FvH4_6g19360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013540
Physical Location & Seq
Reverse (-)
12897695 .. 12899134
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19360.t1

Sequence Viewer

Length: 588 bp
ATGGCCGCCACTGCTGTGAATATGAAGCTACATCCTCTTCACTTCCACTCCCCACGAGCCAATCCCCACGCGCCATCGTTCTCTCCACTTCTCACCAACACCACCACCAGCCATGCCTTCCCTACCCTCAGTTTACAATATTACGGTCTCTCTCACCCAAATCCAAAGGCGGTGGCCAGAGCCGCGCTGGATAAGGACAGCCTCGTGCCCTCCGACGAAGCCGAAGACGGAGTCTTGCTTGGTACCATGAAGTTGCCCGACAATACCGACTTCCCCAGATTCCAAATCTTACTCTTCCAGTGGGCTAACAGTCTCTGCCAAGGAGCAAATCTACCGCTTGATATGCCTTTGAAGGTAGACAAAATAGCAGGCGGGACTAGATTGGGATTCATAACAATTGGGGATGGGGAGACAGAGGTCATTGGGTACATAGATTGCTTGGTTTTCCCACCTGAAGGTGATGCCGGTCCGATTTTCCGAGCAGTTAGAAACGGACGTTTGAAGGATCGGGTGCTTCCCGGTGAACCCAGAATCATGAGAAATCTTATGCAGGCTCTCCAGAGGTCGGTTCAAATCGCTAGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.32

Weight (kDa)

7.86

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7148 PF23650 75 - 194 1.7e-56 Domain of unknown function (DUF7148)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 357
AccII CGCG 2 cut(s) 71, 185
AciI CCGC 5 cut(s) 6, 170, 183, 335, 372
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 2 cut(s) 3, 174
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 2 cut(s) 244, 428
AfiI CCNNNNNNNGG 2 cut(s) 455, 565
AgsI TTSAA 3 cut(s) 352, 502, 572
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 3 cut(s) 152, 317, 404
AlwI GGATC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 315
AoxI GGCC 2 cut(s) 3, 174
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp718I GGTACC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 73, 187
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 4 cut(s) 85, 146, 470, 533
AvaII GGWCC 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 210
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 242
BauI CACGAG 2 cut(s) 54, 203
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 2 cut(s) 82, 398
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 3 cut(s) 152, 317, 404
BfaI CTAG 2 cut(s) 378, 579
BisI GCNGC 2 cut(s) 6, 183
BlsI GCNGC 2 cut(s) 7, 184
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 1 cut(s) 451
BoxI GACNNNNGTC 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 565
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 31, 409
BseLI CCNNNNNNNGG 2 cut(s) 455, 565
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 210
Bsh1236I CGCG 2 cut(s) 71, 185
BshFI GGCC 2 cut(s) 5, 176
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 2 cut(s) 465, 519
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 455, 565
BsmAI GTCTC 3 cut(s) 152, 317, 404
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 2 cut(s) 5, 176
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 505
BspACI CCGC 5 cut(s) 6, 170, 183, 335, 372
BspANI GGCC 2 cut(s) 5, 176
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 2 cut(s) 71, 185
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 1 cut(s) 505
BssSI CACGAG 2 cut(s) 54, 203
BssT1I CCWWGG 1 cut(s) 319
Bst2BI CACGAG 2 cut(s) 54, 203
Bst4CI ACNGT 2 cut(s) 146, 311
Bst6I CTCTTC 2 cut(s) 42, 299
BstC8I GCNNGC 2 cut(s) 370, 552
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 31, 409
BstFNI CGCG 2 cut(s) 71, 185
BstHHI GCGC 2 cut(s) 73, 187
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 3 cut(s) 152, 317, 404
BstMBI GATC 1 cut(s) 505
BstMWI GCNNNNNNNGC 3 cut(s) 11, 182, 343
BstPAI GACNNNNGTC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 210
BstUI CGCG 2 cut(s) 71, 185
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 5, 176
BtsCI GGATG 2 cut(s) 31, 409
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 305
Cac8I GCNNGC 2 cut(s) 370, 552
CaiI CAGNNNCTG 1 cut(s) 315
CciI TCATGA 1 cut(s) 534
CfoI GCGC 2 cut(s) 73, 187
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 467
CpoI CGGWCCG 1 cut(s) 467
Csp6I GTAC 2 cut(s) 243, 427
CspCI CAANNNNNGTGG 2 cut(s) 153, 188
CspI CGGWCCG 1 cut(s) 467
CviAII CATG 3 cut(s) 113, 247, 535
CviQI GTAC 2 cut(s) 243, 427
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 3, 174
Eam1104I CTCTTC 2 cut(s) 42, 299
EarI CTCTTC 2 cut(s) 42, 299
Eco130I CCWWGG 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 3 cut(s) 116, 250, 538
FaiI YATR 8 cut(s) 23, 114, 248, 344, 392, 431, 536, 548
FaqI GGGAC 1 cut(s) 388
FatI CATG 3 cut(s) 112, 246, 534
FauI CCCGC 1 cut(s) 365
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 6, 183
FokI GGATG 2 cut(s) 18, 416
Fsp4HI GCNGC 2 cut(s) 6, 183
FspBI CTAG 2 cut(s) 378, 579
GlaI GCGC 2 cut(s) 72, 186
GluI GCNGC 2 cut(s) 6, 183
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 2 cut(s) 5, 176
HapII CCGG 2 cut(s) 465, 519
HhaI GCGC 2 cut(s) 73, 187
Hin1II CATG 3 cut(s) 116, 250, 538
Hin6I GCGC 2 cut(s) 71, 185
HinP1I GCGC 2 cut(s) 71, 185
HinfI GANTC 4 cut(s) 231, 279, 387, 531
HpaII CCGG 2 cut(s) 465, 519
HphI GGTGA 4 cut(s) 85, 146, 470, 533
Hpy166II GTNNAC 3 cut(s) 134, 358, 524
Hpy188I TCNGA 3 cut(s) 214, 471, 479
Hpy188III TCNNGA 2 cut(s) 535, 559
Hpy8I GTNNAC 3 cut(s) 134, 358, 524
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 127, 346, 449, 496
HpyCH4III ACNGT 2 cut(s) 146, 311
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 182, 343
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 3 cut(s) 116, 250, 538
HspAI GCGC 2 cut(s) 71, 185
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 1 cut(s) 323
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 378, 579
MaeII ACGT 1 cut(s) 496
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 3 cut(s) 29, 236, 286
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 6 cut(s) 45, 137, 212, 220, 409, 555
Mox20I TGGCCA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 176
MspI CCGG 2 cut(s) 465, 519
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 396
MvnI CGCG 2 cut(s) 71, 185
MwoI GCNNNNNNNGC 3 cut(s) 11, 182, 343
NciI CCSGG 1 cut(s) 519
NdeII GATC 1 cut(s) 505
NlaIII CATG 3 cut(s) 116, 250, 538
NlaIV GGNNCC 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 14
PagI TCATGA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 3 cut(s) 279, 387, 531
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 7, 184
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 244, 428
RsaNI GTAC 2 cut(s) 243, 427
RseI CAYNNNNRTG 1 cut(s) 14
Rsr2I CGGWCCG 1 cut(s) 467
RsrII CGGWCCG 1 cut(s) 467
SatI GCNGC 2 cut(s) 6, 183
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 210
SetI ASST 7 cut(s) 30, 357, 420, 454, 460, 499, 566
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 1 cut(s) 396
SsiI CCGC 5 cut(s) 6, 170, 183, 335, 372
SspI AATATT 1 cut(s) 140
SspMI CTAG 2 cut(s) 378, 579
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 146, 311
TaiI ACGT 1 cut(s) 499
TasI AATT 1 cut(s) 396
TauI GCSGC 2 cut(s) 8, 185
TfiI GAWTC 3 cut(s) 279, 387, 531
TscAI CASTG 2 cut(s) 16, 305
TspDTI ATGAA 3 cut(s) 38, 263, 379
TspGWI ACGGA 2 cut(s) 243, 507
TspRI CASTG 2 cut(s) 16, 305
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 2 cut(s) 378, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.