Zinc finger (C2H2-type) family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36480 AT2G36480 |
| fragaria_vesca | FvH4_6g17910 FvH4_6g17910 |
| malus_domestica | MD12G1018100.v1.1 MD14G1016100.v1.1 |
| prunus_persica | Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 |
| pyrus_communis | pycom12g01510 pycom14g01390 |
| rosa_chinensis | RchiOBHm_Chr3g0472161 |
| rosa_laevigata | RLG00000024100 |
| rosa_multiflora | Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00409180 |
| rosa_rugosa | Rorug03G0122700 |
| rosa_samantha | Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500 |
| rosa_wichuraiana | Rw3G016630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 166 |
| AbsI | CCTCGAGG | 1 cut(s) | 401 |
| Acc16I | TGCGCA | 1 cut(s) | 2689 |
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| Acc65I | GGTACC | 1 cut(s) | 406 |
| AccB1I | GGYRCC | 2 cut(s) | 406, 491 |
| AccI | GTMKAC | 1 cut(s) | 16 |
| AccII | CGCG | 2 cut(s) | 101, 103 |
| AclWI | GGATC | 9 cut(s) | 24, 32, 209, 1070, 1083, 1421, 1552, 1637, 2105 |
| AcsI | RAATTY | 5 cut(s) | 1156, 1393, 1402, 1494, 1527 |
| AcuI | CTGAAG | 2 cut(s) | 590, 734 |
| AfaI | GTAC | 8 cut(s) | 133, 278, 408, 437, 485, 1058, 1698, 2079 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 102, 1541 |
| AflII | CTTAAG | 1 cut(s) | 2128 |
| AflIII | ACRYGT | 1 cut(s) | 1889 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1771 |
| AjnI | CCWGG | 6 cut(s) | 40, 59, 494, 575, 1682, 1792 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 339, 371 |
| Alw21I | GWGCWC | 2 cut(s) | 300, 1624 |
| Alw26I | GTCTC | 5 cut(s) | 788, 1315, 2047, 2061, 2672 |
| AlwI | GGATC | 9 cut(s) | 24, 32, 209, 1070, 1083, 1421, 1552, 1637, 2105 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 424, 659, 1547, 1781 |
| Ama87I | CYCGRG | 3 cut(s) | 401, 1930, 2522 |
| AoxI | GGCC | 5 cut(s) | 83, 1795, 2103, 2288, 2796 |
| ApoI | RAATTY | 5 cut(s) | 1156, 1393, 1402, 1494, 1527 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1364, 1396 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1873, 2622 |
| Asp718I | GGTACC | 1 cut(s) | 406 |
| AspA2I | CCTAGG | 1 cut(s) | 1646 |
| AspLEI | GCGC | 4 cut(s) | 103, 699, 747, 2690 |
| AspS9I | GGNCC | 6 cut(s) | 44, 872, 1172, 2288, 2356, 2804 |
| AsuC2I | CCSGG | 3 cut(s) | 1657, 1931, 1932 |
| AsuHPI | GGTGA | 5 cut(s) | 157, 1015, 2062, 2293, 2393 |
| AsuII | TTCGAA | 2 cut(s) | 2144, 2165 |
| AvaI | CYCGRG | 3 cut(s) | 401, 1930, 2522 |
| AvaII | GGWCC | 5 cut(s) | 44, 872, 1172, 2356, 2804 |
| AvrII | CCTAGG | 1 cut(s) | 1646 |
| AxyI | CCTNAGG | 2 cut(s) | 504, 2304 |
| BaeGI | GKGCMC | 2 cut(s) | 1446, 1939 |
| BamHI | GGATCC | 1 cut(s) | 1075 |
| BanI | GGYRCC | 2 cut(s) | 406, 491 |
| BanII | GRGCYC | 3 cut(s) | 300, 927, 1624 |
| BauI | CACGAG | 2 cut(s) | 862, 2833 |
| BbsI | GAAGAC | 1 cut(s) | 2174 |
| Bbv12I | GWGCWC | 2 cut(s) | 300, 1624 |
| BccI | CCATC | 8 cut(s) | 641, 1097, 1714, 2188, 2278, 2299, 2335, 2448 |
| BceAI | ACGGC | 6 cut(s) | 150, 156, 356, 1158, 1715, 2648 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1283, 1317, 2824, 2858 |
| BciT130I | CCWGG | 6 cut(s) | 42, 61, 496, 577, 1684, 1794 |
| BciVI | GTATCC | 1 cut(s) | 676 |
| BclI | TGATCA | 2 cut(s) | 415, 2215 |
| BcnI | CCSGG | 3 cut(s) | 1657, 1931, 1932 |
| BcoDI | GTCTC | 5 cut(s) | 788, 1315, 2047, 2061, 2672 |
| BfaI | CTAG | 7 cut(s) | 734, 813, 996, 1146, 1485, 1647, 1847 |
| BfmI | CTRYAG | 2 cut(s) | 1818, 2455 |
| BfoI | RGCGCY | 2 cut(s) | 700, 748 |
| BfrI | CTTAAG | 1 cut(s) | 2128 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BfuI | GTATCC | 1 cut(s) | 676 |
| BlnI | CCTAGG | 1 cut(s) | 1646 |
| BlpI | GCTNAGC | 4 cut(s) | 65, 294, 681, 2265 |
| BmcAI | AGTACT | 1 cut(s) | 485 |
| Bme1390I | CCNGG | 9 cut(s) | 42, 61, 496, 577, 1657, 1684, 1794, 1931, 1932 |
| Bme18I | GGWCC | 5 cut(s) | 44, 872, 1172, 2356, 2804 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1771 |
| BmeT110I | CYCGRG | 3 cut(s) | 401, 1930, 2522 |
| BmgT120I | GGNCC | 6 cut(s) | 44, 872, 1172, 2288, 2356, 2804 |
| BmiI | GGNNCC | 9 cut(s) | 408, 493, 574, 1077, 1174, 1703, 2187, 2253, 2289 |
| BmrFI | CCNGG | 9 cut(s) | 42, 61, 496, 577, 1657, 1684, 1794, 1931, 1932 |
| BmrI | ACTGGG | 2 cut(s) | 1170, 1456 |
| BmsI | GCATC | 5 cut(s) | 571, 720, 860, 2076, 2251 |
| BmuI | ACTGGG | 2 cut(s) | 1170, 1456 |
| BpiI | GAAGAC | 1 cut(s) | 2174 |
| BpmI | CTGGAG | 4 cut(s) | 366, 851, 876, 2766 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1540 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 65, 294, 681, 2265 |
| Bpu14I | TTCGAA | 2 cut(s) | 2144, 2165 |
| BpuEI | CTTGAG | 1 cut(s) | 1234 |
| BpuMI | CCSGG | 3 cut(s) | 1657, 1931, 1932 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1080 |
| BsaI | GGTCTC | 2 cut(s) | 788, 2672 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 339, 369, 2764, 2794 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 102, 1541 |
| Bse118I | RCCGGY | 1 cut(s) | 244 |
| Bse1I | ACTGG | 9 cut(s) | 294, 834, 1176, 1329, 1451, 1751, 2068, 2582, 2799 |
| Bse21I | CCTNAGG | 2 cut(s) | 504, 2304 |
| Bse3DI | GCAATG | 1 cut(s) | 2840 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1080 |
| BseBI | CCWGG | 6 cut(s) | 42, 61, 496, 577, 1684, 1794 |
| BseGI | GGATG | 8 cut(s) | 250, 396, 592, 711, 1046, 1108, 1693, 2754 |
| BseJI | GATNNNNATC | 1 cut(s) | 1080 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 102, 1541 |
| BseMI | GCAATG | 1 cut(s) | 2840 |
| BseNI | ACTGG | 9 cut(s) | 294, 834, 1176, 1329, 1451, 1751, 2068, 2582, 2799 |
| BseSI | GKGCMC | 2 cut(s) | 1446, 1939 |
| BseYI | CCCAGC | 1 cut(s) | 1387 |
| BsgI | GTGCAG | 4 cut(s) | 270, 2070, 2307, 2431 |
| Bsh1236I | CGCG | 2 cut(s) | 101, 103 |
| BshFI | GGCC | 5 cut(s) | 85, 1797, 2105, 2290, 2798 |
| BshNI | GGYRCC | 2 cut(s) | 406, 491 |
| BsiHKAI | GWGCWC | 2 cut(s) | 300, 1624 |
| BsiHKCI | CYCGRG | 3 cut(s) | 401, 1930, 2522 |
| BsiSI | CCGG | 4 cut(s) | 82, 245, 1657, 1931 |
| BslFI | GGGAC | 3 cut(s) | 773, 774, 1158 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 102, 1541 |
| BsmAI | GTCTC | 5 cut(s) | 788, 1315, 2047, 2061, 2672 |
| BsmBI | CGTCTC | 1 cut(s) | 2061 |
| BsmFI | GGGAC | 3 cut(s) | 773, 774, 1158 |
| BsmI | GAATGC | 1 cut(s) | 547 |
| BsnI | GGCC | 5 cut(s) | 85, 1797, 2105, 2290, 2798 |
| Bso31I | GGTCTC | 2 cut(s) | 788, 2672 |
| BsoBI | CYCGRG | 3 cut(s) | 401, 1930, 2522 |
| Bsp119I | TTCGAA | 2 cut(s) | 2144, 2165 |
| Bsp1286I | GDGCHC | 5 cut(s) | 300, 927, 1446, 1624, 1939 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 65, 294, 681, 2265 |
| BspANI | GGCC | 5 cut(s) | 85, 1797, 2105, 2290, 2798 |
| BspFNI | CGCG | 2 cut(s) | 101, 103 |
| BspHI | TCATGA | 2 cut(s) | 1857, 1915 |
| BspLI | GGNNCC | 9 cut(s) | 408, 493, 574, 1077, 1174, 1703, 2187, 2253, 2289 |
| BspMAI | CTGCAG | 1 cut(s) | 2459 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 9 cut(s) | 24, 32, 209, 1070, 1083, 1421, 1552, 1637, 2105 |
| BspQI | GCTCTTC | 1 cut(s) | 1612 |
| BspT104I | TTCGAA | 2 cut(s) | 2144, 2165 |
| BspT107I | GGYRCC | 2 cut(s) | 406, 491 |
| BspTI | CTTAAG | 1 cut(s) | 2128 |
| BspTNI | GGTCTC | 2 cut(s) | 788, 2672 |
| BsrDI | GCAATG | 1 cut(s) | 2840 |
| BsrFI | RCCGGY | 1 cut(s) | 244 |
| BsrI | ACTGG | 9 cut(s) | 294, 834, 1176, 1329, 1451, 1751, 2068, 2582, 2799 |
| BssAI | RCCGGY | 1 cut(s) | 244 |
| BssSI | CACGAG | 2 cut(s) | 862, 2833 |
| BssT1I | CCWWGG | 5 cut(s) | 1355, 1376, 1508, 1646, 2352 |
| Bst2BI | CACGAG | 2 cut(s) | 862, 2833 |
| Bst2UI | CCWGG | 6 cut(s) | 42, 61, 496, 577, 1684, 1794 |
| Bst4CI | ACNGT | 6 cut(s) | 21, 151, 435, 2210, 2543, 2792 |
| Bst6I | CTCTTC | 3 cut(s) | 1221, 1612, 1856 |
| BstAFI | CTTAAG | 1 cut(s) | 2128 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2454 |
| BstBI | TTCGAA | 2 cut(s) | 2144, 2165 |
| BstC8I | GCNNGC | 3 cut(s) | 1418, 1519, 1950 |
| BstF5I | GGATG | 8 cut(s) | 250, 396, 592, 711, 1046, 1108, 1693, 2754 |
| BstFNI | CGCG | 2 cut(s) | 101, 103 |
| BstH2I | RGCGCY | 2 cut(s) | 700, 748 |
| BstHHI | GCGC | 4 cut(s) | 103, 699, 747, 2690 |
| BstMAI | GTCTC | 5 cut(s) | 788, 1315, 2047, 2061, 2672 |
| BstNI | CCWGG | 6 cut(s) | 42, 61, 496, 577, 1684, 1794 |
| BstNSI | RCATGY | 3 cut(s) | 559, 1893, 2694 |
| BstSCI | CCNGG | 9 cut(s) | 40, 59, 494, 575, 1655, 1682, 1792, 1929, 1930 |
| BstSFI | CTRYAG | 2 cut(s) | 1818, 2455 |
| BstSLI | GKGCMC | 2 cut(s) | 1446, 1939 |
| BstUI | CGCG | 2 cut(s) | 101, 103 |
| BstV2I | GAAGAC | 1 cut(s) | 2174 |
| BstX2I | RGATCY | 6 cut(s) | 29, 37, 1075, 1426, 1544, 2110 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1103 |
| BstYI | RGATCY | 6 cut(s) | 29, 37, 1075, 1426, 1544, 2110 |
| Bsu36I | CCTNAGG | 2 cut(s) | 504, 2304 |
| BsuI | GTATCC | 1 cut(s) | 676 |
| BsuRI | GGCC | 5 cut(s) | 85, 1797, 2105, 2290, 2798 |
| BtsCI | GGATG | 8 cut(s) | 250, 396, 592, 711, 1046, 1108, 1693, 2754 |
| BtsIMutI | CAGTG | 8 cut(s) | 156, 217, 287, 431, 1444, 1758, 2797, 2806 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 3 cut(s) | 1418, 1519, 1950 |
| CaiI | CAGNNNCTG | 4 cut(s) | 424, 659, 1547, 1781 |
| CciI | TCATGA | 2 cut(s) | 1857, 1915 |
| CfoI | GCGC | 4 cut(s) | 103, 699, 747, 2690 |
| Cfr10I | RCCGGY | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 6 cut(s) | 44, 872, 1172, 2288, 2356, 2804 |
| Cfr9I | CCCGGG | 1 cut(s) | 1930 |
| CseI | GACGC | 1 cut(s) | 2043 |
| Csp6I | GTAC | 8 cut(s) | 132, 277, 407, 436, 484, 1057, 1697, 2078 |
| CviQI | GTAC | 8 cut(s) | 132, 277, 407, 436, 484, 1057, 1697, 2078 |
| DraI | TTTAAA | 2 cut(s) | 1726, 2013 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1771 |
| Eam1104I | CTCTTC | 3 cut(s) | 1221, 1612, 1856 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1771 |
| EarI | CTCTTC | 3 cut(s) | 1221, 1612, 1856 |
| EciI | GGCGGA | 1 cut(s) | 2396 |
| Ecl136II | GAGCTC | 2 cut(s) | 298, 1622 |
| Eco130I | CCWWGG | 5 cut(s) | 1355, 1376, 1508, 1646, 2352 |
| Eco147I | AGGCCT | 2 cut(s) | 1797, 2105 |
| Eco24I | GRGCYC | 3 cut(s) | 300, 927, 1624 |
| Eco31I | GGTCTC | 2 cut(s) | 788, 2672 |
| Eco32I | GATATC | 2 cut(s) | 943, 2157 |
| Eco47I | GGWCC | 5 cut(s) | 44, 872, 1172, 2356, 2804 |
| Eco53kI | GAGCTC | 2 cut(s) | 298, 1622 |
| Eco57I | CTGAAG | 2 cut(s) | 590, 734 |
| Eco81I | CCTNAGG | 2 cut(s) | 504, 2304 |
| Eco88I | CYCGRG | 3 cut(s) | 401, 1930, 2522 |
| EcoICRI | GAGCTC | 2 cut(s) | 298, 1622 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2356 |
| EcoRI | GAATTC | 2 cut(s) | 1393, 1494 |
| EcoRII | CCWGG | 6 cut(s) | 40, 59, 494, 575, 1682, 1792 |
| EcoRV | GATATC | 2 cut(s) | 943, 2157 |
| EcoT14I | CCWWGG | 5 cut(s) | 1355, 1376, 1508, 1646, 2352 |
| EcoT22I | ATGCAT | 1 cut(s) | 549 |
| EcoT38I | GRGCYC | 3 cut(s) | 300, 927, 1624 |
| ErhI | CCWWGG | 5 cut(s) | 1355, 1376, 1508, 1646, 2352 |
| Esp3I | CGTCTC | 1 cut(s) | 2061 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1111, 1143 |
| FaqI | GGGAC | 3 cut(s) | 773, 774, 1158 |
| FauI | CCCGC | 1 cut(s) | 2587 |
| FbaI | TGATCA | 2 cut(s) | 415, 2215 |
| FblI | GTMKAC | 1 cut(s) | 16 |
| FokI | GGATG | 8 cut(s) | 237, 383, 579, 698, 1053, 1115, 1700, 2761 |
| FriOI | GRGCYC | 3 cut(s) | 300, 927, 1624 |
| FspAI | RTGCGCAY | 1 cut(s) | 2689 |
| FspBI | CTAG | 7 cut(s) | 734, 813, 996, 1146, 1485, 1647, 1847 |
| FspI | TGCGCA | 1 cut(s) | 2689 |
| GlaI | GCGC | 4 cut(s) | 102, 698, 746, 2689 |
| GsaI | CCCAGC | 1 cut(s) | 1391 |
| GsuI | CTGGAG | 4 cut(s) | 366, 851, 876, 2766 |
| HaeII | RGCGCY | 2 cut(s) | 700, 748 |
| HaeIII | GGCC | 5 cut(s) | 85, 1797, 2105, 2290, 2798 |
| HapII | CCGG | 4 cut(s) | 82, 245, 1657, 1931 |
| HgaI | GACGC | 1 cut(s) | 2043 |
| HhaI | GCGC | 4 cut(s) | 103, 699, 747, 2690 |
| Hin6I | GCGC | 4 cut(s) | 101, 697, 745, 2688 |
| HinP1I | GCGC | 4 cut(s) | 101, 697, 745, 2688 |
| HincII | GTYRAC | 2 cut(s) | 535, 1927 |
| HindII | GTYRAC | 2 cut(s) | 535, 1927 |
| HpaII | CCGG | 4 cut(s) | 82, 245, 1657, 1931 |
| HphI | GGTGA | 5 cut(s) | 157, 1015, 2062, 2293, 2393 |
| Hpy166II | GTNNAC | 6 cut(s) | 17, 535, 1745, 1927, 2396, 2633 |
| Hpy8I | GTNNAC | 6 cut(s) | 17, 535, 1745, 1927, 2396, 2633 |
| Hpy99I | CGWCG | 1 cut(s) | 377 |
| HpyAV | CCTTC | 7 cut(s) | 462, 758, 2140, 2199, 2278, 2415, 2444 |
| HpyCH4III | ACNGT | 6 cut(s) | 21, 151, 435, 2210, 2543, 2792 |
| HpyCH4IV | ACGT | 2 cut(s) | 1639, 2084 |
| HpySE526I | ACGT | 2 cut(s) | 1639, 2084 |
| HspAI | GCGC | 4 cut(s) | 101, 697, 745, 2688 |
| KpnI | GGTACC | 1 cut(s) | 410 |
| Ksp22I | TGATCA | 2 cut(s) | 415, 2215 |
| LguI | GCTCTTC | 1 cut(s) | 1612 |
| LmnI | GCTCC | 5 cut(s) | 1061, 1707, 2191, 2500, 2759 |
| LweI | GCATC | 5 cut(s) | 571, 720, 860, 2076, 2251 |
| MaeI | CTAG | 7 cut(s) | 734, 813, 996, 1146, 1485, 1647, 1847 |
| MaeII | ACGT | 2 cut(s) | 1639, 2084 |
| MaeIII | GTNAC | 5 cut(s) | 145, 376, 778, 1107, 1597 |
| MflI | RGATCY | 6 cut(s) | 29, 37, 1075, 1426, 1544, 2110 |
| MhlI | GDGCHC | 5 cut(s) | 300, 927, 1446, 1624, 1939 |
| MlyI | GAGTC | 4 cut(s) | 594, 956, 1685, 1760 |
| MmeI | TCCRAC | 4 cut(s) | 120, 1155, 1187, 2839 |
| Mph1103I | ATGCAT | 1 cut(s) | 549 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1873, 2622 |
| MslI | CAYNNNNRTG | 2 cut(s) | 716, 1736 |
| MspA1I | CMGCKG | 2 cut(s) | 659, 1781 |
| MspCI | CTTAAG | 1 cut(s) | 2128 |
| MspI | CCGG | 4 cut(s) | 82, 245, 1657, 1931 |
| MspR9I | CCNGG | 9 cut(s) | 42, 61, 496, 577, 1657, 1684, 1794, 1931, 1932 |
| Mva1269I | GAATGC | 1 cut(s) | 547 |
| MvaI | CCWGG | 6 cut(s) | 42, 61, 496, 577, 1684, 1794 |
| MvnI | CGCG | 2 cut(s) | 101, 103 |
| NciI | CCSGG | 3 cut(s) | 1657, 1931, 1932 |
| NlaIV | GGNNCC | 9 cut(s) | 408, 493, 574, 1077, 1174, 1703, 2187, 2253, 2289 |
| NmeAIII | GCCGAG | 1 cut(s) | 248 |
| NmuCI | GTSAC | 2 cut(s) | 145, 1597 |
| NsbI | TGCGCA | 1 cut(s) | 2689 |
| NsiI | ATGCAT | 1 cut(s) | 549 |
| NspI | RCATGY | 3 cut(s) | 559, 1893, 2694 |
| NspV | TTCGAA | 2 cut(s) | 2144, 2165 |
| PaeR7I | CTCGAG | 2 cut(s) | 401, 2522 |
| PagI | TCATGA | 2 cut(s) | 1857, 1915 |
| PaqCI | CACCTGC | 1 cut(s) | 166 |
| PasI | CCCWGGG | 1 cut(s) | 1683 |
| PceI | AGGCCT | 2 cut(s) | 1797, 2105 |
| PciI | ACATGT | 1 cut(s) | 1889 |
| PciSI | GCTCTTC | 1 cut(s) | 1612 |
| PctI | GAATGC | 1 cut(s) | 547 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1873, 2622 |
| PleI | GAGTC | 4 cut(s) | 593, 955, 1685, 1760 |
| PpsI | GAGTC | 4 cut(s) | 593, 955, 1685, 1760 |
| PpuMI | RGGWCCY | 1 cut(s) | 2356 |
| PscI | ACATGT | 1 cut(s) | 1889 |
| Psp124BI | GAGCTC | 2 cut(s) | 300, 1624 |
| Psp5II | RGGWCCY | 1 cut(s) | 2356 |
| Psp6I | CCWGG | 6 cut(s) | 40, 59, 494, 575, 1682, 1792 |
| PspFI | CCCAGC | 1 cut(s) | 1387 |
| PspGI | CCWGG | 6 cut(s) | 40, 59, 494, 575, 1682, 1792 |
| PspN4I | GGNNCC | 9 cut(s) | 408, 493, 574, 1077, 1174, 1703, 2187, 2253, 2289 |
| PspPI | GGNCC | 6 cut(s) | 44, 872, 1172, 2288, 2356, 2804 |
| PspPPI | RGGWCCY | 1 cut(s) | 2356 |
| PspXI | VCTCGAGB | 2 cut(s) | 401, 2522 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 115, 147, 2235, 2267 |
| PstI | CTGCAG | 1 cut(s) | 2459 |
| PstNI | CAGNNNCTG | 4 cut(s) | 424, 659, 1547, 1781 |
| PsuI | RGATCY | 6 cut(s) | 29, 37, 1075, 1426, 1544, 2110 |
| PvuII | CAGCTG | 2 cut(s) | 659, 1781 |
| RsaI | GTAC | 8 cut(s) | 133, 278, 408, 437, 485, 1058, 1698, 2079 |
| RsaNI | GTAC | 8 cut(s) | 132, 277, 407, 436, 484, 1057, 1697, 2078 |
| RseI | CAYNNNNRTG | 2 cut(s) | 716, 1736 |
| SacI | GAGCTC | 2 cut(s) | 300, 1624 |
| SapI | GCTCTTC | 1 cut(s) | 1612 |
| Sau96I | GGNCC | 6 cut(s) | 44, 872, 1172, 2288, 2356, 2804 |
| ScaI | AGTACT | 1 cut(s) | 485 |
| SchI | GAGTC | 4 cut(s) | 594, 956, 1685, 1760 |
| ScrFI | CCNGG | 9 cut(s) | 42, 61, 496, 577, 1657, 1684, 1794, 1931, 1932 |
| SduI | GDGCHC | 5 cut(s) | 300, 927, 1446, 1624, 1939 |
| SfaNI | GCATC | 5 cut(s) | 571, 720, 860, 2076, 2251 |
| SfcI | CTRYAG | 2 cut(s) | 1818, 2455 |
| Sfr274I | CTCGAG | 2 cut(s) | 401, 2522 |
| SfuI | TTCGAA | 2 cut(s) | 2144, 2165 |
| SinI | GGWCC | 5 cut(s) | 44, 872, 1172, 2356, 2804 |
| SlaI | CTCGAG | 2 cut(s) | 401, 2522 |
| SmaI | CCCGGG | 1 cut(s) | 1932 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 716, 1736 |
| SmlI | CTYRAG | 4 cut(s) | 401, 1249, 2128, 2522 |
| SmoI | CTYRAG | 4 cut(s) | 401, 1249, 2128, 2522 |
| SseBI | AGGCCT | 2 cut(s) | 1797, 2105 |
| SspMI | CTAG | 7 cut(s) | 734, 813, 996, 1146, 1485, 1647, 1847 |
| SstI | GAGCTC | 2 cut(s) | 300, 1624 |
| StuI | AGGCCT | 2 cut(s) | 1797, 2105 |
| StyD4I | CCNGG | 9 cut(s) | 40, 59, 494, 575, 1655, 1682, 1792, 1929, 1930 |
| StyI | CCWWGG | 5 cut(s) | 1355, 1376, 1508, 1646, 2352 |
| TaaI | ACNGT | 6 cut(s) | 21, 151, 435, 2210, 2543, 2792 |
| TaiI | ACGT | 2 cut(s) | 1642, 2087 |
| TaqII | GACCGA | 1 cut(s) | 2398 |
| TatI | WGTACW | 3 cut(s) | 276, 483, 2077 |
| TauI | GCSGC | 3 cut(s) | 106, 562, 688 |
| TscAI | CASTG | 8 cut(s) | 156, 217, 294, 438, 1451, 1758, 2797, 2806 |
| TseFI | GTSAC | 2 cut(s) | 145, 1597 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 1597 |
| TspGWI | ACGGA | 4 cut(s) | 778, 1053, 1074, 2381 |
| TspMI | CCCGGG | 1 cut(s) | 1930 |
| TspRI | CASTG | 8 cut(s) | 156, 217, 294, 438, 1451, 1758, 2797, 2806 |
| Vha464I | CTTAAG | 1 cut(s) | 2128 |
| VpaK11BI | GGWCC | 5 cut(s) | 44, 872, 1172, 2356, 2804 |
| XapI | RAATTY | 5 cut(s) | 1156, 1393, 1402, 1494, 1527 |
| XbaI | TCTAGA | 2 cut(s) | 733, 995 |
| XceI | RCATGY | 3 cut(s) | 559, 1893, 2694 |
| XhoI | CTCGAG | 2 cut(s) | 401, 2522 |
| XmaI | CCCGGG | 1 cut(s) | 1930 |
| XmaJI | CCTAGG | 1 cut(s) | 1646 |
| XmiI | GTMKAC | 1 cut(s) | 16 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1873, 2622 |
| XspI | CTAG | 7 cut(s) | 734, 813, 996, 1146, 1485, 1647, 1847 |
| ZrmI | AGTACT | 1 cut(s) | 485 |
| Zsp2I | ATGCAT | 1 cut(s) | 549 |