Rroxscaffold_6G00407040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013540
Physical Location & Seq
Forward (+)
29595048 .. 29602779
7732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407040.1

Sequence Viewer

Length: 585 bp
ATGGCCGCTACTGCTGTGAATATGAAGCTACTCCACTTCCACTCCCCACGTGCCAATCCCCACCCGCCATCTTTCGCCCCACTCCTCACCAACACCACCACCAGCTATGCCTTCCCTAACAACCTCAGTTTACATTCCGGCCACTCCCACCACCCAAATCCAACGGCGGTCAAAGCGGCGCTGGATAAGGACAGCCTTGTTCCCTCCGACGACGCCGAAGATGGAGTCTTGCTTGGTACCATGAAATTGCCTGATGATACTGACTTTCCCAGATTCCAAATCTTGCTCTTCCAGTGGGCTAACAGTCTCTGCCAAGGAGCAAATCTACCGCTTGATATGCCTTTGAAGGTTGACAAAATAGCAGGTGGGACTAGATTGGGTTTCATTACAATTGGGGATGGGGAGACAGAGGTCATTGGCTACATTGATTGCTTGGTTTTCCCTCCAGAAGGTGGTTCCGGTCCCATTTTTCGAGCTGTTAGAAATGGACGTTTGAAGGATCAGGTCCTTCCCGGGGAGCCCAGGATCATGAGAAATCTTATGCAGGCTCTTCAGAAGTCGGTTCAAATCGCTAGAGTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.1

Weight (kDa)

6.64

Isoelectric Point (pI)

23.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7148 PF23650 73 - 192 1.6e-57 Domain of unknown function (DUF7148)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 353
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 452
AciI CCGC 5 cut(s) 6, 65, 167, 176, 329
AclWI GGATC 2 cut(s) 507, 533
AcoI YGGCCR 2 cut(s) 3, 139
AcuI CTGAAG 1 cut(s) 536
AcvI CACGTG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 449, 452, 514
AgsI TTSAA 3 cut(s) 346, 496, 566
AjnI CCWGG 1 cut(s) 521
AluBI AGCT 3 cut(s) 28, 105, 476
AluI AGCT 3 cut(s) 28, 105, 476
Alw26I GTCTC 2 cut(s) 311, 398
AlwI GGATC 2 cut(s) 507, 533
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 2 cut(s) 3, 139
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 461, 505
AsuC2I CCSGG 2 cut(s) 513, 514
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 2 cut(s) 461, 505
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 522
BbrPI CACGTG 1 cut(s) 50
BccI CCATC 3 cut(s) 76, 215, 392
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 523
BcnI CCSGG 2 cut(s) 513, 514
BcoDI GTCTC 2 cut(s) 311, 398
BfaI CTAG 2 cut(s) 372, 573
BfoI RGCGCY 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 2 cut(s) 6, 177
BlsI GCNGC 2 cut(s) 7, 178
Bme1390I CCNGG 3 cut(s) 513, 514, 523
Bme18I GGWCC 2 cut(s) 461, 505
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 461, 505
BmiI GGNNCC 4 cut(s) 238, 457, 463, 519
BmrFI CCNGG 3 cut(s) 513, 514, 523
BoxI GACNNNNGTC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 429
BpuMI CCSGG 2 cut(s) 513, 514
BsaAI YACGTR 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 313, 512, 513, 521
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 452, 514
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 4 cut(s) 313, 512, 513, 521
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 3 cut(s) 449, 452, 514
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 74
BshFI GGCC 2 cut(s) 5, 141
BshNI GGYRCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 3 cut(s) 138, 459, 513
BslFI GGGAC 2 cut(s) 382, 447
BslI CCNNNNNNNGG 3 cut(s) 449, 452, 514
BsmAI GTCTC 2 cut(s) 311, 398
BsmFI GGGAC 2 cut(s) 382, 447
BsnI GGCC 2 cut(s) 5, 141
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 2 cut(s) 499, 525
BspACI CCGC 5 cut(s) 6, 65, 167, 176, 329
BspANI GGCC 2 cut(s) 5, 141
BspCNI CTCAG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 4 cut(s) 238, 457, 463, 519
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 507, 533
BspQI GCTCTTC 2 cut(s) 293, 555
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 313, 512, 513, 521
BssMI GATC 2 cut(s) 499, 525
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 523
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 2 cut(s) 293, 555
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 403
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 502, 528
BstMAI GTCTC 2 cut(s) 311, 398
BstMBI GATC 2 cut(s) 499, 525
BstMWI GCNNNNNNNGC 3 cut(s) 11, 173, 337
BstNI CCWGG 1 cut(s) 523
BstPAI GACNNNNGTC 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 511, 512, 521
BsuRI GGCC 2 cut(s) 5, 141
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 309
CciI TCATGA 1 cut(s) 528
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 461, 505
Cfr9I CCCGGG 1 cut(s) 512
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 241, 529
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 501, 527
DpnII GATC 2 cut(s) 499, 525
EaeI YGGCCR 2 cut(s) 3, 139
Eam1104I CTCTTC 2 cut(s) 293, 555
EarI CTCTTC 2 cut(s) 293, 555
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 461, 505
Eco57I CTGAAG 1 cut(s) 536
Eco72I CACGTG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 512
EcoNI CCTNNNNNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 244, 532
FaiI YATR 6 cut(s) 23, 108, 242, 338, 530, 542
FaqI GGGAC 2 cut(s) 382, 447
FatI CATG 2 cut(s) 240, 528
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 6, 177
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 2 cut(s) 6, 177
FspBI CTAG 2 cut(s) 372, 573
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 6, 177
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 5, 141
HapII CCGG 3 cut(s) 138, 459, 513
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 244, 532
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 225, 273
HpaII CCGG 3 cut(s) 138, 459, 513
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 131, 352
Hpy188I TCNGA 2 cut(s) 208, 555
Hpy188III TCNNGA 2 cut(s) 446, 529
Hpy8I GTNNAC 2 cut(s) 131, 352
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 5 cut(s) 121, 340, 443, 490, 518
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 49, 490
HpyCH4V TGCA 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 173, 337
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 2 cut(s) 49, 490
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 244, 532
HspAI GCGC 1 cut(s) 179
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 499, 525
LguI GCTCTTC 2 cut(s) 293, 555
LmnI GCTCC 2 cut(s) 317, 517
MaeI CTAG 2 cut(s) 372, 573
MaeII ACGT 2 cut(s) 49, 490
MalI GATC 2 cut(s) 501, 527
MboI GATC 2 cut(s) 499, 525
MboII GAAGA 3 cut(s) 230, 280, 542
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 2 cut(s) 245, 390
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 185, 231
MnlI CCTC 5 cut(s) 95, 134, 214, 403, 453
MspI CCGG 3 cut(s) 138, 459, 513
MspR9I CCNGG 3 cut(s) 513, 514, 523
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 523
MwoI GCNNNNNNNGC 3 cut(s) 11, 173, 337
NciI CCSGG 2 cut(s) 513, 514
NdeII GATC 2 cut(s) 499, 525
NlaIII CATG 2 cut(s) 244, 532
NlaIV GGNNCC 4 cut(s) 238, 457, 463, 519
PagI TCATGA 1 cut(s) 528
PaqCI CACCTGC 1 cut(s) 353
PciSI GCTCTTC 2 cut(s) 293, 555
PfeI GAWTC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 2 cut(s) 7, 178
PleI GAGTC 1 cut(s) 233
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 521
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 521
PspN4I GGNNCC 4 cut(s) 238, 457, 463, 519
PspPI GGNCC 2 cut(s) 461, 505
PspPPI RGGWCCY 1 cut(s) 505
PstNI CAGNNNCTG 1 cut(s) 309
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SapI GCTCTTC 2 cut(s) 293, 555
SatI GCNGC 2 cut(s) 6, 177
Sau3AI GATC 2 cut(s) 499, 525
Sau96I GGNCC 2 cut(s) 461, 505
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 513, 514, 523
SduI GDGCHC 1 cut(s) 522
SinI GGWCC 2 cut(s) 461, 505
SmaI CCCGGG 1 cut(s) 514
Sse9I AATT 2 cut(s) 245, 390
SsiI CCGC 5 cut(s) 6, 65, 167, 176, 329
SspMI CTAG 2 cut(s) 372, 573
StyD4I CCNGG 3 cut(s) 511, 512, 521
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 52, 493
TaqI TCGA 1 cut(s) 472
TasI AATT 2 cut(s) 245, 390
TauI GCSGC 2 cut(s) 8, 179
TfiI GAWTC 1 cut(s) 273
TscAI CASTG 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 38, 257, 373
TspMI CCCGGG 1 cut(s) 512
TspRI CASTG 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 452
VpaK11BI GGWCC 2 cut(s) 461, 505
XagI CCTNNNNNAGG 1 cut(s) 447
XmaI CCCGGG 1 cut(s) 512
XspI CTAG 2 cut(s) 372, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.