Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Forward (+)

3757183 .. 3759681

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGGCATTTGAGGCTGCACTCTCTGTCTCCTTCCTTCACTCCTCTTCTTTTCCTTGTTATTCCTCCAAACTCAACTCGTCCCCCAGACAATTGGCTCCCCTCAAGCTTCATATTCCCAATTCCCTCAATTTTCTTCTTTCCGGTCCCCGACGCATCCCCACAAGAAAGCTCCGTTTTGAGCTGCTGTGCTCTGCAGTGGAGGAGATTACAGCAGAAGAAGAAAAAGCGGCAGTAGAAGAAAGCCAGCAGCAAAACCAGAAGAGAAAGCTGTACGTAGTGAATTTGCCATGGTCTCTGACTGTGGTGGATATCAAGAACCTCTTTGGCGAATGTGGGACTGTCAAAGACGTCGAGATTATAAAGCAACAAAATGGGAAGAGCAGAGGCTTTGCCTTTGTGACAATGGATTCCGGGGAAGAAGCTCAGGCCGTCATTGATAAATTTCACTCCCATGAGGTGTTGGGTAGGACTATCAGAATTGAGTTTGCAAAGCAATTTAAGAAACCTTCTCCACCGCCCTCCAATCCCCAAATTGGAGAGACACGCTATAAGCTTTACGTGTCTAATTTGGGATGGAAAGTAAGATCAAGCCATCTCAGAGATTTTGTCTCTGAAAATTTCAAAGTTCCAGTTTCAGCCAGGGTTGTCTTTAGTGGCCCTTCTGGGAAATCTGGTGGTTATGGATTTCTTTCTTTTACTACAAAGGAGGAAGCAGAGGCTGCAATTTCTTCTTTGCAAGGGAAGGAATTGATGGGCCGACCAATTAATCTAAAATTTAGTGAGAAGAATGTTGGTGATTCTGGAAGCCAAAATGTTGGTGACTCTGGAAGCCAAAATGTTGGTGACTCTGGAAGCCAAAAGGAAGAGGGAGATAGTTTTGAGGGTCAACCTGAAGAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

302

Amino Acids

33.11

Weight (kDa)

7.69

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AatII	GACGTC	1 cut(s)	354
AciI	CCGC	3 cut(s)	5, 230, 518
AcsI	RAATTY	4 cut(s)	283, 443, 619, 776
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	6 cut(s)	109, 172, 184, 271, 425, 556
AluI	AGCT	6 cut(s)	109, 172, 184, 271, 425, 556
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	4 cut(s)	34, 300, 536, 616
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	3 cut(s)	429, 658, 757
ApeKI	GCWGC	4 cut(s)	17, 184, 250, 722
ApoI	RAATTY	4 cut(s)	283, 443, 619, 776
AseI	ATTAAT	1 cut(s)	768
AspS9I	GGNCC	3 cut(s)	146, 659, 757
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	809, 833, 857
AvaII	GGWCC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	4, 171, 262, 709
BccI	CCATC	3 cut(s)	570, 603, 748
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	4 cut(s)	34, 300, 536, 616
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	6 cut(s)	6, 18, 185, 231, 251, 723
BlsI	GCNGC	6 cut(s)	7, 19, 186, 232, 252, 724
Bme1390I	CCNGG	2 cut(s)	415, 643
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	146, 659, 757
BmiI	GGNNCC	2 cut(s)	99, 148
BmrFI	CCNGG	2 cut(s)	415, 643
BmsI	GCATC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	415
BsaAI	YACGTR	2 cut(s)	277, 562
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	290, 414, 642
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	3 cut(s)	290, 414, 642
BseGI	GGATG	2 cut(s)	156, 581
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	440, 613
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	2 cut(s)	34, 218
BseXI	GCAGC	4 cut(s)	4, 171, 262, 709
BshFI	GGCC	3 cut(s)	431, 660, 759
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	144, 414
BslFI	GGGAC	3 cut(s)	67, 132, 352
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	4 cut(s)	34, 300, 536, 616
BsmFI	GGGAC	3 cut(s)	67, 132, 352
BsnI	GGCC	3 cut(s)	431, 660, 759
Bso31I	GGTCTC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	587
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	3 cut(s)	5, 230, 518
BspANI	GGCC	3 cut(s)	431, 660, 759
BspCNI	CTCAG	2 cut(s)	439, 612
BspLI	GGNNCC	2 cut(s)	99, 148
BspMAI	CTGCAG	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	290, 414, 642
BssMI	GATC	1 cut(s)	587
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	304, 343
Bst6I	CTCTTC	4 cut(s)	52, 257, 374, 861
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBAI	YACGTR	2 cut(s)	277, 562
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	426, 599
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	156, 581
BstKTI	GATC	1 cut(s)	590
BstMAI	GTCTC	4 cut(s)	34, 300, 536, 616
BstMBI	GATC	1 cut(s)	587
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 722
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	2 cut(s)	413, 641
BstSFI	CTRYAG	1 cut(s)	195
BstSNI	TACGTA	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	4, 171, 262, 709
BstXI	CCANNNNNNTGG	3 cut(s)	94, 818, 842
BsuRI	GGCC	3 cut(s)	431, 660, 759
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	156, 581
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	722
Cfr13I	GGNCC	3 cut(s)	146, 659, 757
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	291, 455
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	426, 599
DpnI	GATC	1 cut(s)	589
DpnII	GATC	1 cut(s)	587
Eam1104I	CTCTTC	4 cut(s)	52, 257, 374, 861
EarI	CTCTTC	4 cut(s)	52, 257, 374, 861
Eco105I	TACGTA	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	641
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	294, 458
FaiI	YATR	6 cut(s)	114, 292, 362, 456, 552, 684
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	3 cut(s)	67, 132, 352
FatI	CATG	2 cut(s)	290, 454
Fnu4HI	GCNGC	6 cut(s)	6, 18, 185, 231, 251, 723
FokI	GGATG	2 cut(s)	143, 588
Fsp4HI	GCNGC	6 cut(s)	6, 18, 185, 231, 251, 723
GluI	GCNGC	6 cut(s)	6, 18, 185, 231, 251, 723
HaeIII	GGCC	3 cut(s)	431, 660, 759
HapII	CCGG	2 cut(s)	144, 414
HgaI	GACGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	294, 458
HincII	GTYRAC	1 cut(s)	890
HindII	GTYRAC	1 cut(s)	890
HindIII	AAGCTT	2 cut(s)	107, 554
HinfI	GANTC	5 cut(s)	410, 800, 824, 848, 899
HpaII	CCGG	2 cut(s)	144, 414
HphI	GGTGA	3 cut(s)	809, 833, 857
Hpy166II	GTNNAC	1 cut(s)	890
Hpy188I	TCNGA	4 cut(s)	300, 479, 602, 616
Hpy188III	TCNNGA	5 cut(s)	316, 355, 804, 828, 852
Hpy8I	GTNNAC	1 cut(s)	890
Hpy99I	CGWCG	2 cut(s)	156, 356
HpyAV	CCTTC	5 cut(s)	43, 47, 519, 672, 739
HpyCH4III	ACNGT	2 cut(s)	304, 343
HpyCH4IV	ACGT	3 cut(s)	276, 351, 561
HpyCH4V	TGCA	5 cut(s)	20, 197, 491, 725, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 722
HpyF3I	CTNAG	2 cut(s)	426, 599
HpySE526I	ACGT	3 cut(s)	276, 351, 561
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	294, 458
Kzo9I	GATC	1 cut(s)	587
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	2 cut(s)	103, 177
Lsp1109I	GCAGC	4 cut(s)	4, 171, 262, 709
LweI	GCATC	1 cut(s)	165
MaeII	ACGT	3 cut(s)	276, 351, 561
MaeIII	GTNAC	3 cut(s)	400, 821, 845
MalI	GATC	1 cut(s)	589
MboI	GATC	1 cut(s)	587
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	818, 842
MseI	TTAA	2 cut(s)	501, 768
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	144, 414
MspR9I	CCNGG	2 cut(s)	415, 643
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	2 cut(s)	14, 722
NciI	CCSGG	1 cut(s)	415
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	587
NlaIII	CATG	2 cut(s)	294, 458
NlaIV	GGNNCC	2 cut(s)	99, 148
NmuCI	GTSAC	3 cut(s)	400, 821, 845
PciSI	GCTCTTC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	410, 800, 899
PkrI	GCNGC	6 cut(s)	7, 19, 186, 232, 252, 724
PleI	GAGTC	2 cut(s)	818, 842
PpsI	GAGTC	2 cut(s)	818, 842
Ppu21I	YACGTR	2 cut(s)	277, 562
PshBI	ATTAAT	1 cut(s)	768
PsiI	TTATAA	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	2 cut(s)	99, 148
PspPI	GGNCC	3 cut(s)	146, 659, 757
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	501, 768
SatI	GCNGC	6 cut(s)	6, 18, 185, 231, 251, 723
Sau3AI	GATC	1 cut(s)	587
Sau96I	GGNCC	3 cut(s)	146, 659, 757
SchI	GAGTC	2 cut(s)	818, 842
ScrFI	CCNGG	2 cut(s)	415, 643
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SnaBI	TACGTA	1 cut(s)	277
SsiI	CCGC	3 cut(s)	5, 230, 518
StyD4I	CCNGG	2 cut(s)	413, 641
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	304, 343
TaiI	ACGT	3 cut(s)	279, 354, 564
TaqI	TCGA	1 cut(s)	354
TauI	GCSGC	2 cut(s)	8, 233
TfiI	GAWTC	3 cut(s)	410, 800, 899
Tru1I	TTAA	2 cut(s)	501, 768
Tru9I	TTAA	2 cut(s)	501, 768
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	3 cut(s)	400, 821, 845
TseI	GCWGC	4 cut(s)	17, 184, 250, 722
Tsp45I	GTSAC	3 cut(s)	400, 821, 845
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	146
VspI	ATTAAT	1 cut(s)	768
XapI	RAATTY	4 cut(s)	283, 443, 619, 776
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.