Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Forward (+)

13717863 .. 13722174

Gene Structure 4312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGGCATTTGAAGCTGCACTGTCACTCCCCTCACTCTACTCTCCTTGTTCCTCTAAAACCCTCTCCTTTCCTAAACCCTTAAACCTTCGTCTTCCCAGTTTCATCCCTCCCATCTCCCACAACTTCCTCCTCTCCTCACCCCCACTTATCCCCGCAAGAAAACTCTCTTTCGAGCTTTTGTGCTCCGCGGTGCAGGAGATCACAACCCAGGAAGAAGAACAAGCAGAACAAGAATCAGCGGAAGAGAAAACCCAGAAGCAGCAGAACCTCAAGAGGAAGCTGTACGTGGTGAACTTGCCTTGGTCCCTCACTGTGGCCGATATCAAGACGCTGTTTGGACAATGTGGGCATGTTAAAGACGTTGAGATTATAAAGCAAATGGATGGGAGGAACAGGGGCTTTGCATTTGTCACAATGGCTTCTGGGGAAGAAGCTCAGGCTGTCATTGATAAATTTGACTCTCAGGAGCTATCAGGTAGAACTGTCAAGGTAGAGTTTGCAAAGCAATTCAAGAAACCAACTCCACGTCCTTCAACCCCTAAAGTTCAAGAGACTCGCTATAAACTATATGTCTCCAATTTGGCATGGAAAGCAAGATCAAGCCATCTCAGAGACTTTGTCTCTTTGAATTTTAAAACTCCAGTTTCTGCCCGAGTTGTCTTTGATGGGCCTTCAGGGAAATCTGTCGGATATGGATTTGTTTCTTTCGCTAGAATGGAGGAGGCAGAGGAGGCAATATCTGCTTTGAATGGGCAGGAATTGATGGGGAGGCCAGTGACTCTAAAGTTTAGTGAGAAAAATATAGGTGAATCTACAAACCAAGAGGAAAAGGACAACTCCAACCAAGAAGAAAAGGTGGAGGAAGAGAAATTGGAGAATCAGCCTGAAGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

300

Amino Acids

33.53

Weight (kDa)

5.86

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	95 - 164	2.3e-17	RNA recognition motif
RRM_1	PF00076	190 - 260	1.9e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccII	CGCG	1 cut(s)	191
AciI	CCGC	5 cut(s)	5, 156, 189, 191, 242
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	2 cut(s)	455, 631
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	6 cut(s)	14, 514, 537, 551, 631, 751
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	5 cut(s)	17, 178, 283, 437, 472
AluI	AGCT	5 cut(s)	17, 178, 283, 437, 472
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	4 cut(s)	548, 580, 609, 628
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	3 cut(s)	318, 671, 773
ApeKI	GCWGC	2 cut(s)	17, 262
ApoI	RAATTY	2 cut(s)	455, 631
AspS9I	GGNCC	2 cut(s)	306, 671
AsuHPI	GGTGA	3 cut(s)	132, 304, 821
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	4, 274
BccI	CCATC	5 cut(s)	122, 380, 615, 662, 760
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	4 cut(s)	548, 580, 609, 628
BfaI	CTAG	1 cut(s)	714
BisI	GCNGC	3 cut(s)	6, 18, 263
BlsI	GCNGC	3 cut(s)	7, 19, 264
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	306, 671
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	189, 210, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	3 cut(s)	99, 644, 776
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	189, 210, 302
BseGI	GGATG	2 cut(s)	105, 391
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	3 cut(s)	452, 479, 625
BseNI	ACTGG	3 cut(s)	99, 644, 776
BseRI	GAGGAG	4 cut(s)	122, 127, 737, 746
BseXI	GCAGC	2 cut(s)	4, 274
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	320, 673, 775
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	4 cut(s)	548, 580, 609, 628
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	320, 673, 775
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	201, 599
BspACI	CCGC	5 cut(s)	5, 156, 189, 191, 242
BspANI	GGCC	3 cut(s)	320, 673, 775
BspCNI	CTCAG	3 cut(s)	451, 478, 624
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	99, 644, 776
BssECI	CCNNGG	3 cut(s)	189, 210, 302
BssMI	GATC	2 cut(s)	201, 599
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	24, 316, 487
Bst6I	CTCTTC	2 cut(s)	240, 861
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstBAI	YACGTR	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	438, 465, 611
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	105, 391
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	204, 602
BstMAI	GTCTC	4 cut(s)	548, 580, 609, 628
BstMBI	GATC	2 cut(s)	201, 599
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 593, 734, 743
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	4, 274
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	320, 673, 775
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	105, 391
BtsIMutI	CAGTG	3 cut(s)	20, 312, 783
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	306, 671
Cfr42I	CCGCGG	1 cut(s)	192
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	353, 588
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	438, 465, 611
DpnI	GATC	2 cut(s)	203, 601
DpnII	GATC	2 cut(s)	201, 599
DraI	TTTAAA	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	240, 861
EarI	CTCTTC	2 cut(s)	240, 861
Eco130I	CCWWGG	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	356, 591
FaiI	YATR	9 cut(s)	354, 374, 564, 571, 573, 589, 696, 806, 898
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	2 cut(s)	352, 587
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	6, 18, 263
FokI	GGATG	2 cut(s)	92, 398
Fsp4HI	GCNGC	3 cut(s)	6, 18, 263
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	3 cut(s)	6, 18, 263
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	320, 673, 775
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	356, 591
HinfI	GANTC	7 cut(s)	236, 461, 556, 781, 812, 880, 893
HphI	GGTGA	3 cut(s)	132, 304, 821
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	614, 692
Hpy188III	TCNNGA	5 cut(s)	274, 328, 467, 514, 551
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	98, 543, 684
HpyCH4III	ACNGT	3 cut(s)	24, 316, 487
HpyCH4IV	ACGT	3 cut(s)	288, 363, 529
HpyCH4V	TGCA	4 cut(s)	20, 196, 407, 503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 593, 734, 743
HpyF3I	CTNAG	3 cut(s)	438, 465, 611
HpySE526I	ACGT	3 cut(s)	288, 363, 529
Hsp92II	CATG	2 cut(s)	356, 591
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	201, 599
LmnI	GCTCC	2 cut(s)	191, 469
Lsp1109I	GCAGC	2 cut(s)	4, 274
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	3 cut(s)	288, 363, 529
MaeIII	GTNAC	3 cut(s)	24, 412, 778
MalI	GATC	2 cut(s)	203, 601
MboI	GATC	2 cut(s)	201, 599
MboII	GAAGA	7 cut(s)	86, 227, 230, 257, 443, 863, 878
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	6 cut(s)	455, 509, 580, 631, 761, 872
MlyI	GAGTC	3 cut(s)	455, 550, 775
MmeI	TCCRAC	2 cut(s)	670, 867
MseI	TTAA	3 cut(s)	83, 357, 636
MspA1I	CMGCKG	2 cut(s)	191, 242
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	14, 593, 734, 743
NdeII	GATC	2 cut(s)	201, 599
NlaIII	CATG	2 cut(s)	356, 591
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	3 cut(s)	24, 412, 778
NspI	RCATGY	1 cut(s)	356
PfeI	GAWTC	4 cut(s)	236, 812, 880, 893
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	7, 19, 264
PleI	GAGTC	3 cut(s)	455, 550, 775
PpsI	GAGTC	3 cut(s)	455, 550, 775
Ppu21I	YACGTR	1 cut(s)	289
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	2 cut(s)	306, 671
PstNI	CAGNNNCTG	1 cut(s)	650
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	83, 357, 636
SatI	GCNGC	3 cut(s)	6, 18, 263
Sau3AI	GATC	2 cut(s)	201, 599
Sau96I	GGNCC	2 cut(s)	306, 671
SchI	GAGTC	3 cut(s)	455, 550, 775
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	6 cut(s)	455, 509, 580, 631, 761, 872
SsiI	CCGC	5 cut(s)	5, 156, 189, 191, 242
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	24, 316, 487
TaiI	ACGT	3 cut(s)	291, 366, 532
TaqI	TCGA	1 cut(s)	174
TasI	AATT	6 cut(s)	455, 509, 580, 631, 761, 872
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	236, 812, 880, 893
Tru1I	TTAA	3 cut(s)	83, 357, 636
Tru9I	TTAA	3 cut(s)	83, 357, 636
TscAI	CASTG	3 cut(s)	27, 319, 783
TseFI	GTSAC	3 cut(s)	24, 412, 778
TseI	GCWGC	2 cut(s)	17, 262
Tsp45I	GTSAC	3 cut(s)	24, 412, 778
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	3 cut(s)	27, 319, 783
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	455, 631
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.