AT2G36145

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013540
Physical Location & Seq
Forward (+)
15168533 .. 15169514
982 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36145.1

Sequence Viewer

Length: 561 bp
ATGGCTTTCGCAGCGACGCTCTTCGTTCCACCTCCAGTAGCCGTCCGATCTCCGGCTAGATTCCTTGGCCGTCTCTCAATTCCTTGCCTGCTCCAAGTTCTTCCGACTAATGGTGCAGCGAGTCCCCGGCAAGTGAAGAGGGCAATTGTAGCAAATGCTTCGCCGGGAAACGGTGGCGTTAAGGCCGAGGAAGAAGACGGAGTTTCTCTGGGTACTATGAAGCTTCCCGTAGATACCGATCTCGCTAGATTCGAAACTCTTCTATTTCAGTGGGCGAATAGTCTTTGCCAAGGAGCCAATCTACCTCTACCTGTTCCTCTCAAGGTGGACAGAATAAGCGGAGGAGCGAGGTTAGGATTCATAGTGATGGAAGATGAAGGCAAGACCGATGTTCCGGTTTACATTGACTGTTTGGTTTTCCAAACAACAGAGAATGGTGTAGTGTTCCAAGCGACGCGTAATGGGCGGAAGAAAGATAAAGCACCTCCGGGAGAAGAAAGAATCATGAGAAGTCTCTTAGGAGCCCTCAAAAAAGCTGTGGAGATTGCTCGAGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.91

Weight (kDa)

9.33

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7148 PF23650 64 - 184 8.2e-57 Domain of unknown function (DUF7148)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 457
AciI CCGC 2 cut(s) 339, 466
AcoI YGGCCR 1 cut(s) 67
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 52, 110, 170
AflIII ACRYGT 1 cut(s) 455
AluBI AGCT 2 cut(s) 223, 536
AluI AGCT 2 cut(s) 223, 536
Alw26I GTCTC 2 cut(s) 77, 518
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 2 cut(s) 67, 183
ApeKI GCWGC 2 cut(s) 11, 116
Asp700I GAANNNNTTC 1 cut(s) 258
AsuC2I CCSGG 3 cut(s) 127, 165, 489
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 549
BanII GRGCYC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 23, 128
BccI CCATC 1 cut(s) 361
BceAI ACGGC 2 cut(s) 26, 54
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BcnI CCSGG 3 cut(s) 127, 165, 489
BcoDI GTCTC 2 cut(s) 77, 518
BfaI CTAG 2 cut(s) 57, 246
BisI GCNGC 2 cut(s) 12, 117
BlsI GCNGC 2 cut(s) 13, 118
Bme1390I CCNGG 3 cut(s) 127, 165, 489
BmeT110I CYCGRG 1 cut(s) 549
BmiI GGNNCC 2 cut(s) 295, 523
BmrFI CCNGG 3 cut(s) 127, 165, 489
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 3 cut(s) 127, 165, 489
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 64, 125, 186, 289
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 110, 170
Bse1I ACTGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 237
BseDI CCNNGG 4 cut(s) 64, 125, 186, 289
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 52, 110, 170
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 23, 128
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 69, 185
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 5 cut(s) 53, 127, 164, 395, 488
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 3 cut(s) 52, 110, 170
BsmAI GTCTC 2 cut(s) 77, 518
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 69, 185
BsoBI CYCGRG 1 cut(s) 549
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 2 cut(s) 47, 238
BspACI CCGC 2 cut(s) 339, 466
BspANI GGCC 2 cut(s) 69, 185
BspFNI CGCG 1 cut(s) 457
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 2 cut(s) 295, 523
BspQI GCTCTTC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 252
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 64, 125, 186, 289
BssMI GATC 2 cut(s) 47, 238
BssT1I CCWWGG 2 cut(s) 64, 289
Bst4CI ACNGT 2 cut(s) 173, 410
Bst6I CTCTTC 3 cut(s) 26, 131, 264
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 457
BstKTI GATC 2 cut(s) 50, 241
BstMAI GTCTC 2 cut(s) 77, 518
BstMBI GATC 2 cut(s) 47, 238
BstMWI GCNNNNNNNGC 3 cut(s) 11, 149, 463
BstSCI CCNGG 3 cut(s) 125, 163, 487
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 23, 128
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 69, 185
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 89
CciI TCATGA 1 cut(s) 504
CseI GACGC 2 cut(s) 25, 463
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 505
CviJI RGCY 9 cut(s) 5, 41, 56, 69, 185, 223, 296, 524, 536
CviKI_1 RGCY 9 cut(s) 5, 41, 56, 69, 185, 223, 296, 524, 536
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 517
DpnI GATC 2 cut(s) 49, 240
DpnII GATC 2 cut(s) 47, 238
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 26, 131, 264
EarI CTCTTC 3 cut(s) 26, 131, 264
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 64, 289
Eco24I GRGCYC 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 64, 289
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 2 cut(s) 64, 289
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 508
FaiI YATR 4 cut(s) 218, 362, 506, 559
FaqI GGGAC 1 cut(s) 108
FatI CATG 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 12, 117
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 2 cut(s) 12, 117
FspBI CTAG 2 cut(s) 57, 246
GluI GCNGC 2 cut(s) 12, 117
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 69, 185
HapII CCGG 5 cut(s) 53, 127, 164, 395, 488
HgaI GACGC 2 cut(s) 25, 463
Hin1II CATG 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 6 cut(s) 60, 121, 249, 357, 501, 552
HpaII CCGG 5 cut(s) 53, 127, 164, 395, 488
Hpy166II GTNNAC 2 cut(s) 328, 400
Hpy188I TCNGA 2 cut(s) 47, 105
Hpy188III TCNNGA 1 cut(s) 505
Hpy8I GTNNAC 2 cut(s) 328, 400
Hpy99I CGWCG 2 cut(s) 19, 457
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 173, 410
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 149, 463
HpyF3I CTNAG 1 cut(s) 517
Hsp92II CATG 1 cut(s) 508
Kzo9I GATC 2 cut(s) 47, 238
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 4 cut(s) 96, 293, 344, 521
LpnPI CCDG 9 cut(s) 48, 66, 101, 140, 177, 194, 324, 408, 501
Lsp1109I GCAGC 2 cut(s) 23, 128
MaeI CTAG 2 cut(s) 57, 246
MaeIII GTNAC 1 cut(s) 553
MalI GATC 2 cut(s) 49, 240
MboI GATC 2 cut(s) 47, 238
MboII GAAGA 9 cut(s) 13, 92, 148, 203, 206, 251, 383, 481, 506
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 2 cut(s) 78, 144
MluI ACGCGT 1 cut(s) 455
MlyI GAGTC 2 cut(s) 130, 561
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 9 cut(s) 42, 132, 181, 315, 327, 335, 342, 495, 536
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 5 cut(s) 53, 127, 164, 395, 488
MspR9I CCNGG 3 cut(s) 127, 165, 489
MunI CAATTG 1 cut(s) 144
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 3 cut(s) 11, 149, 463
NciI CCSGG 3 cut(s) 127, 165, 489
NdeII GATC 2 cut(s) 47, 238
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 2 cut(s) 295, 523
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 553
NspV TTCGAA 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 549
PagI TCATGA 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 4 cut(s) 60, 249, 357, 501
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 2 cut(s) 13, 118
PleI GAGTC 2 cut(s) 129, 560
PpsI GAGTC 2 cut(s) 129, 560
PspN4I GGNNCC 2 cut(s) 295, 523
PspXI VCTCGAGB 1 cut(s) 549
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 12, 117
Sau3AI GATC 2 cut(s) 47, 238
SchI GAGTC 2 cut(s) 130, 561
ScrFI CCNGG 3 cut(s) 127, 165, 489
SduI GDGCHC 1 cut(s) 526
SetI ASST 8 cut(s) 34, 225, 307, 313, 327, 353, 487, 538
Sfr274I CTCGAG 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 320, 549
SmoI CTYRAG 2 cut(s) 320, 549
Sse9I AATT 2 cut(s) 78, 144
SsiI CCGC 2 cut(s) 339, 466
SspMI CTAG 2 cut(s) 57, 246
StyD4I CCNGG 3 cut(s) 125, 163, 487
StyI CCWWGG 2 cut(s) 64, 289
TaaI ACNGT 2 cut(s) 173, 410
TaqI TCGA 2 cut(s) 252, 550
TaqII GACCGA 1 cut(s) 401
TasI AATT 2 cut(s) 78, 144
TfiI GAWTC 4 cut(s) 60, 249, 357, 501
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 275
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 2 cut(s) 11, 116
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 3 cut(s) 233, 349, 390
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 2 cut(s) 57, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.