Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009830

Physical Location & Seq

Genomic Coordinates Forward (+)

4420432 .. 4421299

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAGAAAATGAAGAGCCTTGGGAGTAATTCCTTTGCCAGTAGTAGTGGGAGGCTGTCGACGGAGGAGAACGATGATGAGGAGATTTCGAGGCTGGCAATATCGGCGTACCAAGCTAGAGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTTAAGGAGAAAGTTGAAGCTCAGTTGGGTCGCGCTGAGGAAGAAACTAGGCGTCTGACGCAGATTTGGGAAGAGCTGGAAGTGCTGGGAGATCCCATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGCTAATCGAGAGCTGAAGCCGCTGGGACTGAGCTGCCAGAAGAAGGAAAAAGAATACAAAGAAGCCCTGGAAAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAAGCACACTTATGGAGCTGTTGACCGAGAGTGAGAAGCTGAGGATGCAGAAGCTAGAGGAGCTGAGCAAGAACATAAAACCAACACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

Transcrip_act

Protein Analysis

163

Amino Acids

18.84

Weight (kDa)

5.61

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36355 AT2G36355 AT2G36355 AT2G36355 AT3G52900
fragaria_vesca	FvH4_1g24952 FvH4_1g27500
malus_domestica	MD02G1248700.v1.1 MD02G1248800.v1.1 MD07G1067500.v1.1
prunus_persica	Prupe.2G084700_v2.0.a1
pyrus_communis	pycom02g21310 pycom07g05160
rosa_chinensis	RchiOBHm_Chr3g0489011
rosa_laevigata	RLG00000022899
rosa_rugosa	Rorug03G0242600 Rorug03G0242700
rosa_samantha	Rh3BG327700 Rh3CG325000 Rh3DG324000
rosa_wichuraiana	Rw3G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	183
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	167, 367
AjnI	CCWGG	1 cut(s)	354
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	185
BbvCI	CCTCAGC	2 cut(s)	186, 437
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	356
BfaI	CTAG	3 cut(s)	117, 198, 452
BisI	GCNGC	2 cut(s)	308, 322
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	2 cut(s)	309, 323
Bme1390I	CCNGG	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	186, 437
Bpu1102I	GCTNAGC	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	19, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	19, 354
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	5 cut(s)	177, 185, 308, 428, 452
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	80, 95, 470
BseXI	GCAGC	1 cut(s)	308
BseYI	CCCAGC	2 cut(s)	235, 310
Bsh1236I	CGCG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	241
Bsp1720I	GCTNAGC	1 cut(s)	461
BspACI	CCGC	1 cut(s)	308
BspCNI	CTCAG	5 cut(s)	178, 184, 309, 429, 453
BspFNI	CGCG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	2 cut(s)	8, 216
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	19, 354
BssMI	GATC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	356
Bst6I	CTCTTC	3 cut(s)	8, 120, 216
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	5 cut(s)	171, 186, 317, 437, 461
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 113, 208, 232, 307, 442, 457
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	2 cut(s)	191, 217
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	247, 286
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	5 cut(s)	171, 186, 317, 437, 461
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	8, 120, 216
EarI	CTCTTC	3 cut(s)	8, 120, 216
Eco130I	CCWWGG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	250, 289
FaiI	YATR	5 cut(s)	248, 287, 410, 473, 487
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	2 cut(s)	246, 285
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	308, 322
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	308, 322
FspBI	CTAG	3 cut(s)	117, 198, 452
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	308, 322
GsaI	CCCAGC	2 cut(s)	239, 314
HgaI	GACGC	2 cut(s)	191, 217
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	2 cut(s)	250, 289
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	2 cut(s)	60, 420
HindII	GTYRAC	2 cut(s)	60, 420
HindIII	AAGCTT	1 cut(s)	361
Hpy166II	GTNNAC	2 cut(s)	60, 420
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	2 cut(s)	60, 420
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	247, 325
HpyCH4V	TGCA	3 cut(s)	4, 263, 445
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 113, 208, 232, 307, 442, 457
HpyF3I	CTNAG	5 cut(s)	171, 186, 317, 437, 461
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	250, 289
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	241
LguI	GCTCTTC	2 cut(s)	8, 216
LmnI	GCTCC	2 cut(s)	412, 457
LpnPI	CCDG	8 cut(s)	52, 80, 212, 221, 296, 338, 341, 368
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	3 cut(s)	117, 198, 452
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	8 cut(s)	25, 137, 151, 154, 203, 233, 286, 340
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	28
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	7 cut(s)	104, 113, 208, 232, 307, 442, 457
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	250, 289
PciSI	GCTCTTC	2 cut(s)	8, 216
PkrI	GCNGC	2 cut(s)	309, 323
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	2 cut(s)	235, 310
PspGI	CCWGG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	407
SalI	GTCGAC	1 cut(s)	58
SapI	GCTCTTC	2 cut(s)	8, 216
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	308, 322
Sau3AI	GATC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	3 cut(s)	117, 198, 452
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	19
TaqI	TCGA	4 cut(s)	59, 89, 282, 295
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	1 cut(s)	28
TauI	GCSGC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	26, 384
TspGWI	ACGGA	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	3 cut(s)	117, 198, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.