Rh3DG324000

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009830
Physical Location & Seq
Forward (+)
35366983 .. 35379730
12748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG324000.1

Sequence Viewer

Length: 603 bp
ATGCAGAAAATGAAGAGCATTGGGGGAAATGGCAGCAGTGGGAGGCTATCAATGGAGGAGAATGAGGATGAAGAGACTTCGAGACTGGCCATATTAACCTTCCAAGCTAGAGAAGATGAGATTGAGAGGAAGAAGATGGAAGTGAAGGAGAGGGTTGAACTTCAATTAGGTCGTGCGGAGGAAGAAACTAGGCGCTTGGCACAAATTTGGGAAGAGCTTGAAGCAATGGCAGATCCGATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTTAATCGAGAGCTGAAGCCCTTGGGACTCAGCTGCCAGAAGAAGGAAAAAGAATACAAGGAAGTCCTGGAGAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCATAATGATGGAGGTACAACGTAGCAATCAAATGCGCCACTGTTTCGACAGGTCCCTTTCTGAACATCTTGCTATGGCATTTCTTGGAACCACAGAGCAGGCTTTCATAAATCTTCGAACAACTCATTTAAGGCCACAGGGATTGGCCCTAGGCAATATTAAGACACTCAAAGTCTTAATCTCGTTAACTTTGGTGTTGAGAATACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

200

Amino Acids

23.22

Weight (kDa)

8.49

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 7 - 143 1e-61 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 4 cut(s) 158, 164, 221, 358
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 5 cut(s) 107, 217, 292, 312, 354
AluI AGCT 5 cut(s) 107, 217, 292, 312, 354
Alw26I GTCTC 2 cut(s) 68, 76
AlwI GGATC 1 cut(s) 227
AoxI GGCC 3 cut(s) 87, 524, 537
ApeKI GCWGC 2 cut(s) 33, 312
ApoI RAATTY 1 cut(s) 204
AspA2I CCTAGG 1 cut(s) 541
AspLEI GCGC 2 cut(s) 195, 429
AspS9I GGNCC 2 cut(s) 444, 538
AsuII TTCGAA 1 cut(s) 508
AvaII GGWCC 1 cut(s) 444
AvrII CCTAGG 1 cut(s) 541
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 45, 299
BccI CCATC 2 cut(s) 130, 394
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 68, 76
BfaI CTAG 3 cut(s) 108, 189, 542
BfmI CTRYAG 1 cut(s) 599
BfoI RGCGCY 1 cut(s) 196
BisI GCNGC 2 cut(s) 34, 313
BlnI CCTAGG 1 cut(s) 541
BlsI GCNGC 2 cut(s) 35, 314
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 444, 538
BmiI GGNNCC 2 cut(s) 446, 481
BmrFI CCNGG 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 368
Bpu14I TTCGAA 1 cut(s) 508
BsaJI CCNNGG 2 cut(s) 300, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 300, 541
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 45, 299
BshFI GGCC 3 cut(s) 89, 526, 539
BslFI GGGAC 2 cut(s) 318, 430
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 68, 76
BsmFI GGGAC 2 cut(s) 318, 430
BsnI GGCC 3 cut(s) 89, 526, 539
Bsp119I TTCGAA 1 cut(s) 508
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 89, 526, 539
BspCNI CTCAG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 446, 481
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 2 cut(s) 8, 207
BspT104I TTCGAA 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 300, 541
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 300, 541
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 434, 600
Bst6I CTCTTC 3 cut(s) 8, 66, 207
BstBI TTCGAA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 2 cut(s) 195, 429
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 68, 76
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 599
BstV1I GCAGC 2 cut(s) 45, 299
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 3 cut(s) 89, 526, 539
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 430
Cac8I GCNNGC 1 cut(s) 492
CfoI GCGC 2 cut(s) 195, 429
Cfr13I GGNCC 2 cut(s) 444, 538
Csp6I GTAC 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 1 cut(s) 277
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 1 cut(s) 308
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 8, 66, 207
EarI CTCTTC 3 cut(s) 8, 66, 207
Eco130I CCWWGG 2 cut(s) 300, 541
Eco47I GGWCC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 2 cut(s) 300, 541
ErhI CCWWGG 2 cut(s) 300, 541
FaeI CATG 1 cut(s) 280
FaiI YATR 5 cut(s) 92, 278, 395, 467, 500
FaqI GGGAC 2 cut(s) 318, 430
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 34, 313
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 34, 313
FspBI CTAG 3 cut(s) 108, 189, 542
GlaI GCGC 2 cut(s) 194, 428
GluI GCNGC 2 cut(s) 34, 313
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 3 cut(s) 89, 526, 539
HhaI GCGC 2 cut(s) 195, 429
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 2 cut(s) 193, 427
HinP1I GCGC 2 cut(s) 193, 427
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 1 cut(s) 306
HpaI GTTAAC 1 cut(s) 579
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 2 cut(s) 237, 454
Hpy188III TCNNGA 2 cut(s) 81, 287
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 4 cut(s) 109, 139, 238, 316
HpyCH4III ACNGT 2 cut(s) 434, 600
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 2 cut(s) 4, 254
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 2 cut(s) 193, 427
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 2 cut(s) 8, 207
LpnPI CCDG 7 cut(s) 71, 329, 332, 359, 427, 476, 515
Lsp1109I GCAGC 2 cut(s) 45, 299
MaeI CTAG 3 cut(s) 108, 189, 542
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 164, 204
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 8 cut(s) 36, 49, 58, 120, 144, 172, 234, 397
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 6 cut(s) 95, 282, 521, 552, 569, 578
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 446, 481
NspV TTCGAA 1 cut(s) 508
PciSI GCTCTTC 2 cut(s) 8, 207
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 2 cut(s) 35, 314
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 446, 481
PspPI GGNCC 2 cut(s) 444, 538
PspPPI RGGWCCY 1 cut(s) 444
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 312
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 398
SapI GCTCTTC 2 cut(s) 8, 207
SaqAI TTAA 6 cut(s) 95, 282, 521, 552, 569, 578
SatI GCNGC 2 cut(s) 34, 313
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 444, 538
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 599
SfuI TTCGAA 1 cut(s) 508
SinI GGWCC 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 2 cut(s) 164, 204
SsiI CCGC 1 cut(s) 176
SspI AATATT 1 cut(s) 550
SspMI CTAG 3 cut(s) 108, 189, 542
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 2 cut(s) 300, 541
TaaI ACNGT 2 cut(s) 434, 600
TaiI ACGT 1 cut(s) 415
TaqI TCGA 5 cut(s) 80, 273, 286, 438, 508
TasI AATT 2 cut(s) 164, 204
Tru1I TTAA 6 cut(s) 95, 282, 521, 552, 569, 578
Tru9I TTAA 6 cut(s) 95, 282, 521, 552, 569, 578
TscAI CASTG 2 cut(s) 43, 437
TseI GCWGC 2 cut(s) 33, 312
TspDTI ATGAA 4 cut(s) 26, 84, 375, 487
TspRI CASTG 2 cut(s) 43, 437
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 204
XmaJI CCTAGG 1 cut(s) 541
XspI CTAG 3 cut(s) 108, 189, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.