RLG00000022899

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009830
Physical Location & Seq
Reverse (-)
14624589 .. 14625630
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022899

Sequence Viewer

Length: 471 bp
ATGAAGAGCCTTGGGGGAAATGGCAGCAGTGGGAGGCTATCAATGGAGGAGAATGAGGATGAAGAGACTTCGAGACTGGCCATATTAACCTTCCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTGAGGGAGAGGGTTGAACTTCAATTAGGTCGTGCGGAGGAAGAAACTAGGCGCTTGGCACAAATTTGGGAAGAGCTTGAAGCAATGGCAGATCCGATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTTAATCGAGAGCTGAAGCCCTTGGGACTCAGCTGCCAGAAGAAGGAAAAAGAATACAAGGAAGTCCTGGAGAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCACAATGATGGAGCTTCTGACTGAAAGTGAGAGGTTCAGGATGCAAAAGCTAGAGGAGCTGAGCAAGAACATAGAACTATCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

157

Amino Acids

18.4

Weight (kDa)

5.29

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 4 - 153 4.3e-73 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 4 cut(s) 149, 155, 212, 349
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 8 cut(s) 98, 208, 283, 303, 345, 397, 433, 442
AluI AGCT 8 cut(s) 98, 208, 283, 303, 345, 397, 433, 442
Alw26I GTCTC 2 cut(s) 59, 67
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 24, 303
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 80
BbvI GCAGC 2 cut(s) 36, 290
BccI CCATC 2 cut(s) 121, 385
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 59, 67
BfaI CTAG 3 cut(s) 99, 180, 434
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 2 cut(s) 25, 304
BlpI GCTNAGC 1 cut(s) 443
BlsI GCNGC 2 cut(s) 26, 305
Bme1390I CCNGG 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 10, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 10, 291
BseGI GGATG 2 cut(s) 64, 429
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 313, 434
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 3 cut(s) 62, 122, 452
BseXI GCAGC 2 cut(s) 36, 290
BshFI GGCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 59, 67
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 443
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 312, 435
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 10, 291
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 10, 291
Bst2UI CCWGG 1 cut(s) 338
Bst6I CTCTTC 3 cut(s) 57, 99, 198
BstDEI CTNAG 2 cut(s) 299, 443
BstF5I GGATG 2 cut(s) 64, 429
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 59, 67
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 36, 290
BstX2I RGATCY 1 cut(s) 223
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 2 cut(s) 64, 429
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 186
CviAII CATG 1 cut(s) 268
DdeI CTNAG 2 cut(s) 299, 443
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 57, 99, 198
EarI CTCTTC 3 cut(s) 57, 99, 198
Eco130I CCWWGG 2 cut(s) 10, 291
Eco57I CTGAAG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 10, 291
ErhI CCWWGG 2 cut(s) 10, 291
FaeI CATG 1 cut(s) 271
FaiI YATR 3 cut(s) 83, 269, 455
FaqI GGGAC 1 cut(s) 309
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 25, 304
FokI GGATG 2 cut(s) 71, 436
Fsp4HI GCNGC 2 cut(s) 25, 304
FspBI CTAG 3 cut(s) 99, 180, 434
GlaI GCGC 1 cut(s) 185
GluI GCNGC 2 cut(s) 25, 304
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 80
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 228, 402
Hpy188III TCNNGA 3 cut(s) 72, 278, 421
HpyAV CCTTC 3 cut(s) 100, 229, 307
HpyCH4V TGCA 2 cut(s) 245, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 2 cut(s) 299, 443
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 394, 439
LpnPI CCDG 5 cut(s) 62, 320, 323, 350, 406
Lsp1109I GCAGC 2 cut(s) 36, 290
LweI GCATC 1 cut(s) 414
MaeI CTAG 3 cut(s) 99, 180, 434
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 9 cut(s) 16, 74, 116, 133, 136, 185, 215, 268, 322
MflI RGATCY 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 2 cut(s) 155, 195
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 1 cut(s) 291
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 2 cut(s) 86, 273
MslI CAYNNNNRTG 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 2 cut(s) 26, 305
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PsuI RGATCY 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 86, 273
SatI GCNGC 2 cut(s) 25, 304
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 338
SfaNI GCATC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 2 cut(s) 155, 195
SsiI CCGC 1 cut(s) 167
SspMI CTAG 3 cut(s) 99, 180, 434
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 10, 291
TaqI TCGA 3 cut(s) 71, 264, 277
TasI AATT 2 cut(s) 155, 195
Tru1I TTAA 2 cut(s) 86, 273
Tru9I TTAA 2 cut(s) 86, 273
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 24, 303
TspDTI ATGAA 3 cut(s) 17, 75, 366
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 195
XspI CTAG 3 cut(s) 99, 180, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.