Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008483

Physical Location & Seq

Genomic Coordinates Reverse (-)

9261645 .. 9262937

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTGGAGAACGATTATGAGTGGAATATTCCACTTTTGGAAGCTTTATTTACACCAATGGAAGTTGGCATAATTGCAAGTATCCCTCTAAGCCTTAGAGGAGCAGATGACAGCTTTGTGTGGCACTATGACAAGAGAGGAAACTATGGAGTGAGAAGTGGATACCATGTGGCCCGCCTTGATGATGGTAGATCTGACCGGGCTTCTAGCTCAAATGGGTCTTATGGAATTAATGCCACTTACTGGAAGATAATTTGGGGGGCCAACATCCCACCCAAAGTGCGTGTGTTTATTTGGAGACTACTCAGAGGCATTTTACCTACAAGAAGAGCTCTCTCCCATAAGGTTAGTCTTCTTGATAGTAATTGTCTTTTCTGTAATCATGCATTAGAAGATGGATTACACCTGTTCAGAGATTGTGATGTTACTACATGCTTTTGGGTGTGTACCAAATTGGGCCTTTTGGCCAAGAATGTGGCTGCTTCATGTGTGGAGGATTGGGTGTTGAACGTCATTGAAAAATTGGATGGTAATCAACGTTGTGCTTTTTTCATGGCACTCTGGGTCATATGGTCTGAAAGAAATAATGTCTTGTGGAACGAGAGTTTCTTCTGTGCCTCTAATGCGGCACAGTGGGCTAGTAAATTTCTTGAGGAATATCAGCAATTTCATGTGCATGGAAATGCGAAAGGTAGAAGGGAAAAGACCAAATGGCAGAACCCTCCTAGTGGGCGTCTGAAAGTGAATGTGGATGGGAGTTACCGGGCTGATTACGGTGATGGTGGAGTGGGAGTTGTGATACGTGATGAAAATGGTATGTGCTTGGCAGCTCTGGCTCGGTATTTCCCACATGCTTCATCTGCTTTACATATGGAGGCTGAAGCATGTAGGGCTGGGCTCTTATTGGCGATCCATCAGGACATGACCGTTATTGATGTTGAGAGCGATTGCTCCCTTGTTGTTACTGCTCTACAGCGTGATGTGGAAGATAGATCTGAAATTGGGCGTATTATCGATGATTGTAAGTCATATTTGACATCTTTTCACTCAATTCAGGTTAGTCACATCTTCCGTGAAGCAAACGGTGTAGCCAACAGGTTAGCGCACCTTGCTAGTTTTAATTACATTTCTGATGTATGGTTAGATGAAACTCCTGTTATTATTCGGGATGTTCTCTATGAGGATGTTTGTAATCTTTCTAATGTAGCACGGGGTTCAGGTTTTATGTCCCCCCCGTTGCAAAGTATTACTTCAATAAATGGAACCGGGCATGGGGCTGAACCTCCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

RRM_1

Protein Analysis

430

Amino Acids

48.15

Weight (kDa)

5.87

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	79 - 147	3.1e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	249 - 370	1.3e-26	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35410
fragaria_vesca	FvH4_5g22330 FvH4_5g22330
malus_domestica	MD06G1035700.v1.1
prunus_persica	Prupe.5G034000_v2.0.a1 Prupe.5G034000_v2.0.a1
pyrus_communis	pycom06g02960 pycom16g24260
rosa_chinensis	RchiOBHm_Chr7g0210041
rosa_laevigata	RLG00000003069
rosa_multiflora	Rmu_sc0004509.1_g000027
rosa_roxburghii	Rroxscaffold_3G00248660 Rroxscaffold_5G00364890
rosa_rugosa	Rorug07G0118000
rosa_samantha	Rh3DG312200 Rh4DG124600 Rh5CG433700 Rh6AG038800 Rh7AG251800 Rh7BG246400 Rh7CG268600 Rh7DG258700
rosa_wichuraiana	Rw7G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AciI	CCGC	2 cut(s)	175, 626
AclI	AACGTT	1 cut(s)	538
AclWI	GGATC	1 cut(s)	904
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	900
AcyI	GRCGYC	1 cut(s)	733
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	243, 728, 1272
AgsI	TTSAA	3 cut(s)	508, 518, 1254
AluBI	AGCT	6 cut(s)	44, 114, 210, 332, 830, 1290
AluI	AGCT	6 cut(s)	44, 114, 210, 332, 830, 1290
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	904
AoxI	GGCC	4 cut(s)	171, 261, 457, 465
ApeKI	GCWGC	2 cut(s)	479, 827
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	1105
AspS9I	GGNCC	3 cut(s)	172, 261, 457
AsuC2I	CCSGG	3 cut(s)	200, 764, 1267
AsuHPI	GGTGA	1 cut(s)	788
BalI	TGGCCA	1 cut(s)	467
BanII	GRGCYC	2 cut(s)	334, 900
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	466, 839
BccI	CCATC	6 cut(s)	179, 389, 521, 746, 773, 921
BciVI	GTATCC	2 cut(s)	92, 155
BcnI	CCSGG	3 cut(s)	200, 764, 1267
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	5 cut(s)	207, 639, 726, 1113, 1291
BfmI	CTRYAG	1 cut(s)	971
BfuI	GTATCC	2 cut(s)	92, 155
BglII	AGATCT	2 cut(s)	191, 992
BisI	GCNGC	3 cut(s)	480, 627, 828
BlsI	GCNGC	3 cut(s)	481, 628, 829
Bme1390I	CCNGG	3 cut(s)	200, 764, 1267
BmgT120I	GGNCC	3 cut(s)	172, 261, 457
BmiI	GGNNCC	2 cut(s)	262, 1264
BmrFI	CCNGG	3 cut(s)	200, 764, 1267
BpiI	GAAGAC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	3 cut(s)	200, 764, 1267
Bsa29I	ATCGAT	1 cut(s)	1014
BsaAI	YACGTR	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	733
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 728, 1272
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	1014
BseGI	GGATG	5 cut(s)	267, 532, 757, 1174, 1189
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	243, 728, 1272
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	466, 839
BseYI	CCCAGC	2 cut(s)	893, 1286
BshFI	GGCC	4 cut(s)	173, 263, 459, 467
BshVI	ATCGAT	1 cut(s)	1014
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	199, 763, 1266
BslFI	GGGAC	1 cut(s)	1213
BslI	CCNNNNNNNGG	3 cut(s)	243, 728, 1272
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	1213
BsnI	GGCC	4 cut(s)	173, 263, 459, 467
Bsp1286I	GDGCHC	2 cut(s)	334, 900
Bsp143I	GATC	3 cut(s)	191, 909, 992
BspACI	CCGC	2 cut(s)	175, 626
BspANI	GGCC	4 cut(s)	173, 263, 459, 467
BspCNI	CTCAG	1 cut(s)	318
BspDI	ATCGAT	1 cut(s)	1014
BspLI	GGNNCC	2 cut(s)	262, 1264
BspPI	GGATC	1 cut(s)	904
BspQI	GCTCTTC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	3 cut(s)	191, 909, 992
BssNI	GRCGYC	1 cut(s)	733
Bst4CI	ACNGT	4 cut(s)	633, 776, 928, 1085
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	733
BstBAI	YACGTR	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	89, 95, 305
BstF5I	GGATG	5 cut(s)	267, 532, 757, 1174, 1189
BstHHI	GCGC	1 cut(s)	1105
BstKTI	GATC	3 cut(s)	194, 912, 995
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	191, 909, 992
BstMWI	GCNNNNNNNGC	6 cut(s)	623, 635, 833, 860, 890, 1109
BstNSI	RCATGY	3 cut(s)	435, 854, 888
BstSCI	CCNGG	3 cut(s)	198, 762, 1265
BstSFI	CTRYAG	1 cut(s)	971
BstV1I	GCAGC	2 cut(s)	466, 839
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	191, 992
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	2 cut(s)	191, 992
Bsu15I	ATCGAT	1 cut(s)	1014
BsuI	GTATCC	2 cut(s)	92, 155
BsuRI	GGCC	4 cut(s)	173, 263, 459, 467
BsuTUI	ATCGAT	1 cut(s)	1014
BtsCI	GGATG	5 cut(s)	267, 532, 757, 1174, 1189
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	1105
Cfr13I	GGNCC	3 cut(s)	172, 261, 457
ClaI	ATCGAT	1 cut(s)	1014
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	1 cut(s)	447
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	3 cut(s)	89, 95, 305
DpnI	GATC	3 cut(s)	193, 911, 994
DpnII	GATC	3 cut(s)	191, 909, 992
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	2 cut(s)	334, 900
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	900
EcoICRI	GAGCTC	1 cut(s)	332
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	2 cut(s)	334, 900
FalI	AAGNNNNNCTT	2 cut(s)	1234, 1266
FaqI	GGGAC	1 cut(s)	1213
FauI	CCCGC	1 cut(s)	182
FauNDI	CATATG	2 cut(s)	569, 870
Fnu4HI	GCNGC	3 cut(s)	480, 627, 828
FokI	GGATG	5 cut(s)	254, 539, 764, 1181, 1196
FriOI	GRGCYC	2 cut(s)	334, 900
Fsp4HI	GCNGC	3 cut(s)	480, 627, 828
FspBI	CTAG	5 cut(s)	207, 639, 726, 1113, 1291
GlaI	GCGC	1 cut(s)	1104
GluI	GCNGC	3 cut(s)	480, 627, 828
GsaI	CCCAGC	2 cut(s)	897, 1290
HaeIII	GGCC	4 cut(s)	173, 263, 459, 467
HapII	CCGG	3 cut(s)	199, 763, 1266
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	1 cut(s)	1105
Hin1I	GRCGYC	1 cut(s)	733
Hin6I	GCGC	1 cut(s)	1103
HinP1I	GCGC	1 cut(s)	1103
HindIII	AAGCTT	1 cut(s)	42
HpaII	CCGG	3 cut(s)	199, 763, 1266
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	7 cut(s)	196, 308, 413, 577, 738, 997, 1132
Hpy188III	TCNNGA	4 cut(s)	356, 650, 917, 1166
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	1 cut(s)	690
HpyCH4III	ACNGT	4 cut(s)	633, 776, 928, 1085
HpyCH4IV	ACGT	3 cut(s)	510, 538, 802
HpyCH4V	TGCA	4 cut(s)	77, 386, 676, 1240
HpyF10VI	GCNNNNNNNGC	6 cut(s)	623, 635, 833, 860, 890, 1109
HpyF3I	CTNAG	3 cut(s)	89, 95, 305
HpySE526I	ACGT	3 cut(s)	510, 538, 802
Hsp92I	GRCGYC	1 cut(s)	733
HspAI	GCGC	1 cut(s)	1103
Kzo9I	GATC	3 cut(s)	191, 909, 992
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	101, 956
Lsp1109I	GCAGC	2 cut(s)	466, 839
MaeI	CTAG	5 cut(s)	207, 639, 726, 1113, 1291
MaeII	ACGT	3 cut(s)	510, 538, 802
MaeIII	GTNAC	4 cut(s)	424, 758, 961, 1061
MalI	GATC	3 cut(s)	193, 911, 994
MboI	GATC	3 cut(s)	191, 909, 992
MboII	GAAGA	7 cut(s)	259, 339, 344, 404, 601, 998, 1060
MflI	RGATCY	2 cut(s)	191, 992
MhlI	GDGCHC	2 cut(s)	334, 900
MlsI	TGGCCA	1 cut(s)	467
MluNI	TGGCCA	1 cut(s)	467
Mox20I	TGGCCA	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	2 cut(s)	231, 1119
MslI	CAYNNNNRTG	2 cut(s)	675, 681
Msp20I	TGGCCA	1 cut(s)	467
MspI	CCGG	3 cut(s)	199, 763, 1266
MspR9I	CCNGG	3 cut(s)	200, 764, 1267
MwoI	GCNNNNNNNGC	6 cut(s)	623, 635, 833, 860, 890, 1109
NciI	CCSGG	3 cut(s)	200, 764, 1267
NdeI	CATATG	2 cut(s)	569, 870
NdeII	GATC	3 cut(s)	191, 909, 992
NlaIV	GGNNCC	2 cut(s)	262, 1264
NmuCI	GTSAC	1 cut(s)	1061
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	3 cut(s)	435, 854, 888
PciSI	GCTCTTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	481, 628, 829
Ppu21I	YACGTR	1 cut(s)	803
PshBI	ATTAAT	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	538
PspFI	CCCAGC	2 cut(s)	893, 1286
PspN4I	GGNNCC	2 cut(s)	262, 1264
PspPI	GGNCC	3 cut(s)	172, 261, 457
PsuI	RGATCY	2 cut(s)	191, 992
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	2 cut(s)	675, 681
SacI	GAGCTC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	231, 1119
SatI	GCNGC	3 cut(s)	480, 627, 828
Sau3AI	GATC	3 cut(s)	191, 909, 992
Sau96I	GGNCC	3 cut(s)	172, 261, 457
ScrFI	CCNGG	3 cut(s)	200, 764, 1267
SduI	GDGCHC	2 cut(s)	334, 900
SfcI	CTRYAG	1 cut(s)	971
SmiMI	CAYNNNNRTG	2 cut(s)	675, 681
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SsiI	CCGC	2 cut(s)	175, 626
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	5 cut(s)	207, 639, 726, 1113, 1291
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	198, 762, 1265
TaaI	ACNGT	4 cut(s)	633, 776, 928, 1085
TaiI	ACGT	3 cut(s)	513, 541, 805
TaqI	TCGA	1 cut(s)	1014
TauI	GCSGC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	231, 1119
Tru9I	TTAA	2 cut(s)	231, 1119
TscAI	CASTG	1 cut(s)	638
TseFI	GTSAC	1 cut(s)	1061
TseI	GCWGC	2 cut(s)	479, 827
Tsp45I	GTSAC	1 cut(s)	1061
TspDTI	ATGAA	6 cut(s)	474, 541, 659, 822, 846, 1161
TspGWI	ACGGA	1 cut(s)	1061
TspRI	CASTG	1 cut(s)	638
Van91I	CCANNNNNTGG	1 cut(s)	243
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	3 cut(s)	435, 854, 888
XspI	CTAG	5 cut(s)	207, 639, 726, 1113, 1291
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.