Rmu_sc0001353.1_g000048

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001353.1
OG0013540
Physical Location & Seq
Reverse (-)
201725 .. 202815
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001353.1_g000048.1.cds

Sequence Viewer

Length: 603 bp
atggccgccactgctgtgaatatgaagctactccacttccactccccacgtgccaatccccacccaccatcgttttccccacttctcaccaacaccactaccaccaccaccagcagcagccatgccttccctaacaacctcagtttacattccggccactcccaccacccaaatccaacggcggtggtcaaggcggcgctggataaggacagccttgtgccctccgacgacgccgaagatggagtcttgcttggtaccatgaaattgcctgatgatactgactttcccagattccaaatcttgctcttccagtgggctaacagtctctgccaaggagcaaatctaccgcttgatatgcctttgaaggttgacaaaatagcaggtgggactagattgggtttcattacaattggggatggggagacggaggtcattggctacattgattgcttggttttccctccagaaggtggttccggtcccatttttcgagctgttagaaatggacgtttgaaggatcgggtccttcccggggagcccaggatcatgagaaatcttatgcaggctcttcagaagtcggttcaaatcgctagagtgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.7

Weight (kDa)

7.1

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 371
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 470
AciI CCGC 4 cut(s) 6, 182, 194, 347
AclWI GGATC 2 cut(s) 525, 551
AcoI YGGCCR 2 cut(s) 3, 154
AcuI CTGAAG 1 cut(s) 554
AcvI CACGTG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 3 cut(s) 467, 470, 532
AgsI TTSAA 3 cut(s) 364, 514, 584
AjnI CCWGG 1 cut(s) 539
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 28, 494
AluI AGCT 2 cut(s) 28, 494
Alw26I GTCTC 2 cut(s) 329, 416
AlwI GGATC 2 cut(s) 525, 551
AlwNI CAGNNNCTG 1 cut(s) 327
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 3, 154
ApeKI GCWGC 2 cut(s) 114, 117
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
Asp718I GGTACC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 479, 523
AsuC2I CCSGG 2 cut(s) 531, 532
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 2 cut(s) 479, 523
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 540
BbrPI CACGTG 1 cut(s) 50
BbvI GCAGC 2 cut(s) 126, 129
BccI CCATC 3 cut(s) 76, 233, 410
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 541
BcnI CCSGG 2 cut(s) 531, 532
BcoDI GTCTC 2 cut(s) 329, 416
BfaI CTAG 2 cut(s) 390, 591
BfoI RGCGCY 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 371
BisI GCNGC 4 cut(s) 6, 115, 118, 195
BlsI GCNGC 4 cut(s) 7, 116, 119, 196
Bme1390I CCNGG 3 cut(s) 531, 532, 541
Bme18I GGWCC 2 cut(s) 479, 523
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 479, 523
BmiI GGNNCC 5 cut(s) 256, 475, 481, 524, 537
BmrFI CCNGG 3 cut(s) 531, 532, 541
BoxI GACNNNNGTC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 447
BpuMI CCSGG 2 cut(s) 531, 532
BsaAI YACGTR 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 4 cut(s) 331, 530, 531, 539
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 470, 532
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 541
BseDI CCNNGG 4 cut(s) 331, 530, 531, 539
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 3 cut(s) 467, 470, 532
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 126, 129
BshFI GGCC 2 cut(s) 5, 156
BshNI GGYRCC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 3 cut(s) 153, 477, 531
BslFI GGGAC 2 cut(s) 400, 465
BslI CCNNNNNNNGG 3 cut(s) 467, 470, 532
BsmAI GTCTC 2 cut(s) 329, 416
BsmBI CGTCTC 1 cut(s) 416
BsmFI GGGAC 2 cut(s) 400, 465
BsnI GGCC 2 cut(s) 5, 156
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 222, 540
Bsp143I GATC 2 cut(s) 517, 543
BspACI CCGC 4 cut(s) 6, 182, 194, 347
BspANI GGCC 2 cut(s) 5, 156
BspCNI CTCAG 1 cut(s) 153
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 5 cut(s) 256, 475, 481, 524, 537
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 2 cut(s) 525, 551
BspQI GCTCTTC 2 cut(s) 311, 573
BspT107I GGYRCC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 331, 530, 531, 539
BssMI GATC 2 cut(s) 517, 543
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 311, 573
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 520, 546
BstMAI GTCTC 2 cut(s) 329, 416
BstMBI GATC 2 cut(s) 517, 543
BstMWI GCNNNNNNNGC 2 cut(s) 11, 355
BstNI CCWGG 1 cut(s) 541
BstPAI GACNNNNGTC 1 cut(s) 428
BstSCI CCNGG 3 cut(s) 529, 530, 539
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 126, 129
BsuRI GGCC 2 cut(s) 5, 156
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 317
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 327
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 479, 523
Cfr9I CCCGGG 1 cut(s) 530
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 255
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 3 cut(s) 122, 259, 547
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 519, 545
DpnII GATC 2 cut(s) 517, 543
EaeI YGGCCR 2 cut(s) 3, 154
Eam1104I CTCTTC 2 cut(s) 311, 573
EarI CTCTTC 2 cut(s) 311, 573
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 540
Eco47I GGWCC 2 cut(s) 479, 523
Eco57I CTGAAG 1 cut(s) 554
Eco72I CACGTG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 530
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 3 cut(s) 125, 262, 550
FaiI YATR 6 cut(s) 23, 123, 260, 356, 548, 560
FaqI GGGAC 2 cut(s) 400, 465
FatI CATG 3 cut(s) 121, 258, 546
Fnu4HI GCNGC 4 cut(s) 6, 115, 118, 195
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 4 cut(s) 6, 115, 118, 195
FspBI CTAG 2 cut(s) 390, 591
GlaI GCGC 1 cut(s) 198
GluI GCNGC 4 cut(s) 6, 115, 118, 195
GsuI CTGGAG 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 2 cut(s) 5, 156
HapII CCGG 3 cut(s) 153, 477, 531
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 125, 262, 550
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 2 cut(s) 243, 291
HpaII CCGG 3 cut(s) 153, 477, 531
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 146, 370
Hpy188I TCNGA 2 cut(s) 226, 573
Hpy188III TCNNGA 2 cut(s) 464, 547
Hpy8I GTNNAC 2 cut(s) 146, 370
Hpy99I CGWCG 2 cut(s) 230, 233
HpyAV CCTTC 5 cut(s) 136, 358, 461, 508, 536
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 49, 508
HpyCH4V TGCA 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 355
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 49, 508
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 125, 262, 550
HspAI GCGC 1 cut(s) 197
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 517, 543
LguI GCTCTTC 2 cut(s) 311, 573
LmnI GCTCC 2 cut(s) 335, 535
Lsp1109I GCAGC 2 cut(s) 126, 129
MaeI CTAG 2 cut(s) 390, 591
MaeII ACGT 2 cut(s) 49, 508
MalI GATC 2 cut(s) 519, 545
MboI GATC 2 cut(s) 517, 543
MboII GAAGA 3 cut(s) 248, 298, 560
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 222, 540
MluCI AATT 2 cut(s) 263, 408
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 200, 249
MnlI CCTC 4 cut(s) 149, 232, 421, 471
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 3 cut(s) 153, 477, 531
MspR9I CCNGG 3 cut(s) 531, 532, 541
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 11, 355
NciI CCSGG 2 cut(s) 531, 532
NdeII GATC 2 cut(s) 517, 543
NlaIII CATG 3 cut(s) 125, 262, 550
NlaIV GGNNCC 5 cut(s) 256, 475, 481, 524, 537
OliI CACNNNNGTG 1 cut(s) 14
PagI TCATGA 1 cut(s) 546
PaqCI CACCTGC 1 cut(s) 371
PciSI GCTCTTC 2 cut(s) 311, 573
PfeI GAWTC 1 cut(s) 291
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 4 cut(s) 7, 116, 119, 196
PleI GAGTC 1 cut(s) 251
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 539
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 5 cut(s) 256, 475, 481, 524, 537
PspPI GGNCC 2 cut(s) 479, 523
PspPPI RGGWCCY 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 14
SapI GCTCTTC 2 cut(s) 311, 573
SatI GCNGC 4 cut(s) 6, 115, 118, 195
Sau3AI GATC 2 cut(s) 517, 543
Sau96I GGNCC 2 cut(s) 479, 523
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 3 cut(s) 531, 532, 541
SduI GDGCHC 2 cut(s) 222, 540
SetI ASST 9 cut(s) 30, 52, 141, 369, 385, 432, 472, 496, 511
SinI GGWCC 2 cut(s) 479, 523
SmaI CCCGGG 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 263, 408
SsiI CCGC 4 cut(s) 6, 182, 194, 347
SspMI CTAG 2 cut(s) 390, 591
StyD4I CCNGG 3 cut(s) 529, 530, 539
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 2 cut(s) 52, 511
TaqI TCGA 1 cut(s) 490
TasI AATT 2 cut(s) 263, 408
TauI GCSGC 2 cut(s) 8, 197
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 2 cut(s) 16, 317
TseI GCWGC 2 cut(s) 114, 117
TspDTI ATGAA 3 cut(s) 38, 275, 391
TspGWI ACGGA 1 cut(s) 440
TspMI CCCGGG 1 cut(s) 530
TspRI CASTG 2 cut(s) 16, 317
Van91I CCANNNNNTGG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 479, 523
XagI CCTNNNNNAGG 1 cut(s) 465
XmaI CCCGGG 1 cut(s) 530
XspI CTAG 2 cut(s) 390, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.