Prupe.2G084700_v2.0.a1

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009830
Physical Location & Seq
Forward (+)
13384031 .. 13385857
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G084700.1

Sequence Viewer

Length: 480 bp
ATGCAGAAAATGAAGAGCCTTGGGAGCATTTCCAATAATGGGAGGCTATCAACAGAGGAGAACGAGGATGAGGAAGTTTCAAGATTGGCAATATCAGCATGGGAAGCTAGAGAGGAAGAGATTGAGAGGAAGAAGATGGAAGTTAAGGAGAAAGTTGAACTTCAATTGGGTCGTGCTGAGGAAGAAACTAGGCGTTTGGCACAGATTTGGGAAGAGCTCGAAGTGATGGGAGATCCCTTGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTTAACCGAGAGCTGAAGCCATTGGGGCTGAGCTACCAGAAGAAGGAAAAAGAATATAAAGAAGCGCTGGAAAGCTTCAATGAAAAGAACAAAGAGAAGGCTCAACTTGTAACCACACTGATGGAGATGCTGACCGAGAGCGAGAGATTGAGGATGCAGAAGCTAGAGGAGCTGAGCAAGAACATAGAACCCACACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

160

Amino Acids

18.79

Weight (kDa)

5.31

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 345
AfiI CCNNNNNNNGG 2 cut(s) 39, 322
AgsI TTSAA 4 cut(s) 81, 158, 164, 358
AluBI AGCT 7 cut(s) 107, 217, 292, 312, 354, 442, 451
AluI AGCT 7 cut(s) 107, 217, 292, 312, 354, 442, 451
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 345
AspLEI GCGC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 177
BccI CCATC 3 cut(s) 130, 220, 394
BfaI CTAG 3 cut(s) 108, 189, 443
BfoI RGCGCY 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 304
BlpI GCTNAGC 2 cut(s) 308, 452
BmsI GCATC 2 cut(s) 396, 423
Bpu10I CCTNAGC 1 cut(s) 177
Bpu1102I GCTNAGC 2 cut(s) 308, 452
BpuEI CTTGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 322
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 73, 438
BseLI CCNNNNNNNGG 2 cut(s) 39, 322
BseMII CTCAG 3 cut(s) 168, 299, 443
BseRI GAGGAG 2 cut(s) 71, 461
BsiHKAI GWGCWC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 39, 322
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 232
Bsp1720I GCTNAGC 2 cut(s) 308, 452
BspCNI CTCAG 3 cut(s) 169, 300, 444
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 2 cut(s) 8, 207
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 19
Bst6I CTCTTC 3 cut(s) 8, 111, 207
BstDEI CTNAG 3 cut(s) 177, 308, 452
BstF5I GGATG 2 cut(s) 73, 438
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 5 cut(s) 24, 95, 104, 304, 448
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 232
BtsCI GGATG 2 cut(s) 73, 438
BtsIMutI CAGTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 346
CviAII CATG 2 cut(s) 99, 277
DdeI CTNAG 3 cut(s) 177, 308, 452
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 8, 111, 207
EarI CTCTTC 3 cut(s) 8, 111, 207
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 219
Eco47III AGCGCT 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 102, 280
FaiI YATR 4 cut(s) 100, 278, 336, 464
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 2 cut(s) 98, 276
FokI GGATG 2 cut(s) 80, 445
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 3 cut(s) 108, 189, 443
GlaI GCGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 347
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 102, 280
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 352
HpaI GTTAAC 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 238, 316, 370
HpyCH4V TGCA 3 cut(s) 4, 254, 436
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 95, 104, 304, 448
HpyF3I CTNAG 3 cut(s) 177, 308, 452
Hsp92II CATG 2 cut(s) 102, 280
HspAI GCGC 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 2 cut(s) 8, 207
LmnI GCTCC 2 cut(s) 24, 448
LpnPI CCDG 2 cut(s) 329, 332
LweI GCATC 2 cut(s) 396, 423
MaeI CTAG 3 cut(s) 108, 189, 443
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 8 cut(s) 25, 128, 142, 145, 194, 224, 277, 331
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 164
MseI TTAA 2 cut(s) 144, 282
MslI CAYNNNNRTG 1 cut(s) 398
MunI CAATTG 1 cut(s) 164
MwoI GCNNNNNNNGC 5 cut(s) 24, 95, 104, 304, 448
NdeII GATC 1 cut(s) 232
NlaIII CATG 2 cut(s) 102, 280
PciSI GCTCTTC 2 cut(s) 8, 207
Psp124BI GAGCTC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 2 cut(s) 8, 207
SaqAI TTAA 2 cut(s) 144, 282
Sau3AI GATC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 109, 219, 294, 314, 356, 444, 453
SfaNI GCATC 2 cut(s) 396, 423
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 1 cut(s) 164
SspMI CTAG 3 cut(s) 108, 189, 443
SstI GAGCTC 1 cut(s) 219
StyI CCWWGG 1 cut(s) 19
TaqI TCGA 2 cut(s) 219, 273
TaqII GACCGA 1 cut(s) 428
TasI AATT 1 cut(s) 164
Tru1I TTAA 2 cut(s) 144, 282
Tru9I TTAA 2 cut(s) 144, 282
TscAI CASTG 1 cut(s) 402
TspDTI ATGAA 2 cut(s) 26, 375
TspRI CASTG 1 cut(s) 402
XspI CTAG 3 cut(s) 108, 189, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.