MD14G1029800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0013540
Physical Location & Seq
Reverse (-)
2586034 .. 2586437
404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1029800.v1.1.491

Sequence Viewer

Length: 363 bp
ATGGCCATTTCTGTCGCTGTGGCGGGAGGAGTTATGAGCTCACTCCGCCACCTCCACTTCCCACTTGTCAATTCCCACGTCTCACTCTCCCCTCCTCCTTCGGTGGCTGCTTCCTGTCCGCTAGTATTCACCAACTCCACTAGCTACGGCTTCTTTTCTAAGCTTAATTTGCACTCCGGCCGTCACTACCGCAACCAAAATCAAACGCCGGTGGCCAAGGCTTCGTCTCAGGAAAAGGACAGCCTTATTCCTTCCGACGACGCCGAAGACGGCGTCTTGCTCGGGACCATGAAATTGCCCTCGGATACCGATCTTCCCAGATTCCAAATCTTACTATTCCAGGTAACTCTATTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.03

Weight (kDa)

6.96

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7148 PF23650 89 - 115 2e-07 Domain of unknown function (DUF7148)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 23, 46, 119, 190
AcoI YGGCCR 3 cut(s) 3, 178, 213
AcyI GRCGYC 2 cut(s) 261, 273
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 3 cut(s) 39, 144, 163
AluI AGCT 3 cut(s) 39, 144, 163
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 85, 231
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 3 cut(s) 3, 178, 213
ApeKI GCWGC 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 285
BalI TGGCCA 2 cut(s) 5, 215
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 94
BceAI ACGGC 3 cut(s) 163, 165, 286
BciT130I CCWGG 1 cut(s) 341
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 85, 231
BfaI CTAG 2 cut(s) 122, 141
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 261, 273
BsaJI CCNNGG 2 cut(s) 216, 300
Bse118I RCCGGY 1 cut(s) 208
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 216, 300
BseJI GATNNNNATC 1 cut(s) 309
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 2 cut(s) 42, 84
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 5, 180, 215
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 177, 209
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 85, 231
BsmBI CGTCTC 2 cut(s) 85, 231
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 3 cut(s) 5, 180, 215
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 4 cut(s) 23, 46, 119, 190
BspANI GGCC 3 cut(s) 5, 180, 215
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 216, 300
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 2 cut(s) 261, 273
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 341
BstACI GRCGYC 2 cut(s) 261, 273
BstDEI CTNAG 2 cut(s) 159, 228
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 85, 231
BstMBI GATC 1 cut(s) 310
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 45, 169
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 178
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 3 cut(s) 5, 180, 215
BtrI CACGTC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 2 cut(s) 262, 269
CviAII CATG 1 cut(s) 289
DdeI CTNAG 2 cut(s) 159, 228
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 3 cut(s) 3, 178, 213
EagI CGGCCG 1 cut(s) 178
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 285
Eco52I CGGCCG 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 2 cut(s) 85, 231
FaeI CATG 1 cut(s) 292
FaiI YATR 2 cut(s) 35, 290
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 122, 141
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 3 cut(s) 5, 180, 215
HapII CCGG 2 cut(s) 177, 209
HgaI GACGC 2 cut(s) 262, 269
Hin1I GRCGYC 2 cut(s) 261, 273
Hin1II CATG 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 321
HpaII CCGG 2 cut(s) 177, 209
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 256, 304
Hpy188III TCNNGA 2 cut(s) 230, 283
Hpy99I CGWCG 2 cut(s) 260, 263
HpyAV CCTTC 2 cut(s) 108, 261
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 169
HpyF3I CTNAG 2 cut(s) 159, 228
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 2 cut(s) 261, 273
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 127, 190, 215, 222, 326, 331, 353
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 2 cut(s) 122, 141
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 182, 343
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 2 cut(s) 278, 305
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 2 cut(s) 5, 215
MluCI AATT 4 cut(s) 70, 166, 293, 355
MluNI TGGCCA 2 cut(s) 5, 215
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 5 cut(s) 20, 62, 102, 105, 310
Mox20I TGGCCA 2 cut(s) 5, 215
MscI TGGCCA 2 cut(s) 5, 215
MseI TTAA 3 cut(s) 165, 354, 361
Msp20I TGGCCA 2 cut(s) 5, 215
MspI CCGG 2 cut(s) 177, 209
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 45, 169
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 321
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 285
PsyI GACNNNGTC 1 cut(s) 272
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 165, 354, 361
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 41, 54, 81, 146, 165, 345
SgrAI CRCCGGYG 1 cut(s) 208
SinI GGWCC 1 cut(s) 285
Sse9I AATT 4 cut(s) 70, 166, 293, 355
SsiI CCGC 4 cut(s) 23, 46, 119, 190
SspMI CTAG 2 cut(s) 122, 141
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 81
TasI AATT 4 cut(s) 70, 166, 293, 355
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 3 cut(s) 165, 354, 361
Tru9I TTAA 3 cut(s) 165, 354, 361
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 305
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 285
XspI CTAG 2 cut(s) 122, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.