pycom16g24260

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0008483
Physical Location & Seq
Reverse (-)
25508474 .. 25509108
635 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g24260.1

Sequence Viewer

Length: 375 bp
ATGGCGGCATTTGAAGCCGCACTCTGTGTCTCCTCCCTCTACTCTTCTTTTCCTTGTTATTCCTCCAAATTCTTCTCATCCCCCAAACCGTCCGCTCCCCTCAAACTTCATATTTCCAATCCTACCCTCCCATTTCCCTCAATGATGGGGAATTTGCCATGGTCTCTTACTGTGGTGGATATCAAGAACCTCTTTGGCGAATGTGGGACTGTCCAAGACGTCGAGTTTGGGTATTTAATGTTAATATTTCAGATTATAAAGCAACAAAATGGGAAGAGCAGAGGCTTTGCGTTTGTGACAAAGGATTCCGGGGAAGAAGCTCTGGCTGCCATTGATAAATTTCACTCTCATGTATGTTATCCTGGTATTCTATGA

Protein Analysis

125

Amino Acids

13.61

Weight (kDa)

6.8

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 49 - 116 1.1e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AatII GACGTC 1 cut(s) 222
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 3 cut(s) 5, 18, 93
AcsI RAATTY 3 cut(s) 68, 151, 338
AcyI GRCGYC 1 cut(s) 219
AdeI CACNNNGTG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 34, 168
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 3 cut(s) 68, 151, 338
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AsuC2I CCSGG 1 cut(s) 310
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 363
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 34, 168
BisI GCNGC 3 cut(s) 6, 18, 327
BlsI GCNGC 3 cut(s) 7, 19, 328
Bme1390I CCNGG 2 cut(s) 310, 363
BmrFI CCNGG 2 cut(s) 310, 363
BpuMI CCSGG 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 158, 309
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 158, 309
BseGI GGATG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 2 cut(s) 34, 168
BsmFI GGGAC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 3 cut(s) 5, 18, 93
BspQI GCTCTTC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 158, 309
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 90, 172, 211
Bst6I CTCTTC 2 cut(s) 49, 269
BstACI GRCGYC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 77
BstMAI GTCTC 2 cut(s) 34, 168
BstMWI GCNNNNNNNGC 2 cut(s) 14, 326
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 308, 361
BstV1I GCAGC 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 77
CviAII CATG 2 cut(s) 159, 350
CviJI RGCY 4 cut(s) 17, 285, 320, 326
CviKI_1 RGCY 4 cut(s) 17, 285, 320, 326
DraIII CACNNNGTG 1 cut(s) 26
Eam1104I CTCTTC 2 cut(s) 49, 269
EarI CTCTTC 2 cut(s) 49, 269
Eco130I CCWWGG 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 162, 353
FaiI YATR 6 cut(s) 111, 160, 257, 351, 355, 373
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 158, 349
Fnu4HI GCNGC 3 cut(s) 6, 18, 327
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 6, 18, 327
GluI GCNGC 3 cut(s) 6, 18, 327
HapII CCGG 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 2 cut(s) 162, 353
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 309
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 224
HpyCH4III ACNGT 3 cut(s) 90, 172, 211
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 326
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 162, 353
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 308, 322, 348
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 295
MbiI CCGCTC 1 cut(s) 95
MboII GAAGA 4 cut(s) 36, 64, 286, 326
MluCI AATT 3 cut(s) 68, 151, 338
MnlI CCTC 8 cut(s) 43, 47, 73, 110, 137, 148, 200, 275
MseI TTAA 2 cut(s) 236, 242
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 310, 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 14, 326
NciI CCSGG 1 cut(s) 310
NcoI CCATGG 1 cut(s) 158
NlaIII CATG 2 cut(s) 162, 353
NmuCI GTSAC 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 7, 19, 328
PsiI TTATAA 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 236, 242
SatI GCNGC 3 cut(s) 6, 18, 327
ScrFI CCNGG 2 cut(s) 310, 363
SetI ASST 3 cut(s) 192, 222, 322
SgeI CNNG 9 cut(s) 66, 171, 196, 227, 235, 321, 322, 335, 362
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 3 cut(s) 68, 151, 338
SsiI CCGC 3 cut(s) 5, 18, 93
SspI AATATT 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 308, 361
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 3 cut(s) 90, 172, 211
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 222
TasI AATT 3 cut(s) 68, 151, 338
TauI GCSGC 2 cut(s) 8, 20
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 236, 242
Tru9I TTAA 2 cut(s) 236, 242
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 98
XapI RAATTY 3 cut(s) 68, 151, 338
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.