Rw3G025750

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009830
Physical Location & Seq
Forward (+)
34732075 .. 34733356
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025750.1

Sequence Viewer

Length: 429 bp
ATGCAGAAAATGAAGAGCATTGGGGGAAATGGCAGCAGTGGGAGGCTATCAATGGAGGAGAATGAGGATGAAGAGACTTCGAGACTGGCCATATTAACCTTCCAAGCTAGAGAAGATGAGATTGAGAGGAAGAAGATGGAAGTGAAGGAGAGGGTTGAACTTCAATTAGGTCGTGCGGAGGAAGAAACTAGGCGCTTGGCACAAATTTGGGAAGAGCTTGAAGCAATGGCAGATCCGATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTTAATCGAGAGCTGAAGCCCTTGGGACTCAGCTGCCAGAAGAAGGTGCTACATGCTCTTTTTTCTAAAACTATACTTCAGCTAGTCCGTCACTCAACAATACATGTCAGTGCATATGCATCTGCAGACCTTTTACATACCTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

142

Amino Acids

16.35

Weight (kDa)

7.89

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 7 - 108 3.7e-46 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 2 cut(s) 314, 341
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 3 cut(s) 158, 164, 221
AluBI AGCT 5 cut(s) 107, 217, 292, 312, 361
AluI AGCT 5 cut(s) 107, 217, 292, 312, 361
Alw26I GTCTC 2 cut(s) 68, 76
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 33, 312
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 45, 299
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 68, 76
BfaI CTAG 3 cut(s) 108, 189, 362
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 196
BisI GCNGC 2 cut(s) 34, 313
BlsI GCNGC 2 cut(s) 35, 314
BmsI GCATC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 45, 299
BshFI GGCC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 68, 76
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 321
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 2 cut(s) 8, 207
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 300
Bst6I CTCTTC 3 cut(s) 8, 66, 207
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 68, 76
BstMBI GATC 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 335, 386
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 45, 299
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 394
CfoI GCGC 1 cut(s) 195
CviAII CATG 3 cut(s) 277, 332, 383
CviJI RGCY 8 cut(s) 46, 89, 107, 217, 292, 298, 312, 361
CviKI_1 RGCY 8 cut(s) 46, 89, 107, 217, 292, 298, 312, 361
DdeI CTNAG 1 cut(s) 308
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 8, 66, 207
EarI CTCTTC 3 cut(s) 8, 66, 207
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 2 cut(s) 314, 341
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 280, 335, 386
FaiI YATR 8 cut(s) 92, 278, 333, 353, 384, 394, 396, 417
FaqI GGGAC 1 cut(s) 318
FatI CATG 3 cut(s) 276, 331, 382
FauNDI CATATG 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 34, 313
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 34, 313
FspBI CTAG 3 cut(s) 108, 189, 362
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 34, 313
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 195
Hin1II CATG 3 cut(s) 280, 335, 386
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 1 cut(s) 306
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 3 cut(s) 81, 287, 423
HpyAV CCTTC 4 cut(s) 109, 139, 238, 316
HpyCH4V TGCA 5 cut(s) 4, 254, 392, 398, 404
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 3 cut(s) 280, 335, 386
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 2 cut(s) 8, 207
LpnPI CCDG 2 cut(s) 71, 329
Lsp1109I GCAGC 2 cut(s) 45, 299
LweI GCATC 1 cut(s) 407
MaeI CTAG 3 cut(s) 108, 189, 362
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 9 cut(s) 25, 83, 125, 142, 145, 194, 224, 277, 331
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 164, 204
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 7 cut(s) 36, 49, 58, 120, 144, 172, 234
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 400
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 95, 282
MslI CAYNNNNRTG 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 312
NdeI CATATG 1 cut(s) 394
NdeII GATC 1 cut(s) 232
NlaIII CATG 3 cut(s) 280, 335, 386
NmuCI GTSAC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 335, 386
PciI ACATGT 1 cut(s) 382
PciSI GCTCTTC 2 cut(s) 8, 207
PkrI GCNGC 2 cut(s) 35, 314
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 1 cut(s) 382
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 387
SapI GCTCTTC 2 cut(s) 8, 207
SaqAI TTAA 2 cut(s) 95, 282
SatI GCNGC 2 cut(s) 34, 313
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 300
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 2 cut(s) 164, 204
SsiI CCGC 1 cut(s) 176
SspMI CTAG 3 cut(s) 108, 189, 362
StyI CCWWGG 1 cut(s) 300
TaqI TCGA 3 cut(s) 80, 273, 286
TasI AATT 2 cut(s) 164, 204
Tru1I TTAA 2 cut(s) 95, 282
Tru9I TTAA 2 cut(s) 95, 282
TscAI CASTG 2 cut(s) 43, 394
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 33, 312
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 26, 84
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 2 cut(s) 43, 394
XapI RAATTY 1 cut(s) 204
XceI RCATGY 2 cut(s) 335, 386
XspI CTAG 3 cut(s) 108, 189, 362
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.