Rh3DG312200

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008483
Physical Location & Seq
Reverse (-)
33554052 .. 33555575
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG312200.1

Sequence Viewer

Length: 411 bp
ATGATCCACATACCAGAGAGACCGCCAGTGAAGCGACCAGATTCTGATCAGGTCCCTACCATGGAGCAACTGGAGCATACTAGACAGGGTCTATGGACCCTGGCTACCTGCCGAGATTTGTCAATATGGGTTTACCTGTTTGGAGAATGTGAGGATGTTAAAGACGTTGAGATTATAAAGCAACAAGATGGGTGGAACAGAGGCTTTGCATTTGTCACAATGGCTTCTGGGGAAGAAGCTCAGGCTGTCATTGATAAATTTGATTCTCAGGGATTGATGGGGCGGCCGGTGAATCTGAAATTTAGTGAGAAAAATGTAGGTGAATCTACAAGCCAAGAGGAAAATGTTGACTCCAACCAAAATGAAAAGGAGGAGGAAGAGAAATTGGAGAGTCAGCCTGAAGAATCATAA

Protein Analysis

136

Amino Acids

15.57

Weight (kDa)

4.43

Isoelectric Point (pI)

66.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 46 - 97 2.2e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 116
AciI CCGC 2 cut(s) 23, 283
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 2 cut(s) 257, 299
AfiI CCNNNNNNNGG 1 cut(s) 61
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 257, 299
AspS9I GGNCC 2 cut(s) 52, 96
AsuHPI GGTGA 2 cut(s) 301, 332
AvaII GGWCC 2 cut(s) 52, 96
BccI CCATC 2 cut(s) 182, 271
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 2 cut(s) 52, 96
BmgT120I GGNCC 2 cut(s) 52, 96
BmiI GGNNCC 2 cut(s) 54, 98
BmrFI CCNGG 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 60, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 26, 75
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 60, 99
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 254, 281
BseNI ACTGG 2 cut(s) 26, 75
BseRI GAGGAG 1 cut(s) 386
BseX3I CGGCCG 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 286
BsiEI CGRYCG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 3, 46
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 2 cut(s) 23, 283
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 253, 280
BspLI GGNNCC 2 cut(s) 54, 98
BspMI ACCTGC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 26, 75
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 60, 99
BssMI GATC 2 cut(s) 3, 46
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 240, 267
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 6, 49
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 3, 46
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 31, 73
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 284
BsuRI GGCC 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 116
CaiI CAGNNNCTG 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 52, 96
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 1 cut(s) 61
CviJI RGCY 8 cut(s) 104, 204, 224, 239, 245, 286, 333, 397
CviKI_1 RGCY 8 cut(s) 104, 204, 224, 239, 245, 286, 333, 397
DdeI CTNAG 2 cut(s) 240, 267
DpnI GATC 2 cut(s) 5, 48
DpnII GATC 2 cut(s) 3, 46
EaeI YGGCCR 1 cut(s) 284
EagI CGGCCG 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 52, 96
Eco52I CGGCCG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 64
FaiI YATR 7 cut(s) 11, 62, 78, 94, 127, 176, 409
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 60
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 284
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 287
Hin1II CATG 1 cut(s) 64
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 7 cut(s) 41, 263, 292, 323, 350, 391, 404
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 301, 332
Hpy166II GTNNAC 2 cut(s) 133, 349
Hpy188I TCNGA 2 cut(s) 46, 297
Hpy8I GTNNAC 2 cut(s) 133, 349
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 73
HpyF3I CTNAG 2 cut(s) 240, 267
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 3, 46
LmnI GCTCC 2 cut(s) 64, 73
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 5, 48
MboI GATC 2 cut(s) 3, 46
MboII GAAGA 2 cut(s) 245, 389
MluCI AATT 3 cut(s) 257, 299, 383
MlyI GAGTC 2 cut(s) 344, 400
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 5 cut(s) 145, 194, 331, 364, 367
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 31, 73
NcoI CCATGG 1 cut(s) 60
NdeII GATC 2 cut(s) 3, 46
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 54, 98
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 214
PfeI GAWTC 5 cut(s) 41, 263, 292, 323, 404
PflFI GACNNNGTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 2 cut(s) 344, 399
PpsI GAGTC 2 cut(s) 344, 399
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 54, 98
PspPI GGNCC 2 cut(s) 52, 96
PspPPI RGGWCCY 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 2 cut(s) 3, 46
Sau96I GGNCC 2 cut(s) 52, 96
SchI GAGTC 2 cut(s) 344, 400
ScrFI CCNGG 1 cut(s) 101
SetI ASST 6 cut(s) 54, 110, 138, 168, 241, 322
SinI GGWCC 2 cut(s) 52, 96
Sse9I AATT 3 cut(s) 257, 299, 383
SsiI CCGC 2 cut(s) 23, 283
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 168
TasI AATT 3 cut(s) 257, 299, 383
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 5 cut(s) 41, 263, 292, 323, 404
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 378
TspRI CASTG 1 cut(s) 33
Tth111I GACNNNGTC 1 cut(s) 87
VpaK11BI GGWCC 2 cut(s) 52, 96
XapI RAATTY 2 cut(s) 257, 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.