Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Forward (+)

4633833 .. 4636732

Gene Structure 2900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1035700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGGCATTTGAGGCTGCACTCTCTGTCCCCTTCCTCTACTCCTCTTCTTTTCCTTGTTATTCCTCCATACTCAACTCGTCCCCCAGACAATCGGCTCCCCTCAAGCTTCATATGCCCAATTCTACGCCTCCCAATTCCCTCAATTTTCTTCTTTCCGGTCCCCGACGCATCCCCACAAGAAAGCTCCGTTTTGAGCTGCTGTGCTCTGCGGTGGAGGAGATTACAGCAGAAGAAGAAAAAGCAGCAGTAGAAGAAGGCCAGCAGCAAAACCAGAAGAGAAAGCTGTACGTAGTGAATTTGCCATGGTCTCTGACTGTGGTGGATATCAAGAACCTCTTTGGCGAATGTGGGACTGTCAAAGACGTCGAGATTATAAAGCAACAAAATGGGAAGAGCAGAGGCTTTGCGTTTGTGACAATGGATTCCGGGGAAGAAGCTCAGGCCGTCATTGATAAATTTCACTCTCATGAGGTGTTGGGTAGGACTATCAGAATTGAGTTTGCAAAGCAATTTAAGAAACCTTCCCCACCGCCCTCCAATCCCCAAATTGGAGAGACACGATATAAGCTTTACGTGTCTAATTTGGGATGGAAAGTAAGATCAAGCCATCTCAGAGATTTTGTCTCTGAAAATTTCAAAGTTCCAGTTTCAGCCAGGGTTGTCTTTAGTGGCCCTTCTGGGAAGTCTGGTGGTTATGGATTTCTTTCTTTTACAACAAAGGAGGAAGCAGAGGCTGCAATTTCTTCTTTGCAAGGGAAGGAATTGATGGGCCGACTAATTAATCTAAAATTTAGTGAGAAGAATGTTGGTGATTCTGGAAGCCAAAATGTTGGTGACTCTGGAAGCCAAAAGGAAGAGGGAGATAGTTTTGAGGGTCAACCTGAAGAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

299

Amino Acids

32.86

Weight (kDa)

7.68

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 165	3.3e-17	RNA recognition motif
RRM_1	PF00076	191 - 261	2.2e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AatII	GACGTC	1 cut(s)	369
AciI	CCGC	3 cut(s)	5, 212, 533
AcsI	RAATTY	4 cut(s)	298, 458, 634, 791
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	656
AluBI	AGCT	6 cut(s)	109, 187, 199, 286, 440, 571
AluI	AGCT	6 cut(s)	109, 187, 199, 286, 440, 571
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	3 cut(s)	315, 551, 631
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	4 cut(s)	259, 444, 673, 772
ApeKI	GCWGC	5 cut(s)	17, 199, 245, 265, 737
ApoI	RAATTY	4 cut(s)	298, 458, 634, 791
AseI	ATTAAT	1 cut(s)	783
AspS9I	GGNCC	3 cut(s)	161, 674, 772
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	824, 848
AvaII	GGWCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	5 cut(s)	4, 186, 257, 277, 724
BccI	CCATC	3 cut(s)	585, 618, 763
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	315, 551, 631
BisI	GCNGC	6 cut(s)	6, 18, 200, 246, 266, 738
BlsI	GCNGC	6 cut(s)	7, 19, 201, 247, 267, 739
Bme1390I	CCNGG	2 cut(s)	430, 658
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	161, 674, 772
BmiI	GGNNCC	2 cut(s)	99, 163
BmrFI	CCNGG	2 cut(s)	430, 658
BmsI	GCATC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	430
BsaAI	YACGTR	2 cut(s)	292, 577
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	305, 429, 657
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	647
BseBI	CCWGG	1 cut(s)	658
BseDI	CCNNGG	3 cut(s)	305, 429, 657
BseGI	GGATG	2 cut(s)	171, 596
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	455, 628
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	2 cut(s)	34, 233
BseXI	GCAGC	5 cut(s)	4, 186, 257, 277, 724
BshFI	GGCC	4 cut(s)	261, 446, 675, 774
BsiHKAI	GWGCWC	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	159, 429
BslFI	GGGAC	4 cut(s)	14, 67, 147, 367
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	3 cut(s)	315, 551, 631
BsmFI	GGGAC	4 cut(s)	14, 67, 147, 367
BsnI	GGCC	4 cut(s)	261, 446, 675, 774
Bso31I	GGTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	602
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	3 cut(s)	5, 212, 533
BspANI	GGCC	4 cut(s)	261, 446, 675, 774
BspCNI	CTCAG	2 cut(s)	454, 627
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	99, 163
BspQI	GCTCTTC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	3 cut(s)	305, 429, 657
BssMI	GATC	1 cut(s)	602
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	658
Bst4CI	ACNGT	2 cut(s)	319, 358
Bst6I	CTCTTC	4 cut(s)	52, 272, 389, 852
BstACI	GRCGYC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	2 cut(s)	292, 577
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	441, 614
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	171, 596
BstKTI	GATC	1 cut(s)	605
BstMAI	GTCTC	3 cut(s)	315, 551, 631
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 115, 737
BstNI	CCWGG	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	428, 656
BstSNI	TACGTA	1 cut(s)	292
BstV1I	GCAGC	5 cut(s)	4, 186, 257, 277, 724
BstXI	CCANNNNNNTGG	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	261, 446, 675, 774
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	171, 596
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	161, 674, 772
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	306, 470
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	441, 614
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
Eam1104I	CTCTTC	4 cut(s)	52, 272, 389, 852
EarI	CTCTTC	4 cut(s)	52, 272, 389, 852
Eco105I	TACGTA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	656
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	2 cut(s)	309, 473
FaiI	YATR	8 cut(s)	71, 114, 116, 307, 377, 471, 567, 699
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	4 cut(s)	14, 67, 147, 367
FatI	CATG	2 cut(s)	305, 469
FauNDI	CATATG	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	6, 18, 200, 246, 266, 738
FokI	GGATG	2 cut(s)	158, 603
Fsp4HI	GCNGC	6 cut(s)	6, 18, 200, 246, 266, 738
GluI	GCNGC	6 cut(s)	6, 18, 200, 246, 266, 738
HaeIII	GGCC	4 cut(s)	261, 446, 675, 774
HapII	CCGG	2 cut(s)	159, 429
HgaI	GACGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	309, 473
HincII	GTYRAC	1 cut(s)	881
HindII	GTYRAC	1 cut(s)	881
HindIII	AAGCTT	2 cut(s)	107, 569
HinfI	GANTC	4 cut(s)	425, 815, 839, 890
HpaII	CCGG	2 cut(s)	159, 429
HphI	GGTGA	2 cut(s)	824, 848
Hpy166II	GTNNAC	1 cut(s)	881
Hpy188I	TCNGA	4 cut(s)	315, 494, 617, 631
Hpy188III	TCNNGA	5 cut(s)	331, 370, 470, 819, 843
Hpy8I	GTNNAC	1 cut(s)	881
Hpy99I	CGWCG	2 cut(s)	171, 371
HpyAV	CCTTC	5 cut(s)	43, 251, 534, 687, 754
HpyCH4III	ACNGT	2 cut(s)	319, 358
HpyCH4IV	ACGT	3 cut(s)	291, 366, 576
HpyCH4V	TGCA	4 cut(s)	20, 506, 740, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 115, 737
HpyF3I	CTNAG	2 cut(s)	441, 614
HpySE526I	ACGT	3 cut(s)	291, 366, 576
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	309, 473
Kzo9I	GATC	1 cut(s)	602
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	2 cut(s)	103, 192
Lsp1109I	GCAGC	5 cut(s)	4, 186, 257, 277, 724
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	3 cut(s)	291, 366, 576
MaeIII	GTNAC	2 cut(s)	415, 836
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	833
MseI	TTAA	2 cut(s)	516, 783
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	2 cut(s)	159, 429
MspR9I	CCNGG	2 cut(s)	430, 658
MvaI	CCWGG	1 cut(s)	658
MwoI	GCNNNNNNNGC	3 cut(s)	14, 115, 737
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	305
NdeI	CATATG	1 cut(s)	114
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	2 cut(s)	309, 473
NlaIV	GGNNCC	2 cut(s)	99, 163
NmuCI	GTSAC	2 cut(s)	415, 836
PagI	TCATGA	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	425, 815, 890
PkrI	GCNGC	6 cut(s)	7, 19, 201, 247, 267, 739
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
Ppu21I	YACGTR	2 cut(s)	292, 577
PshBI	ATTAAT	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	656
PspN4I	GGNNCC	2 cut(s)	99, 163
PspPI	GGNCC	3 cut(s)	161, 674, 772
PstNI	CAGNNNCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	516, 783
SatI	GCNGC	6 cut(s)	6, 18, 200, 246, 266, 738
Sau3AI	GATC	1 cut(s)	602
Sau96I	GGNCC	3 cut(s)	161, 674, 772
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	2 cut(s)	430, 658
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	180
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SnaBI	TACGTA	1 cut(s)	292
SsiI	CCGC	3 cut(s)	5, 212, 533
StyD4I	CCNGG	2 cut(s)	428, 656
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	319, 358
TaiI	ACGT	3 cut(s)	294, 369, 579
TaqI	TCGA	1 cut(s)	369
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	425, 815, 890
Tru1I	TTAA	2 cut(s)	516, 783
Tru9I	TTAA	2 cut(s)	516, 783
TseFI	GTSAC	2 cut(s)	415, 836
TseI	GCWGC	5 cut(s)	17, 199, 245, 265, 737
Tsp45I	GTSAC	2 cut(s)	415, 836
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	161
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	4 cut(s)	298, 458, 634, 791
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.