AT3G52900

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009830
Physical Location & Seq
Forward (+)
19613078 .. 19614027
950 bp
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UTR
Exon/CDS
Intron
AT3G52900.1

Sequence Viewer

Length: 495 bp
ATGAGTAGCAAGAATAACTCCGGAGCTGCTGCAGTTTCTGGAGTCAACACCAACGGTAAGCTACCAATGGAGGACAATGAAGAAGAAGAGATATGGAAAGTTGCAGTGACGAGGTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAGTTCAACAGCGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACATTGGAAGAGCTAGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGTATGGTGAGGAAGAAAATCGACATGGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACAAAGACACATTGGAAGCTTTCAATGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCCATGTTAATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAACAAGACTGTTGGAACCTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

164

Amino Acids

18.86

Weight (kDa)

6.67

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 13 - 161 7.3e-69 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 20
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 119, 173, 373
AluBI AGCT 8 cut(s) 26, 61, 200, 232, 327, 368, 395, 421
AluI AGCT 8 cut(s) 26, 61, 200, 232, 327, 368, 395, 421
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 123
Aor13HI TCCGGA 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 26, 29
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 286, 389
AvaI CYCGRG 1 cut(s) 123
BbvI GCAGC 2 cut(s) 13, 16
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 3 cut(s) 27, 30, 179
BlsI GCNGC 3 cut(s) 28, 31, 180
BmeT110I CYCGRG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 484
BmsI GCATC 1 cut(s) 197
BpmI CTGGAG 2 cut(s) 60, 479
BsaWI WCCGGW 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 429, 462
BseAI TCCGGA 1 cut(s) 20
BseNI ACTGG 2 cut(s) 429, 462
BseXI GCAGC 2 cut(s) 13, 16
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 135, 247
BspACI CCGC 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 484
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 222
BsrI ACTGG 2 cut(s) 429, 462
BssMI GATC 2 cut(s) 135, 247
Bst4CI ACNGT 3 cut(s) 56, 157, 478
Bst6I CTCTTC 3 cut(s) 81, 126, 222
BstKTI GATC 2 cut(s) 138, 250
BstMBI GATC 2 cut(s) 135, 247
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 13, 16
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 38
CviAII CATG 2 cut(s) 292, 409
DpnI GATC 2 cut(s) 137, 249
DpnII GATC 2 cut(s) 135, 247
Eam1104I CTCTTC 3 cut(s) 81, 126, 222
EarI CTCTTC 3 cut(s) 81, 126, 222
Eco32I GATATC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 307
FaeI CATG 2 cut(s) 295, 412
FaiI YATR 6 cut(s) 94, 242, 254, 272, 293, 410
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 2 cut(s) 291, 408
Fnu4HI GCNGC 3 cut(s) 27, 30, 179
Fsp4HI GCNGC 3 cut(s) 27, 30, 179
FspBI CTAG 1 cut(s) 233
GluI GCNGC 3 cut(s) 27, 30, 179
GsuI CTGGAG 2 cut(s) 60, 479
HapII CCGG 1 cut(s) 21
Hin1II CATG 2 cut(s) 295, 412
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 2 cut(s) 42, 298
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 286, 389
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 4 cut(s) 21, 39, 139, 302
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 3 cut(s) 56, 157, 478
HpyCH4V TGCA 4 cut(s) 32, 104, 191, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 295, 412
Kpn2I TCCGGA 1 cut(s) 20
Kzo9I GATC 2 cut(s) 135, 247
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 23, 418
LpnPI CCDG 4 cut(s) 24, 34, 410, 443
Lsp1109I GCAGC 2 cut(s) 13, 16
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 137, 249
MboI GATC 2 cut(s) 135, 247
MboII GAAGA 9 cut(s) 92, 95, 98, 140, 143, 157, 160, 239, 292
MflI RGATCY 1 cut(s) 247
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 6 cut(s) 64, 105, 135, 187, 270, 454
MroI TCCGGA 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 4 cut(s) 159, 212, 413, 443
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 2 cut(s) 135, 247
NlaIII CATG 2 cut(s) 295, 412
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 28, 31, 180
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 484
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 4 cut(s) 159, 212, 413, 443
SatI GCNGC 3 cut(s) 27, 30, 179
Sau3AI GATC 2 cut(s) 135, 247
SchI GAGTC 1 cut(s) 51
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 413
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 233
TaaI ACNGT 3 cut(s) 56, 157, 478
TaqI TCGA 3 cut(s) 138, 288, 301
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 4 cut(s) 159, 212, 413, 443
Tru9I TTAA 4 cut(s) 159, 212, 413, 443
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 26, 29
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 93, 390
TspRI CASTG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.