Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009830

Physical Location & Seq

Genomic Coordinates Reverse (-)

19170423 .. 19172649

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAAGAGCCTTGGGGGAAATGGCAGCAGCGGGAGGCTATCAATGGAGGAGAATGAGGATGAAGAGACTTCGAGACTGGCCATATCAACCTTCCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTGAAAGAGAGGGTTGAACTTCAATTAGGTCGTGCTGAGGAAGAAACTAGGCGCTTGGCACAAATTTGGGAAGAGCTCGAAGCATTGTCAGATCCCAATAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTAAACCGAGAACTGAAGCCTTTGGGACTCGGCTGCCAGAAGAAGGAAAAAGAGTACAAGGAAGCCCTGGAGAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCACAATGATGGAGGTTGAGGATGCAGAAGCTAGAGGAGCTGAGCAAGAACATAGAACTATCACATTGAAACGCCCTGATGCTTCAACGGAATTGGATATCACTACGCCGATCAAGAAGGCTACACCGACATGGAGAAGGCTACGCCGAAGATCTCCGTCAATCTTCTGCTCCGACCTAACCCTAGGCTCACCTAGATCTATCTCACGAAGGCGATGTCAACATACTGAAGGCTATACCGGAGATCTTCGCCGATCTTCTACTCTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

Transcrip_act

Protein Analysis

218

Amino Acids

25.05

Weight (kDa)

8.38

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transcrip_act	PF04949	4 - 133	1.2e-60	Transcriptional activator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36355 AT2G36355 AT2G36355 AT2G36355 AT3G52900
fragaria_vesca	FvH4_1g24952 FvH4_1g27500
malus_domestica	MD02G1248700.v1.1 MD02G1248800.v1.1 MD07G1067500.v1.1
prunus_persica	Prupe.2G084700_v2.0.a1
pyrus_communis	pycom02g21310 pycom07g05160
rosa_chinensis	RchiOBHm_Chr3g0489011
rosa_laevigata	RLG00000022899
rosa_rugosa	Rorug03G0242600 Rorug03G0242700
rosa_samantha	Rh3BG327700 Rh3CG325000 Rh3DG324000
rosa_wichuraiana	Rw3G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	305, 630
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	5 cut(s)	149, 155, 349, 451, 468
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	5 cut(s)	98, 208, 345, 413, 422
AluI	AGCT	5 cut(s)	98, 208, 345, 413, 422
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	59, 67
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	24, 27, 303
ApoI	RAATTY	1 cut(s)	195
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AspA2I	CCTAGG	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	564
AvrII	CCTAGG	1 cut(s)	565
BalI	TGGCCA	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	36, 39, 290
BccI	CCATC	2 cut(s)	121, 385
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	59, 67
BfaI	CTAG	5 cut(s)	99, 180, 414, 566, 576
BfoI	RGCGCY	1 cut(s)	187
BglII	AGATCT	3 cut(s)	533, 578, 625
BisI	GCNGC	3 cut(s)	25, 28, 304
BlnI	CCTAGG	1 cut(s)	565
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	3 cut(s)	26, 29, 305
Bme1390I	CCNGG	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	394, 451
BpmI	CTGGAG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	10, 336, 565
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	10, 336, 565
BseGI	GGATG	2 cut(s)	64, 409
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	159, 414
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	3 cut(s)	62, 122, 432
BseXI	GCAGC	3 cut(s)	36, 39, 290
BshFI	GGCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	59, 67
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	160, 415
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	10, 336, 565
BssMI	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
BssT1I	CCWWGG	2 cut(s)	10, 565
Bst2UI	CCWGG	1 cut(s)	338
Bst6I	CTCTTC	3 cut(s)	57, 99, 198
BstDEI	CTNAG	2 cut(s)	168, 423
BstF5I	GGATG	2 cut(s)	64, 409
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	7 cut(s)	226, 495, 536, 581, 628, 638, 651
BstMAI	GTCTC	2 cut(s)	59, 67
BstMBI	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	36, 39, 290
BstX2I	RGATCY	4 cut(s)	223, 533, 578, 625
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	4 cut(s)	223, 533, 578, 625
BsuRI	GGCC	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	610
BtsCI	GGATG	2 cut(s)	64, 409
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	268, 513
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	168, 423
DpnI	GATC	7 cut(s)	225, 494, 535, 580, 627, 637, 650
DpnII	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	57, 99, 198
EarI	CTCTTC	3 cut(s)	57, 99, 198
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	10, 565
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	305, 630
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	10, 565
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	10, 565
FaeI	CATG	2 cut(s)	271, 516
FaiI	YATR	6 cut(s)	83, 269, 435, 514, 606, 618
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	267, 512
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	25, 28, 304
FokI	GGATG	2 cut(s)	71, 416
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	25, 28, 304
FspBI	CTAG	5 cut(s)	99, 180, 414, 566, 576
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	3 cut(s)	25, 28, 304
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	271, 516
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	602
HindII	GTYRAC	1 cut(s)	602
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	1 cut(s)	564
Hpy166II	GTNNAC	2 cut(s)	274, 602
Hpy188I	TCNGA	3 cut(s)	223, 556, 648
Hpy188III	TCNNGA	3 cut(s)	72, 496, 588
Hpy8I	GTNNAC	2 cut(s)	274, 602
HpyAV	CCTTC	7 cut(s)	100, 229, 307, 493, 513, 585, 605
HpyCH4V	TGCA	2 cut(s)	245, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	168, 423
Hsp92II	CATG	2 cut(s)	271, 516
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	419, 557
LpnPI	CCDG	6 cut(s)	62, 320, 323, 350, 471, 634
Lsp1109I	GCAGC	3 cut(s)	36, 39, 290
LweI	GCATC	2 cut(s)	394, 451
MaeI	CTAG	5 cut(s)	99, 180, 414, 566, 576
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	7 cut(s)	225, 494, 535, 580, 627, 637, 650
MboI	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
MflI	RGATCY	4 cut(s)	223, 533, 578, 625
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	3 cut(s)	155, 195, 473
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	579
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MslI	CAYNNNNRTG	2 cut(s)	389, 511
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
NlaIII	CATG	2 cut(s)	271, 516
NmeAIII	GCCGAG	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	26, 29, 305
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PsuI	RGATCY	4 cut(s)	223, 533, 578, 625
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	389, 511
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	198
SatI	GCNGC	3 cut(s)	25, 28, 304
Sau3AI	GATC	7 cut(s)	223, 492, 533, 578, 625, 635, 648
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	394, 451
SmiMI	CAYNNNNRTG	2 cut(s)	389, 511
Sse9I	AATT	3 cut(s)	155, 195, 473
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	5 cut(s)	99, 180, 414, 566, 576
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	10, 565
TaqI	TCGA	3 cut(s)	71, 210, 264
TasI	AATT	3 cut(s)	155, 195, 473
TatI	WGTACW	1 cut(s)	324
TseI	GCWGC	3 cut(s)	24, 27, 303
TspDTI	ATGAA	3 cut(s)	17, 75, 366
TspGWI	ACGGA	2 cut(s)	485, 528
XapI	RAATTY	1 cut(s)	195
XmaJI	CCTAGG	1 cut(s)	565
XspI	CTAG	5 cut(s)	99, 180, 414, 566, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.