Prupe.7G102300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013540
Physical Location & Seq
Forward (+)
13208106 .. 13209916
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G102300.1

Sequence Viewer

Length: 600 bp
ATGGCCAATGCTGTGACTATGGGAGCGAGGTCACTCCCTTCCCACTCCGCACGTGTCAATTCCCACGTGCCATTCTCTCCCCCTCTCTCACTGGCAGCTTCCACCACCACCAGCAGCCACGGCTTCTTCCTCAAGCTTAATTTACACTCCGGCCACTGCCACCGCCCAAATCAAACGACACCGGCCAGGGCGTCGTATGAGGAAAGAAACAGCCTCGTCCCTTCCGACGACGCTGAAGATGGCGTCTTGCTTGGGACCATGAAATTGCCCTCGGATACCGACGTTCCCAGATTCCAGATCTTGCTCTTCCAGTGGGCTAATAGTCTCGCCCAAGGAGCTAACTTGCCTCTCCCTTCGCCTTTAAAGGTGGACAAAATTGCAGGTGGGACTAGATTGGGTTTTATTACAATTGGGGACGGGGAGACTGAGGTCCTTGTGTACATAGATTGCTTGGTTTTTCCAGCAGACGCTGATTCTGGGCCGATTTTCCGAGCTGTGAGAAATGGACGCTTGAAGGATAAGACGCCTCCTGGTGAGCCAAGAATCATGAGAAGTCTTATGCAGGCTCTTCAGAAGTCGGTTGAAATCGCTAGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.45

Weight (kDa)

8.66

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 371
AciI CCGC 2 cut(s) 48, 163
AcoI YGGCCR 3 cut(s) 3, 151, 183
AcuI CTGAAG 2 cut(s) 255, 554
AcvI CACGTG 2 cut(s) 53, 67
AcyI GRCGYC 3 cut(s) 191, 243, 524
AfaI GTAC 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 2 cut(s) 514, 584
AjnI CCWGG 2 cut(s) 185, 529
AluBI AGCT 4 cut(s) 98, 136, 338, 494
AluI AGCT 4 cut(s) 98, 136, 338, 494
Alw26I GTCTC 2 cut(s) 329, 416
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 4 cut(s) 3, 151, 183, 479
ApeKI GCWGC 2 cut(s) 95, 114
AspS9I GGNCC 3 cut(s) 255, 430, 479
AsuHPI GGTGA 1 cut(s) 545
AvaII GGWCC 2 cut(s) 255, 430
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 2 cut(s) 53, 67
BbvI GCAGC 2 cut(s) 107, 126
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 187, 531
BciVI GTATCC 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 329, 416
BfaI CTAG 2 cut(s) 390, 591
BfuAI ACCTGC 1 cut(s) 371
BfuI GTATCC 1 cut(s) 268
BglII AGATCT 1 cut(s) 297
BisI GCNGC 2 cut(s) 96, 115
BlsI GCNGC 2 cut(s) 97, 116
Bme1390I CCNGG 2 cut(s) 187, 531
Bme18I GGWCC 2 cut(s) 255, 430
BmgT120I GGNCC 3 cut(s) 255, 430, 479
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 187, 531
BoxI GACNNNNGTC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 2 cut(s) 53, 67
BsaHI GRCGYC 3 cut(s) 191, 243, 524
BsaJI CCNNGG 4 cut(s) 118, 186, 270, 331
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 96, 310
BseBI CCWGG 2 cut(s) 187, 531
BseDI CCNNGG 4 cut(s) 118, 186, 270, 331
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 96, 310
BseXI GCAGC 2 cut(s) 107, 126
BshFI GGCC 4 cut(s) 5, 153, 185, 481
BsiSI CCGG 2 cut(s) 150, 182
BslFI GGGAC 4 cut(s) 203, 268, 400, 428
BsmAI GTCTC 2 cut(s) 329, 416
BsmFI GGGAC 4 cut(s) 203, 268, 400, 428
BsnI GGCC 4 cut(s) 5, 153, 185, 481
Bsp1407I TGTACA 1 cut(s) 438
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 2 cut(s) 48, 163
BspANI GGCC 4 cut(s) 5, 153, 185, 481
BspCNI CTCAG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 371
BspQI GCTCTTC 2 cut(s) 311, 573
BsrFI RCCGGY 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 2 cut(s) 96, 310
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 4 cut(s) 118, 186, 270, 331
BssMI GATC 1 cut(s) 297
BssNI GRCGYC 3 cut(s) 191, 243, 524
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 187, 531
Bst6I CTCTTC 2 cut(s) 311, 573
BstACI GRCGYC 3 cut(s) 191, 243, 524
BstAUI TGTACA 1 cut(s) 438
BstBAI YACGTR 2 cut(s) 53, 67
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 118
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 329, 416
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 120, 335
BstNI CCWGG 2 cut(s) 187, 531
BstPAI GACNNNNGTC 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 185, 529
BstV1I GCAGC 2 cut(s) 107, 126
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 4 cut(s) 5, 153, 185, 481
BtgI CCRYGG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 89, 154, 317
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 255, 430, 479
CseI GACGC 6 cut(s) 180, 232, 239, 476, 516, 532
Csp6I GTAC 1 cut(s) 439
CviAII CATG 2 cut(s) 259, 547
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 426
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 3 cut(s) 3, 151, 183
Eam1104I CTCTTC 2 cut(s) 311, 573
EarI CTCTTC 2 cut(s) 311, 573
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 255, 430
Eco57I CTGAAG 2 cut(s) 255, 554
Eco72I CACGTG 2 cut(s) 53, 67
EcoO109I RGGNCCY 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 185, 529
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 262, 550
FaiI YATR 6 cut(s) 20, 198, 260, 443, 548, 560
FaqI GGGAC 4 cut(s) 203, 268, 400, 428
FatI CATG 2 cut(s) 258, 546
Fnu4HI GCNGC 2 cut(s) 96, 115
Fsp4HI GCNGC 2 cut(s) 96, 115
FspBI CTAG 2 cut(s) 390, 591
GluI GCNGC 2 cut(s) 96, 115
HaeIII GGCC 4 cut(s) 5, 153, 185, 481
HapII CCGG 2 cut(s) 150, 182
HgaI GACGC 6 cut(s) 180, 232, 239, 476, 516, 532
Hin1I GRCGYC 3 cut(s) 191, 243, 524
Hin1II CATG 2 cut(s) 262, 550
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 3 cut(s) 291, 473, 543
HpaII CCGG 2 cut(s) 150, 182
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 370, 439
Hpy188I TCNGA 4 cut(s) 226, 274, 491, 573
Hpy188III TCNNGA 2 cut(s) 295, 547
Hpy8I GTNNAC 2 cut(s) 370, 439
Hpy99I CGWCG 4 cut(s) 196, 230, 233, 284
HpyAV CCTTC 4 cut(s) 48, 231, 363, 508
HpyCH4IV ACGT 3 cut(s) 52, 66, 282
HpyCH4V TGCA 2 cut(s) 380, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 335
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 3 cut(s) 52, 66, 282
Hsp92I GRCGYC 3 cut(s) 191, 243, 524
Hsp92II CATG 2 cut(s) 262, 550
Kzo9I GATC 1 cut(s) 297
LguI GCTCTTC 2 cut(s) 311, 573
LmnI GCTCC 2 cut(s) 23, 335
Lsp1109I GCAGC 2 cut(s) 107, 126
MaeI CTAG 2 cut(s) 390, 591
MaeII ACGT 3 cut(s) 52, 66, 282
MaeIII GTNAC 2 cut(s) 13, 30
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 4 cut(s) 118, 248, 298, 560
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 297
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 58, 139, 263, 375, 408
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 9 cut(s) 21, 93, 140, 193, 224, 280, 357, 421, 537
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 138, 362
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 150, 182
MspR9I CCNGG 2 cut(s) 187, 531
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 2 cut(s) 187, 531
MwoI GCNNNNNNNGC 2 cut(s) 120, 335
NdeII GATC 1 cut(s) 297
NlaIII CATG 2 cut(s) 262, 550
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 13, 30
PagI TCATGA 1 cut(s) 546
PaqCI CACCTGC 1 cut(s) 371
PciSI GCTCTTC 2 cut(s) 311, 573
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 3 cut(s) 291, 473, 543
PkrI GCNGC 2 cut(s) 97, 116
PmaCI CACGTG 2 cut(s) 53, 67
PmlI CACGTG 2 cut(s) 53, 67
Ppu21I YACGTR 2 cut(s) 53, 67
PpuMI RGGWCCY 1 cut(s) 430
PshAI GACNNNNGTC 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 185, 529
PspCI CACGTG 2 cut(s) 53, 67
PspGI CCWGG 2 cut(s) 185, 529
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 255, 430, 479
PspPPI RGGWCCY 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SapI GCTCTTC 2 cut(s) 311, 573
SaqAI TTAA 2 cut(s) 138, 362
SatI GCNGC 2 cut(s) 96, 115
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 3 cut(s) 255, 430, 479
ScrFI CCNGG 2 cut(s) 187, 531
SinI GGWCC 2 cut(s) 255, 430
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 5 cut(s) 58, 139, 263, 375, 408
SsiI CCGC 2 cut(s) 48, 163
SspMI CTAG 2 cut(s) 390, 591
StyD4I CCNGG 2 cut(s) 185, 529
StyI CCWWGG 1 cut(s) 331
TaiI ACGT 3 cut(s) 55, 69, 285
TasI AATT 5 cut(s) 58, 139, 263, 375, 408
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 3 cut(s) 291, 473, 543
Tru1I TTAA 2 cut(s) 138, 362
Tru9I TTAA 2 cut(s) 138, 362
TscAI CASTG 3 cut(s) 96, 161, 317
TseFI GTSAC 2 cut(s) 13, 30
TseI GCWGC 2 cut(s) 95, 114
Tsp45I GTSAC 2 cut(s) 13, 30
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 3 cut(s) 96, 161, 317
VpaK11BI GGWCC 2 cut(s) 255, 430
XspI CTAG 2 cut(s) 390, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.