Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004509.1

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Forward (+)

90831 .. 93494

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004509.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggcggcatttgaagctgcgctgtctctcccctcactctactctccttgttcctctaaacccctctcctttcctaaacccttaaaccttcgtattcccaatatcgcccgtcccatttctcacaacttcctcttctctcctcccccacttatccccacaagaaacctctctttcgagcttctgtgctccgcggtgcaggagattacagccggggaagaacagttgggacaagactcagtggaagagaaaacccaaaaccagcaaaacctcaagagaaagctgtacgtggtgaacttgccttggtccctcactgtggtcgatatcaagaacctgtttggagaatgtggggatgttaaagacgttgagattataaagcaacaagatgggaggaacagaggctttgcatttgtcacaatggcttctggggaagaagctcaggctgtcattgataaatttgactctcaggagctatcaggtagaactatcaaggtagagtttgcaaagcaatttaagaaaccatctccactttcagcccgtgtcgtctttgatgggccttcagggaagtctggtggatatggatttgtttcttttgctacaaaggaggaggcagaggaggcaatttctgctttgaatgggcacggattgatggggcggccggtgaatctgaaatttagtgagaaaaatgtaggtgaatctacaagccaagaggaaaacgttgactccaaccaaaatgaaaaggaggaggaagagaaattggagagtcagcctgaagaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

4.94

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	5, 189, 191, 652
AclI	AACGTT	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	452, 668
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	14, 631
AluBI	AGCT	5 cut(s)	17, 178, 280, 434, 469
AluI	AGCT	5 cut(s)	17, 178, 280, 434, 469
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	551, 653
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	452, 668
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	303, 551
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	301, 670, 701
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	4 cut(s)	377, 526, 542, 640
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	6, 18, 653
BlsI	GCNGC	3 cut(s)	7, 19, 654
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	303, 551
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	189, 210, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	655
BseDI	CCNNGG	3 cut(s)	189, 210, 299
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	249, 449, 476
BseRI	GAGGAG	4 cut(s)	129, 617, 626, 755
BseSI	GKGCMC	1 cut(s)	639
BseX3I	CGGCCG	1 cut(s)	653
BseXI	GCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	656
BshFI	GGCC	2 cut(s)	553, 655
BsiEI	CGRYCG	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	210, 656
BslFI	GGGAC	3 cut(s)	96, 240, 289
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	3 cut(s)	96, 240, 289
BsnI	GGCC	2 cut(s)	553, 655
Bsp1286I	GDGCHC	2 cut(s)	188, 639
BspACI	CCGC	4 cut(s)	5, 189, 191, 652
BspANI	GGCC	2 cut(s)	553, 655
BspCNI	CTCAG	3 cut(s)	248, 448, 475
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	655
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	189, 210, 299
BssT1I	CCWWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	222, 313
Bst6I	CTCTTC	3 cut(s)	137, 237, 741
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	286
BstDEI	CTNAG	3 cut(s)	235, 435, 462
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	656
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 614, 623
BstSCI	CCNGG	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	553, 655
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	243, 309
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	303, 551
Cfr42I	CCGCGG	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	283
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	235, 435, 462
EaeI	YGGCCR	1 cut(s)	653
EagI	CGGCCG	1 cut(s)	653
Eam1104I	CTCTTC	3 cut(s)	137, 237, 741
EarI	CTCTTC	3 cut(s)	137, 237, 741
EclXI	CGGCCG	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	303
Eco52I	CGGCCG	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaiI	YATR	3 cut(s)	371, 576, 778
FaqI	GGGAC	3 cut(s)	96, 240, 289
Fnu4HI	GCNGC	3 cut(s)	6, 18, 653
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	6, 18, 653
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	6, 18, 653
HaeIII	GGCC	2 cut(s)	553, 655
HapII	CCGG	2 cut(s)	210, 656
HhaI	GCGC	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	7 cut(s)	233, 458, 661, 692, 719, 760, 773
HpaII	CCGG	2 cut(s)	210, 656
HphI	GGTGA	3 cut(s)	301, 670, 701
Hpy166II	GTNNAC	2 cut(s)	292, 718
Hpy188I	TCNGA	1 cut(s)	666
Hpy188III	TCNNGA	3 cut(s)	271, 325, 464
Hpy8I	GTNNAC	2 cut(s)	292, 718
HpyAV	CCTTC	2 cut(s)	98, 564
HpyCH4III	ACNGT	2 cut(s)	222, 313
HpyCH4IV	ACGT	3 cut(s)	285, 360, 714
HpyCH4V	TGCA	3 cut(s)	196, 404, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 614, 623
HpyF3I	CTNAG	3 cut(s)	235, 435, 462
HpySE526I	ACGT	3 cut(s)	285, 360, 714
HspAI	GCGC	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	191, 466
Lsp1109I	GCAGC	1 cut(s)	4
MaeII	ACGT	3 cut(s)	285, 360, 714
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	5 cut(s)	124, 227, 254, 440, 758
MhlI	GDGCHC	2 cut(s)	188, 639
MluCI	AATT	5 cut(s)	452, 506, 618, 668, 752
MlyI	GAGTC	4 cut(s)	227, 452, 713, 769
MmeI	TCCRAC	1 cut(s)	747
MseI	TTAA	3 cut(s)	83, 354, 510
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	210, 656
MspR9I	CCNGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	14, 614, 623
NciI	CCSGG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	661, 692, 773
PkrI	GCNGC	3 cut(s)	7, 19, 654
PleI	GAGTC	4 cut(s)	227, 452, 713, 768
PpsI	GAGTC	4 cut(s)	227, 452, 713, 768
Ppu21I	YACGTR	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	2 cut(s)	303, 551
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	83, 354, 510
SatI	GCNGC	3 cut(s)	6, 18, 653
Sau96I	GGNCC	2 cut(s)	303, 551
SchI	GAGTC	4 cut(s)	227, 452, 713, 769
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	188, 639
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	452, 506, 618, 668, 752
SsiI	CCGC	4 cut(s)	5, 189, 191, 652
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	222, 313
TaiI	ACGT	3 cut(s)	288, 363, 717
TaqI	TCGA	2 cut(s)	174, 318
TasI	AATT	5 cut(s)	452, 506, 618, 668, 752
TauI	GCSGC	2 cut(s)	8, 655
TfiI	GAWTC	3 cut(s)	661, 692, 773
Tru1I	TTAA	3 cut(s)	83, 354, 510
Tru9I	TTAA	3 cut(s)	83, 354, 510
TscAI	CASTG	2 cut(s)	243, 316
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	747
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	243, 316
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	2 cut(s)	452, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.