cut(s)	598
MboI	GATC	1 cut(s)	596
MboII	GAAGA	4 cut(s)	227, 254, 440, 875
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	9 cut(s)	100, 452, 506, 577, 628, 735, 758, 785, 869
MlyI	GAGTC	5 cut(s)	227, 452, 547, 830, 886
MmeI	TCCRAC	1 cut(s)	864
MseI	TTAA	5 cut(s)	83, 354, 510, 626, 633
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	14, 590, 731, 740
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	596
NlaIII	CATG	2 cut(s)	51, 588
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	778, 809, 890
PkrI	GCNGC	3 cut(s)	7, 19, 771
PleI	GAGTC	5 cut(s)	227, 452, 547, 830, 885
PpsI	GAGTC	5 cut(s)	227, 452, 547, 830, 885
Ppu21I	YACGTR	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	831
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	2 cut(s)	303, 668
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	83, 354, 510, 626, 633
SatI	GCNGC	3 cut(s)	6, 18, 770
Sau3AI	GATC	1 cut(s)	596
Sau96I	GGNCC	2 cut(s)	303, 668
SchI	GAGTC	5 cut(s)	227, 452, 547, 830, 886
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	9 cut(s)	100, 452, 506, 577, 628, 735, 758, 785, 869
SsiI	CCGC	4 cut(s)	5, 189, 191, 769
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	299, 714
TaaI	ACNGT	2 cut(s)	222, 313
TaiI	ACGT	4 cut(s)	288, 363, 529, 834
TaqI	TCGA	2 cut(s)	174, 318
TasI	AATT	9 cut(s)	100, 452, 506, 577, 628, 735, 758, 785, 869
TauI	GCSGC	2 cut(s)	8, 772
TfiI	GAWTC	3 cut(s)	778, 809, 890
Tru1I	TTAA	5 cut(s)	83, 354, 510, 626, 633
Tru9I	TTAA	5 cut(s)	83, 354, 510, 626, 633
TscAI	CASTG	3 cut(s)	243, 316, 780
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	864
TspRI	CASTG	3 cut(s)	243, 316, 780
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	3 cut(s)	452, 628, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.