FvH4_1g24952

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009830
Physical Location & Seq
Forward (+)
16756591 .. 16757669
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24952.t1

Sequence Viewer

Length: 231 bp
ATGTTTTTGGAGCTCGAAGCATTGTCAGATCCCAATAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGAAAAAGAGTACAAGGAAGCCCTGGAGAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCACAATGAAGGAGCTTTTGACTGACAGTGAGAGGTTGAGGATGCAGAAGCTAGAGGAGCTGAGCAAGAACATAGAACTATCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

77

Amino Acids

9.05

Weight (kDa)

5.49

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 4 - 73 1.8e-23 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 23
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 5 cut(s) 13, 105, 157, 193, 202
AluI AGCT 5 cut(s) 13, 105, 157, 193, 202
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 28
Bsp1720I GCTNAGC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 195
BspPI GGATC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 175
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 73
CviJI RGCY 7 cut(s) 13, 95, 105, 131, 157, 193, 202
CviKI_1 RGCY 7 cut(s) 13, 95, 105, 131, 157, 193, 202
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 215
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 15
FspBI CTAG 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 119
Hin1II CATG 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 34, 145
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 50, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 3 cut(s) 10, 154, 199
LpnPI CCDG 2 cut(s) 83, 110
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 73
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 15
MnlI CCTC 3 cut(s) 168, 174, 190
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 15
SetI ASST 6 cut(s) 15, 107, 159, 179, 195, 204
SfaNI GCATC 1 cut(s) 174
SgeI CNNG 9 cut(s) 26, 59, 85, 100, 109, 110, 149, 206, 220
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 15, 69
TatI WGTACW 1 cut(s) 84
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 126, 164
TspRI CASTG 1 cut(s) 175
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.