Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Forward (+)

5357157 .. 5371936

Gene Structure 14780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG038800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGATCCACATACCAGAGAGACCGCCAGTGAAGCGACCAGATTCTGATCAGGTCCCTACCATGGAGCAACTGGAGCATACTAGACAGGGAGGCTATGAGAAGAGGAACTTCCGTCTTCTTGCCCACTGCTACTTATCCCATGTTCCCAGAAAAACTTGCCATGGAGGGAATGAGTTTGCAGCAAGGAGAGATTTGCAGTGCCGTTATAGGTCTATGGACCCTCACTTCCCGTCTAGATTTGTGAATATGGGAAGAGTTATGTTGGGGTTGGATATGGATTGGATCAGATATGTTGTGAAGTTGGAAGGAATCCATATTTCTCTACAGACTGAAAAGAGTAACAGATCAGAGATGGGTCTATGGACCCTGGCTACCTGCCGAGATTTGTCAATATGGGTTTACCTGTTTGGAGAATGTGGGGATGTTAAAGACGTTGAGATTATAAAGCAACAAGATGGGAGGAACAGAGGCTTTGCATTTGTCACAATGGCTTCTGGGGAAGAAGCTCAGGCTGTCATTGATAAATTTGACTCTCAGGAGCTATCAGGTAGAACTATCAAGGTAGAGTTTGCAAAGCAATTTAAGAAACCATCTCCACGTCCTTCGACCCCTCAAGTTCAAGAGACTCGCTATAAACTTTATGTTTCCAATTTGGCATGGAAAGCAAGATCAAGCCATCTCAGAGACTTTGTCTCTTTAAATTTTAAAACTCCAGTTTCAGCCCGTGTCGTCTTTGATGGGCCTTCAGGGAAGTCTGGTGGATATGGATTTGTTTCTTTTGCTACAAAGGAGGAGGCAGAGGAGGCAATTTCTGCTTTGAATGGGCACGGTGGCATTGACACAGCCACATTGGAAGCACGCATAAAAGTTGTGAATCCAGAGGATCCGGAGCCTGTAATAAATCTCTATGTTGAGGACCAGGCTGACCCTGCAATGCGACTGGTCTCTGAGATGATGATACTCTGTGGAGAAGTTATAGCTACTTTTGGTTGTAGCAATAACATTCCTTTACCATACAGGGGACAACCCCAATCCAACATCGACACATCTGTATTTGCCCATCTTCCAGAAGGACCTGTTAGAAGCTCTGCCCTTGTCAAAATAATGCGTGCTGCTGAAATTGATTTCAGGAAACCTATACGCCATGGAATTTTAGGACTTCCTGGTTATGTTCAGTTTACATCTCCTATCCGCAGATATCTGGATCTACTAGCTCACTATCAGCGGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000932 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0022613 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNB

Protein Analysis

410

Amino Acids

46.37

Weight (kDa)

8.72

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	135 - 187	6.5e-12	RNA recognition motif
RRM_1	PF00076	213 - 276	1e-11	RNA recognition motif
RNB	PF00773	276 - 408	4.4e-20	RNB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	383
AccIII	TCCGGA	1 cut(s)	886
AciI	CCGC	3 cut(s)	23, 1192, 1225
AclWI	GGATC	4 cut(s)	290, 878, 891, 1212
AcsI	RAATTY	3 cut(s)	524, 700, 1149
AcuI	CTGAAG	1 cut(s)	729
AfiI	CCNNNNNNNGG	2 cut(s)	61, 1019
AgsI	TTSAA	2 cut(s)	620, 820
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	3 cut(s)	366, 918, 1162
AluBI	AGCT	5 cut(s)	506, 541, 980, 1086, 1214
AluI	AGCT	5 cut(s)	506, 541, 980, 1086, 1214
Alw26I	GTCTC	5 cut(s)	13, 617, 678, 697, 949
AlwI	GGATC	4 cut(s)	290, 878, 891, 1212
AlwNI	CAGNNNCTG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	2 cut(s)	179, 1112
ApoI	RAATTY	3 cut(s)	524, 700, 1149
AspS9I	GGNCC	6 cut(s)	52, 217, 363, 740, 916, 1073
AvaII	GGWCC	5 cut(s)	52, 217, 363, 916, 1073
BaeGI	GKGCMC	1 cut(s)	828
BamHI	GGATCC	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	191, 1099
BccI	CCATC	6 cut(s)	346, 449, 598, 684, 731, 1068
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	3 cut(s)	368, 920, 1164
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	5 cut(s)	13, 617, 678, 697, 949
BfaI	CTAG	4 cut(s)	81, 234, 1211, 1231
BfmI	CTRYAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	180, 1113
BlsI	GCNGC	2 cut(s)	181, 1114
Bme1390I	CCNGG	3 cut(s)	368, 920, 1164
Bme18I	GGWCC	5 cut(s)	52, 217, 363, 916, 1073
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	6 cut(s)	52, 217, 363, 740, 916, 1073
BmiI	GGNNCC	5 cut(s)	54, 219, 365, 885, 891
BmrFI	CCNGG	3 cut(s)	368, 920, 1164
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	2 cut(s)	92, 696
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	13, 949
BsaJI	CCNNGG	4 cut(s)	60, 160, 366, 1144
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 1019
Bse1I	ACTGG	4 cut(s)	26, 75, 713, 945
Bse3DI	GCAATG	1 cut(s)	939
Bse8I	GATNNNNATC	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	886
BseBI	CCWGG	3 cut(s)	368, 920, 1164
BseDI	CCNNGG	4 cut(s)	60, 160, 366, 1144
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	61, 1019
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	4 cut(s)	521, 548, 694, 939
BseNI	ACTGG	4 cut(s)	26, 75, 713, 945
BseRI	GAGGAG	2 cut(s)	806, 815
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	191, 1099
BshFI	GGCC	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	2 cut(s)	38, 1035
BslI	CCNNNNNNNGG	2 cut(s)	61, 1019
BsmAI	GTCTC	5 cut(s)	13, 617, 678, 697, 949
BsmFI	GGGAC	2 cut(s)	38, 1035
BsnI	GGCC	1 cut(s)	742
Bso31I	GGTCTC	2 cut(s)	13, 949
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp13I	TCCGGA	1 cut(s)	886
Bsp143I	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
Bsp19I	CCATGG	3 cut(s)	60, 160, 1144
BspACI	CCGC	3 cut(s)	23, 1192, 1225
BspANI	GGCC	1 cut(s)	742
BspCNI	CTCAG	4 cut(s)	520, 547, 693, 940
BspEI	TCCGGA	1 cut(s)	886
BspLI	GGNNCC	5 cut(s)	54, 219, 365, 885, 891
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	4 cut(s)	290, 878, 891, 1212
BspTNI	GGTCTC	2 cut(s)	13, 949
BsrDI	GCAATG	1 cut(s)	939
BsrI	ACTGG	4 cut(s)	26, 75, 713, 945
BssECI	CCNNGG	4 cut(s)	60, 160, 366, 1144
BssMI	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
BssT1I	CCWWGG	3 cut(s)	60, 160, 1144
Bst2UI	CCWGG	3 cut(s)	368, 920, 1164
Bst4CI	ACNGT	1 cut(s)	830
Bst6I	CTCTTC	2 cut(s)	95, 247
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	859, 1110
BstDEI	CTNAG	4 cut(s)	507, 534, 680, 948
BstDSI	CCRYGG	3 cut(s)	60, 160, 1144
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	8 cut(s)	6, 49, 285, 347, 671, 886, 1207, 1230
BstMAI	GTCTC	5 cut(s)	13, 617, 678, 697, 949
BstMBI	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 73, 662, 803, 812, 929
BstNI	CCWGG	3 cut(s)	368, 920, 1164
BstSCI	CCNGG	3 cut(s)	366, 918, 1162
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	828
BstV1I	GCAGC	2 cut(s)	191, 1099
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	3 cut(s)	883, 1204, 1227
BstYI	RGATCY	3 cut(s)	883, 1204, 1227
BsuRI	GGCC	1 cut(s)	742
BtgI	CCRYGG	3 cut(s)	60, 160, 1144
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	2 cut(s)	124, 203
BtsIMutI	CAGTG	3 cut(s)	33, 124, 203
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	2 cut(s)	859, 1110
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	6 cut(s)	52, 217, 363, 740, 916, 1073
CviAII	CATG	5 cut(s)	61, 140, 161, 657, 1145
DdeI	CTNAG	4 cut(s)	507, 534, 680, 948
DpnI	GATC	8 cut(s)	5, 48, 284, 346, 670, 885, 1206, 1229
DpnII	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
DraI	TTTAAA	2 cut(s)	699, 706
Eam1104I	CTCTTC	2 cut(s)	95, 247
EarI	CTCTTC	2 cut(s)	95, 247
Eco130I	CCWWGG	3 cut(s)	60, 160, 1144
Eco31I	GGTCTC	2 cut(s)	13, 949
Eco32I	GATATC	1 cut(s)	1199
Eco47I	GGWCC	5 cut(s)	52, 217, 363, 916, 1073
Eco57I	CTGAAG	1 cut(s)	729
EcoO109I	RGGNCCY	2 cut(s)	52, 1073
EcoRII	CCWGG	3 cut(s)	366, 918, 1162
EcoRV	GATATC	1 cut(s)	1199
EcoT14I	CCWWGG	3 cut(s)	60, 160, 1144
ErhI	CCWWGG	3 cut(s)	60, 160, 1144
FaeI	CATG	5 cut(s)	64, 143, 164, 660, 1148
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	38, 1035
FatI	CATG	5 cut(s)	60, 139, 160, 656, 1144
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	180, 1113
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	180, 1113
FspBI	CTAG	4 cut(s)	81, 234, 1211, 1231
GluI	GCNGC	2 cut(s)	180, 1113
GsuI	CTGGAG	2 cut(s)	92, 696
HaeIII	GGCC	1 cut(s)	742
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	5 cut(s)	64, 143, 164, 660, 1148
HinfI	GANTC	5 cut(s)	41, 309, 530, 625, 874
HpaII	CCGG	1 cut(s)	887
Hpy166II	GTNNAC	2 cut(s)	400, 1179
Hpy188I	TCNGA	5 cut(s)	46, 287, 349, 683, 949
Hpy188III	TCNNGA	8 cut(s)	234, 536, 620, 878, 887, 1067, 1129, 1202
Hpy8I	GTNNAC	2 cut(s)	400, 1179
HpyAV	CCTTC	4 cut(s)	299, 612, 753, 1064
HpyCH4III	ACNGT	1 cut(s)	830
HpyCH4IV	ACGT	2 cut(s)	432, 598
HpyCH4V	TGCA	5 cut(s)	179, 196, 476, 572, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 73, 662, 803, 812, 929
HpyF3I	CTNAG	4 cut(s)	507, 534, 680, 948
HpySE526I	ACGT	2 cut(s)	432, 598
Hsp92II	CATG	5 cut(s)	64, 143, 164, 660, 1148
Kpn2I	TCCGGA	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
LmnI	GCTCC	4 cut(s)	64, 73, 538, 889
Lsp1109I	GCAGC	2 cut(s)	191, 1099
MaeI	CTAG	4 cut(s)	81, 234, 1211, 1231
MaeII	ACGT	2 cut(s)	432, 598
MaeIII	GTNAC	2 cut(s)	338, 481
MalI	GATC	8 cut(s)	5, 48, 284, 346, 670, 885, 1206, 1229
MboI	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
MboII	GAAGA	5 cut(s)	107, 112, 264, 512, 1055
MflI	RGATCY	3 cut(s)	883, 1204, 1227
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	7 cut(s)	524, 578, 649, 700, 807, 1119, 1149
MlyI	GAGTC	2 cut(s)	524, 619
MmeI	TCCRAC	3 cut(s)	249, 282, 1059
MroI	TCCGGA	1 cut(s)	886
MseI	TTAA	4 cut(s)	426, 582, 698, 705
MspA1I	CMGCKG	1 cut(s)	1225
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	3 cut(s)	368, 920, 1164
MvaI	CCWGG	3 cut(s)	368, 920, 1164
MwoI	GCNNNNNNNGC	6 cut(s)	31, 73, 662, 803, 812, 929
NcoI	CCATGG	3 cut(s)	60, 160, 1144
NdeII	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
NlaIII	CATG	5 cut(s)	64, 143, 164, 660, 1148
NlaIV	GGNNCC	5 cut(s)	54, 219, 365, 885, 891
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	41, 309, 874
PflFI	GACNNNGTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	181, 1114
PleI	GAGTC	2 cut(s)	524, 619
PpsI	GAGTC	2 cut(s)	524, 619
PpuMI	RGGWCCY	2 cut(s)	52, 1073
PsiI	TTATAA	1 cut(s)	443
Psp5II	RGGWCCY	2 cut(s)	52, 1073
Psp6I	CCWGG	3 cut(s)	366, 918, 1162
PspGI	CCWGG	3 cut(s)	366, 918, 1162
PspN4I	GGNNCC	5 cut(s)	54, 219, 365, 885, 891
PspPI	GGNCC	6 cut(s)	52, 217, 363, 740, 916, 1073
PspPPI	RGGWCCY	2 cut(s)	52, 1073
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	3 cut(s)	883, 1204, 1227
PsyI	GACNNNGTC	1 cut(s)	689
SaqAI	TTAA	4 cut(s)	426, 582, 698, 705
SatI	GCNGC	2 cut(s)	180, 1113
Sau3AI	GATC	8 cut(s)	3, 46, 282, 344, 668, 883, 1204, 1227
Sau96I	GGNCC	6 cut(s)	52, 217, 363, 740, 916, 1073
SchI	GAGTC	2 cut(s)	524, 619
ScrFI	CCNGG	3 cut(s)	368, 920, 1164
SduI	GDGCHC	1 cut(s)	828
SfcI	CTRYAG	1 cut(s)	323
SinI	GGWCC	5 cut(s)	52, 217, 363, 916, 1073
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	7 cut(s)	524, 578, 649, 700, 807, 1119, 1149
SsiI	CCGC	3 cut(s)	23, 1192, 1225
SspMI	CTAG	4 cut(s)	81, 234, 1211, 1231
StyD4I	CCNGG	3 cut(s)	366, 918, 1162
StyI	CCWWGG	3 cut(s)	60, 160, 1144
TaaI	ACNGT	1 cut(s)	830
TaiI	ACGT	2 cut(s)	435, 601
TaqI	TCGA	2 cut(s)	605, 1041
TasI	AATT	7 cut(s)	524, 578, 649, 700, 807, 1119, 1149
TfiI	GAWTC	3 cut(s)	41, 309, 874
Tru1I	TTAA	4 cut(s)	426, 582, 698, 705
Tru9I	TTAA	4 cut(s)	426, 582, 698, 705
TscAI	CASTG	3 cut(s)	33, 131, 203
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	179, 1112
Tsp45I	GTSAC	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	3 cut(s)	33, 131, 203
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	5 cut(s)	52, 217, 363, 916, 1073
XapI	RAATTY	3 cut(s)	524, 700, 1149
XbaI	TCTAGA	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XspI	CTAG	4 cut(s)	81, 234, 1211, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.