AT2G36355

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009830
Physical Location & Seq
Forward (+)
15242323 .. 15243492
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36355.2

Sequence Viewer

Length: 468 bp
ATGAACAGTACCAACTCAGGAGCTACAACTTCGACTAAAAGCAAGATACCAATGGAGGAGAACCAAGAAGAAGAGATATGGCGAAACTTTCAAGCCCGAGAAGAAGAGATCGAGAGAAAGAAGATGGCGGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAGGAAGCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGGAAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATCGAGAAATCAAATCTTTGTCTCAGAGCTGCCAGAAGAAGGAGAGGGAATACAAAGAGATACATGAGGCTTTCGACGAAAAGAACAAAGAGAAAGCACACCTTGTTTCAATCTTAATGGAGCTACTAGCTGAAAGTGAAAGAGTAAGGGTGAAGAAGCTGGAAGAGATCAACAAGACTATTGGGTCCTTGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

155

Amino Acids

18.1

Weight (kDa)

7.79

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 23 - 110 1.4e-40 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 215
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 3 cut(s) 92, 146, 381
AluBI AGCT 6 cut(s) 23, 183, 300, 394, 401, 430
AluI AGCT 6 cut(s) 23, 183, 300, 394, 401, 430
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 287
BccI CCATC 3 cut(s) 118, 238, 259
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 2 cut(s) 206, 398
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 30, 308
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 96
Bsp143I GATC 4 cut(s) 108, 210, 220, 438
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 29, 307
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 1 cut(s) 215
BssMI GATC 4 cut(s) 108, 210, 220, 438
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 3 cut(s) 66, 99, 429
BstDEI CTNAG 2 cut(s) 16, 294
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 4 cut(s) 111, 213, 223, 441
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 4 cut(s) 108, 210, 220, 438
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 9
CviAII CATG 2 cut(s) 214, 335
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 16, 294
DpnI GATC 4 cut(s) 110, 212, 222, 440
DpnII GATC 4 cut(s) 108, 210, 220, 438
DrdI GACNNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 454
Eam1104I CTCTTC 3 cut(s) 66, 99, 429
EarI CTCTTC 3 cut(s) 66, 99, 429
Eco47I GGWCC 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 456
FaeI CATG 2 cut(s) 217, 338
FaiI YATR 3 cut(s) 79, 215, 336
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 2 cut(s) 213, 334
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 206, 398
GluI GCNGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 217, 338
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 1 cut(s) 142
HphI GGTGA 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 4 cut(s) 18, 112, 262, 275
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 3 cut(s) 194, 226, 304
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 16, 294
Hsp92II CATG 2 cut(s) 217, 338
Kzo9I GATC 4 cut(s) 108, 210, 220, 438
LmnI GCTCC 2 cut(s) 20, 391
LpnPI CCDG 3 cut(s) 3, 317, 416
Lsp1109I GCAGC 1 cut(s) 287
MaeI CTAG 2 cut(s) 206, 398
MalI GATC 4 cut(s) 110, 212, 222, 440
MboI GATC 4 cut(s) 108, 210, 220, 438
MboII GAAGA 8 cut(s) 80, 83, 113, 116, 133, 319, 436, 446
MflI RGATCY 1 cut(s) 220
MnlI CCTC 5 cut(s) 49, 160, 222, 309, 331
MseI TTAA 2 cut(s) 132, 386
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 4 cut(s) 108, 210, 220, 438
NlaIII CATG 2 cut(s) 217, 338
NlaIV GGNNCC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 302
PpuMI RGGWCCY 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 456
PspPPI RGGWCCY 1 cut(s) 456
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 132, 386
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 4 cut(s) 108, 210, 220, 438
Sau96I GGNCC 1 cut(s) 456
SetI ASST 7 cut(s) 25, 185, 302, 375, 396, 403, 432
SinI GGWCC 1 cut(s) 456
SsiI CCGC 1 cut(s) 128
SspMI CTAG 2 cut(s) 206, 398
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 32, 111, 261, 274, 345
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 132, 386
Tru9I TTAA 2 cut(s) 132, 386
TseI GCWGC 1 cut(s) 300
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 456
XspI CTAG 2 cut(s) 206, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.