MD02G1248700.v1.1

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0009830
Physical Location & Seq
Reverse (-)
29953995 .. 29954505
511 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1248700.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGGAGATCCCATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATTGACATGGCTAATCGAGAGCTGAAGCCGCTGGGACTGAGCTGCCAGAAGAAGGTGCAATCTAGCATTTCACACCAATATAAACATTCGATCATGCATCTACTCTGCTGGCATTATGTGTATATATTCTTGAAAATTAGAAGAAAAATAAACATCATCTTATCTGTCAACAAACAGGAAAAAGAATACAAAGAAGCCCTGGAAAGATTCAATGAAGAGAACAAAGAAAAGGCTCAACTTGTAACCACACTTATGGATAGTGAGAAGCTGAGGATGCAGAAGCTAGAGGAGCTGAGCAAGAACATAGAACCAACACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

122

Amino Acids

14.46

Weight (kDa)

9.54

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 1 - 34 7.6e-13 Transcriptional activator
Transcrip_act PF04949 69 - 118 1.4e-16 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 2
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 178, 256
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 5 cut(s) 67, 87, 313, 328, 337
AluI AGCT 5 cut(s) 67, 87, 313, 328, 337
AlwI GGATC 1 cut(s) 2
ApeKI GCWGC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 108, 329
BisI GCNGC 2 cut(s) 74, 88
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 2 cut(s) 75, 89
Bme1390I CCNGG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 151, 309
Bpu10I CCTNAGC 1 cut(s) 314
Bpu1102I GCTNAGC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 74, 305, 329
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 7, 135
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 3 cut(s) 75, 306, 330
BspPI GGATC 1 cut(s) 2
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 7, 135
Bst2UI CCWGG 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 83, 314, 338
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 2 cut(s) 10, 138
BstMBI GATC 2 cut(s) 7, 135
BstMWI GCNNNNNNNGC 3 cut(s) 73, 319, 334
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 7
BtsCI GGATG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 155
CviAII CATG 3 cut(s) 13, 52, 139
CviJI RGCY 9 cut(s) 56, 67, 73, 87, 242, 278, 313, 328, 337
CviKI_1 RGCY 9 cut(s) 56, 67, 73, 87, 242, 278, 313, 328, 337
DdeI CTNAG 3 cut(s) 83, 314, 338
DpnI GATC 2 cut(s) 9, 137
DpnII GATC 2 cut(s) 7, 135
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 144
FaeI CATG 3 cut(s) 16, 55, 142
FaiI YATR 9 cut(s) 14, 53, 126, 140, 162, 168, 170, 299, 350
FaqI GGGAC 1 cut(s) 93
FatI CATG 3 cut(s) 12, 51, 138
Fnu4HI GCNGC 2 cut(s) 74, 88
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 74, 88
FspBI CTAG 2 cut(s) 108, 329
GluI GCNGC 2 cut(s) 74, 88
GsaI CCCAGC 1 cut(s) 80
Hin1II CATG 3 cut(s) 16, 55, 142
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 2 cut(s) 62, 175
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 13, 91
HpyCH4V TGCA 4 cut(s) 29, 103, 142, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 319, 334
HpyF3I CTNAG 3 cut(s) 83, 314, 338
Hsp92II CATG 3 cut(s) 16, 55, 142
Kzo9I GATC 2 cut(s) 7, 135
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 6 cut(s) 62, 104, 139, 206, 230, 257
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 2 cut(s) 151, 309
MaeI CTAG 2 cut(s) 108, 329
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 9, 137
MboI GATC 2 cut(s) 7, 135
MboII GAAGA 4 cut(s) 52, 106, 198, 272
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 45, 180
MnlI CCTC 3 cut(s) 9, 309, 325
Mph1103I ATGCAT 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 73, 319, 334
NdeII GATC 2 cut(s) 7, 135
NlaIII CATG 3 cut(s) 16, 55, 142
NsiI ATGCAT 1 cut(s) 144
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 2 cut(s) 75, 89
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 296
SatI GCNGC 2 cut(s) 74, 88
Sau3AI GATC 2 cut(s) 7, 135
ScrFI CCNGG 1 cut(s) 245
SetI ASST 6 cut(s) 69, 89, 102, 315, 330, 339
SfaNI GCATC 2 cut(s) 151, 309
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 2 cut(s) 45, 180
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 108, 329
StyD4I CCNGG 1 cut(s) 243
TaqI TCGA 2 cut(s) 61, 134
TasI AATT 2 cut(s) 45, 180
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 252
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 273
XspI CTAG 2 cut(s) 108, 329
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.