Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009830

Physical Location & Seq

Genomic Coordinates Reverse (-)

29966694 .. 29967697

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1248800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAGAAAATGAATAGCCTTGGAAGTAATTCCATTTCCAATAGTAGTGGGAGGCTGTCAACGGAGGAGAACGACGATGATGAGATTTCGAGGCTGGCAATATCGGCATACCAAGCTAAAGAGGAAGAGATCGAGAGGAAGAAGATGGAGGTTAAGGAGAAAGTTGAACTTCAGTTGGGTCGTGCTGGGGAAGAAACTAGGCGTCTCGCGCAGATTTGGGAAAAGCTGGAAGTGATGGGAGATCCCATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGCTAATCGAGAGCTGAAGCCGCTGGGACTGAGCTGCCAGAAGAAGGTGCAATCTAGCATTTCACACCAATATAAACATTCGATCATGCATCTACTCTGCTGGCATTATATGTATATATTCTTGAAAATTAGAAGAAAAATAAACATCATCTTATCTGTCAACAAACAGGAAAAAGAATACAAAGAAGCCCTGGAAAGATTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCACACTTATGGAGCTGTTGACCGAGAGTGAGAAGCTGAGGATGCAGAAGCTAGAGGAGCTGAGCAAGAACCAACACTCTGAAATTTTCTATTTCAATTTGCATCTTTTCCAAAAAGATAATTATCAATGTAAAAGATTAAAGACCGAAGACGAACCTGCATTCAAAGTTTTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

Transcrip_act

Protein Analysis

234

Amino Acids

27.71

Weight (kDa)

9.02

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transcrip_act	PF04949	12 - 112	1.2e-43	Transcriptional activator
Transcrip_act	PF04949	147 - 198	3.3e-21	Transcriptional activator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36355 AT2G36355 AT2G36355 AT2G36355 AT3G52900
fragaria_vesca	FvH4_1g24952 FvH4_1g27500
malus_domestica	MD02G1248700.v1.1 MD02G1248800.v1.1 MD07G1067500.v1.1
prunus_persica	Prupe.2G084700_v2.0.a1
pyrus_communis	pycom02g21310 pycom07g05160
rosa_chinensis	RchiOBHm_Chr3g0489011
rosa_laevigata	RLG00000022899
rosa_rugosa	Rorug03G0242600 Rorug03G0242700
rosa_samantha	Rh3BG327700 Rh3CG325000 Rh3DG324000
rosa_wichuraiana	Rw3G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccII	CGCG	1 cut(s)	209
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	155, 323
AcyI	GRCGYC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	167, 412, 490, 619, 688
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	8 cut(s)	116, 226, 301, 321, 538, 559, 574, 583
AluI	AGCT	8 cut(s)	116, 226, 301, 321, 538, 559, 574, 583
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	2 cut(s)	139, 229
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	3 cut(s)	198, 342, 575
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	2 cut(s)	308, 322
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	2 cut(s)	309, 323
Bme1390I	CCNGG	1 cut(s)	479
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	3 cut(s)	385, 555, 634
BpiI	GAAGAC	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	19, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	19, 477
BseGI	GGATG	1 cut(s)	570
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	308, 551, 575
BseRI	GAGGAG	2 cut(s)	80, 593
BseXI	GCAGC	1 cut(s)	308
BseYI	CCCAGC	2 cut(s)	185, 310
Bsh1236I	CGCG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	683
Bsp143I	GATC	3 cut(s)	129, 241, 369
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	1 cut(s)	308
BspCNI	CTCAG	3 cut(s)	309, 552, 576
BspFNI	CGCG	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	19, 477
BssMI	GATC	3 cut(s)	129, 241, 369
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	96, 389
BstDEI	CTNAG	3 cut(s)	317, 560, 584
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	132, 244, 372
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	129, 241, 369
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 113, 208, 307, 565, 580
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	570
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	96, 389
CfoI	GCGC	1 cut(s)	211
CseI	GACGC	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	3 cut(s)	247, 286, 373
DdeI	CTNAG	3 cut(s)	317, 560, 584
DpnI	GATC	3 cut(s)	131, 243, 371
DpnII	GATC	3 cut(s)	129, 241, 369
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	155, 323
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	3 cut(s)	250, 289, 376
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	3 cut(s)	246, 285, 372
Fnu4HI	GCNGC	2 cut(s)	308, 322
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	2 cut(s)	308, 322
FspBI	CTAG	3 cut(s)	198, 342, 575
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	308, 322
GsaI	CCCAGC	2 cut(s)	189, 314
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	250, 289, 376
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	3 cut(s)	60, 448, 543
HindII	GTYRAC	3 cut(s)	60, 448, 543
HinfI	GANTC	1 cut(s)	486
Hpy166II	GTNNAC	3 cut(s)	60, 448, 543
Hpy188I	TCNGA	1 cut(s)	604
Hpy188III	TCNNGA	3 cut(s)	133, 296, 409
Hpy8I	GTNNAC	3 cut(s)	60, 448, 543
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	247, 325
HpyCH4V	TGCA	7 cut(s)	4, 263, 337, 376, 568, 625, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 113, 208, 307, 565, 580
HpyF3I	CTNAG	3 cut(s)	317, 560, 584
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	250, 289, 376
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	129, 241, 369
LmnI	GCTCC	2 cut(s)	535, 580
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	3 cut(s)	385, 555, 634
MaeI	CTAG	3 cut(s)	198, 342, 575
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	131, 243, 371
MboI	GATC	3 cut(s)	129, 241, 369
MboII	GAAGA	8 cut(s)	137, 151, 154, 203, 286, 340, 432, 683
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	5 cut(s)	28, 414, 606, 619, 643
MnlI	CCTC	9 cut(s)	45, 58, 84, 115, 129, 142, 243, 555, 571
Mph1103I	ATGCAT	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	3 cut(s)	153, 662, 700
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	6 cut(s)	104, 113, 208, 307, 565, 580
NdeII	GATC	3 cut(s)	129, 241, 369
NlaIII	CATG	3 cut(s)	250, 289, 376
NsiI	ATGCAT	1 cut(s)	378
PctI	GAATGC	1 cut(s)	683
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	309, 323
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	2 cut(s)	185, 310
PspGI	CCWGG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	3 cut(s)	153, 662, 700
SatI	GCNGC	2 cut(s)	308, 322
Sau3AI	GATC	3 cut(s)	129, 241, 369
ScrFI	CCNGG	1 cut(s)	479
SfaNI	GCATC	3 cut(s)	385, 555, 634
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	5 cut(s)	28, 414, 606, 619, 643
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	3 cut(s)	198, 342, 575
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	19
TaqI	TCGA	5 cut(s)	89, 132, 282, 295, 368
TaqII	GACCGA	2 cut(s)	560, 683
TasI	AATT	5 cut(s)	28, 414, 606, 619, 643
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	3 cut(s)	153, 662, 700
Tru9I	TTAA	3 cut(s)	153, 662, 700
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	26, 507
TspGWI	ACGGA	1 cut(s)	77
XapI	RAATTY	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	3 cut(s)	198, 342, 575
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.