Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Forward (+)

1453010 .. 1459977

Gene Structure 6968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1016100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3090 bp

ATGGAAATGGAGAGCTCGCGTAGGCCGTTTAGCGGATCGAATGAACCAGGCTTGAAGAAACCCCGATTGGCCGAAAACCCGAATGGACGAGCTTTTGGGCAGAGACCTGGTGGGGGAGCTAATCCAGTGCTGTCAAGATTCAGAGTGAGTGATAGAGACACCGGGAGCGACGACCCGAATCGCGGGGGTGGGGGCTATGTGCCGCAGCCACTGCAGCATCAGGAGCTTGTGAGCCAGTACAAGACGGCGTTGGCGGAGCTCACCTTCAATTCAAAGCCAATTATTACCAATCTGACGATAATTGCCGGCGAGAACGTCCACGCAGCAAAGGCGGTGGCGGCAACTGTATGCAGCCACATTATTGAGGTTCCTAGCGAGCAGAAGTTACCATCACTTTATCTTTTGGACAGTATTGTAAAGAATATCGGAAGGGATTATATCAAATATTTTGCTGTCAGACTCCCTGAGGTGTTCTGCAAGGCATATAGGCAGGTTGAACCTCCTATACATCAAAGTATGCGGCATCTTTTTGGAACATGGAAAGGAGTGTTTCCTGCTCAGACACTTCAGATGATTGAGAAAGAACTTGGATTTTCTTCTACGGCAAATGGTTCATCCTCTGGAGCAGCAACATCAAGACCAGATTCGCAGTCACAGCGACAAGCACATAGCATTCATGTGAATCCCAAATATTTGGAAAGGCAACGTCTTCAGCAGCCAACTAGGAATTTGCAGCAGTCCAATGCAGATGCACTAAGCGAGCGTGTTCATGAGAAGAACATTGGTGCTGAATATGGAGAATATGAATATGGTTCTGATCTTCCCAGGAATTCAAACCCAGGAATTGGAAGAATTGGTGGGAAGATTACAGAAACACTACCCACCCAAAGAAATGGTGTTAATATCAGGCATGGACTTGCAAATTACTCGGCACCTAAATCTGCTAATGCTGATCCTCGCTTAAAGGCAGCACCAGGCATTGCAACTAGAAACGGTGGTGGGCTTTCTAGTAGCTGGAAGAATTCTGAGGAAGAGGAGTTCATGTGGGATGATATGAACTCAAGATTAACAGATCATGGCCCGTCAGATATTTCTAGTAACTCAAGAAAAGATCACTGGGCCTCTGATGATTCAGAGAGATTGGGGTTTGGAGGTCATTTTCGTAAACCAAAAAGTGTAAATGATTATGCATCAACAGCTGATCTGGATACCTCTGCTGACCTTACTGAACAGAAGGACCTATCTGCTCTTGGTCACCTGATGTCATCACCTTGGACATTGCAGGACTCTATCGGTGTTGACAGGCTGACCCCTTCTGGTACTCCTGTCATTAGTTCGGTTCACTCGGATCGTTATGCTTCAAGTTTAAGTGGGCTATCAACAAGTGGAGATTATTCTGTGGCCAGGATGGGAAGTAGAGCACAAGTAGCATCTTCTCGCATTGGAGCGTCAAGTCTCGGGTTTAGTGCAGCATCAGGGCCCACTGGAGCTTTAGGGAAACAGCAGCAACTTCAGTCTGTGAGAGCTGCATCACCATCTGGGCAGTCACTGATGCACCGGTATTCTCCCTCACCTACATCAACAGTACAACACCCTCGTCATCATTTGCAAAGTTTAGCTGAGCAAGACCTTACTGAGGACCCTTTGCCAATCCCAACTCCCAATGCTCGACTGGGTAGCAAAGCAAAATCACAGCCTCAAGATTTATCTTTGTCAATTCCTGCCATCCAATCAAGGCACAAATATGCCTCTCGACAACAACCGGACAGTATAGAGTCTGAATCTTTCGGTCACACTAAGAAGCCCCCTGTGCTACCGGTCTCCACTTTTTCAACTCCGTCAACTGTTGGAGATTCTATACCAGATCATTCAAATGTCATTGCTGCAGAAACCTCAGGACAGTTGAGCACTAGTAGTTTGTTGGCTGCCGTTATGAAGACTGGAATTTTATCTGACAAATCAATTACTGGTGGCCTACCAAATTTGAATATTCGGGACATGGGACATATTCCATCACAGCCAGGTGTTCAGTCTCCCTTTCCAAGTGGACCTCCCCCTACTCAGGTTGCACTCCCAGGGTCCAAGGTTGCCTCAGCATTTACATCAGGTCACCTTTCTGGTGATAACTCACCAGCTTCCTCAAATGTATCACAGAAGAAGGTAGGCCATCTGCCACTTCCACATAGCCAACCTCCTTCATCTCTCGAGGGCAGTGCGTCAGCAAGTTCTTCAACTGTGGTGAATAACTCCTCGGATCCAATTTCTAGCCTTTTAAGCTCCTTAGTTGCAAAGGGTTTGATATCTGCATCAAAGTCAGAGTCGCTCACTCCTGTGCCATCCCAAAAGCCAACTGAACTGCAAAACAAGAGCCTTGGTGGACCTGCCACAAGTTTAGTGTCAGTGTCTCCAGTTTCAGTTTCAGCAAGTCTTCCTGTTTCATCTCGAACTGATGATGCATCTCTCCCAGAACCTGTAGCTAAAACATCTGCTGCCTTACCACAAATTACCAAGACAGAAATAAGAAACCTCATTGGCGTTGAGTTTAAGCCAGATAAAATCCGAGAATTCCATCCAGCCGTGATTGAGGAACTTTTTAATGACCTTCCACATAAGTGTAGCATATGTGGCCTTAAGCTCAAACTTAGAGAACGGCTTGAGAGACACTTGGAATGGCATGCTTCGAAAAATCCCGAAGCCAATGGTTCAGCCATGGCATCAAGGAAGTGGTATCCAAATTTAACCAGCTGGGTTGCTGGAAAAGCAGGACCCCCTTTGGTACCTGAGGCCAACAATTCAATAGACGAGCCTAATGAGACGATTGACATTGATGAGCCCATGGTTCCCGCAGACGAAAGCCAATGTGCATGTGTTATATGTGGTGATATTTTTGAAGATTTTTATTGTCAAGAAAGGGATGAATGGATGTTCAAAGGAGCTTCGTACATGAGTATTCCATCTGGGGCCGGTGAGATGGAAACCACAGAGGAGAGTGTTTTGAAAGGTCCCATTGTGCATGTAAATTGTACGGTGGAAAGTTCACTCTCTGATTTGGGATTGCCGGGCCATGTTAAATTGGAACCGGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

1030

Amino Acids

110.14

Weight (kDa)

6.41

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	81 - 190	7.6e-13	CID domain
zf_PCFS4	PF23228	943 - 1009	1e-29	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	481, 2389
Acc65I	GGTACC	1 cut(s)	2776
AccB1I	GGYRCC	2 cut(s)	931, 2776
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccII	CGCG	2 cut(s)	19, 183
AciI	CCGC	8 cut(s)	33, 183, 203, 254, 332, 338, 520, 2844
AclWI	GGATC	5 cut(s)	43, 947, 1356, 2249, 2262
AcoI	YGGCCR	2 cut(s)	69, 1401
AcsI	RAATTY	8 cut(s)	727, 829, 1021, 1944, 1981, 2564, 2734, 3084
AcuI	CTGAAG	3 cut(s)	551, 695, 1496
AfaI	GTAC	6 cut(s)	239, 1321, 1587, 2778, 2942, 3025
AfiI	CCNNNNNNNGG	6 cut(s)	32, 113, 182, 845, 1636, 2062
AflII	CTTAAG	1 cut(s)	2630
AgeI	ACCGGT	2 cut(s)	1557, 1816
AhlI	ACTAGT	1 cut(s)	1910
AjnI	CCWGG	8 cut(s)	46, 106, 824, 838, 973, 1403, 2020, 2074
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AleI	CACNNNNGTG	2 cut(s)	2330, 2611
AloI	GAACNNNNNNTCC	2 cut(s)	1022, 1054
Alw21I	GWGCWC	4 cut(s)	17, 261, 1423, 1910
Alw26I	GTCTC	8 cut(s)	97, 150, 1460, 1825, 2037, 2409, 2653, 2807
AlwI	GGATC	5 cut(s)	43, 947, 1356, 2249, 2262
AlwNI	CAGNNNCTG	3 cut(s)	211, 1549, 2471
Ama87I	CYCGRG	2 cut(s)	1457, 2204
ApaI	GGGCCC	1 cut(s)	1482
ApoI	RAATTY	8 cut(s)	727, 829, 1021, 1944, 1981, 2564, 2734, 3084
ArsI	GACNNNNNNTTYG	2 cut(s)	2303, 2335
AsiGI	ACCGGT	2 cut(s)	1557, 1816
Asp718I	GGTACC	1 cut(s)	2776
AsuC2I	CCSGG	2 cut(s)	163, 3060
AsuII	TTCGAA	1 cut(s)	2681
AvaI	CYCGRG	2 cut(s)	1457, 2204
AvaII	GGWCC	7 cut(s)	1237, 1639, 2048, 2079, 2378, 2765, 3002
AxyI	CCTNAGG	3 cut(s)	465, 1894, 2781
BaeGI	GKGCMC	1 cut(s)	1482
BaeI	ACNNNNGTAYC	2 cut(s)	1311, 1344
BalI	TGGCCA	1 cut(s)	1403
BamHI	GGATCC	1 cut(s)	2254
BanI	GGYRCC	2 cut(s)	931, 2776
BanII	GRGCYC	4 cut(s)	17, 261, 1482, 2835
BbsI	GAAGAC	3 cut(s)	701, 1943, 2420
Bbv12I	GWGCWC	4 cut(s)	17, 261, 1423, 1910
BbvCI	CCTCAGC	1 cut(s)	2092
BceAI	ACGGC	6 cut(s)	10, 261, 618, 1913, 2561, 2666
BcgI	CGANNNNNNTGC	4 cut(s)	909, 943, 2195, 2229
BciT130I	CCWGG	8 cut(s)	48, 108, 826, 840, 975, 1405, 2022, 2076
BciVI	GTATCC	2 cut(s)	1201, 2739
BcnI	CCSGG	2 cut(s)	163, 3060
BcoDI	GTCTC	8 cut(s)	97, 150, 1460, 1825, 2037, 2409, 2653, 2807
BcuI	ACTAGT	1 cut(s)	1910
BfaI	CTAG	7 cut(s)	372, 723, 987, 1008, 1095, 1911, 2265
BfmI	CTRYAG	3 cut(s)	212, 1884, 2472
BfrI	CTTAAG	1 cut(s)	2630
BfuAI	ACCTGC	2 cut(s)	481, 2389
BfuI	GTATCC	2 cut(s)	1201, 2739
BlpI	GCTNAGC	1 cut(s)	1620
Bme18I	GGWCC	7 cut(s)	1237, 1639, 2048, 2079, 2378, 2765, 3002
BmeT110I	CYCGRG	2 cut(s)	1457, 2204
BmrI	ACTGGG	2 cut(s)	1126, 1682
BmuI	ACTGGG	2 cut(s)	1126, 1682
BpiI	GAAGAC	3 cut(s)	701, 1943, 2420
BpmI	CTGGAG	3 cut(s)	642, 1506, 2391
Bpu10I	CCTNAGC	1 cut(s)	2092
Bpu1102I	GCTNAGC	1 cut(s)	1620
Bpu14I	TTCGAA	1 cut(s)	2681
BpuEI	CTTGAG	4 cut(s)	1045, 1087, 1683, 2675
BpuMI	CCSGG	2 cut(s)	163, 3060
BsaI	GGTCTC	2 cut(s)	97, 1825
BsaWI	WCCGGW	4 cut(s)	1557, 1762, 1816, 3079
BsaXI	ACNNNNNCTCC	2 cut(s)	1028, 1058
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 113, 182, 845, 1636, 2062
Bse118I	RCCGGY	4 cut(s)	305, 1557, 1816, 2963
Bse1I	ACTGG	8 cut(s)	125, 235, 1121, 1489, 1677, 1945, 1972, 2408
Bse21I	CCTNAGG	3 cut(s)	465, 1894, 2781
Bse3DI	GCAATG	3 cut(s)	978, 1277, 1878
BseBI	CCWGG	8 cut(s)	48, 108, 826, 840, 975, 1405, 2022, 2076
BseGI	GGATG	8 cut(s)	614, 1054, 1413, 1725, 2336, 2569, 2920, 2928
BseLI	CCNNNNNNNGG	6 cut(s)	32, 113, 182, 845, 1636, 2062
BseMI	GCAATG	3 cut(s)	978, 1277, 1878
BseMII	CTCAG	9 cut(s)	456, 572, 1017, 1611, 1626, 1908, 2075, 2106, 2772
BseNI	ACTGG	8 cut(s)	125, 235, 1121, 1489, 1677, 1945, 1972, 2408
BseRI	GAGGAG	3 cut(s)	1049, 2239, 2999
BseSI	GKGCMC	1 cut(s)	1482
BseYI	CCCAGC	1 cut(s)	2745
BsgI	GTGCAG	1 cut(s)	1488
Bsh1236I	CGCG	2 cut(s)	19, 183
BshNI	GGYRCC	2 cut(s)	931, 2776
BshTI	ACCGGT	2 cut(s)	1557, 1816
BsiHKAI	GWGCWC	4 cut(s)	17, 261, 1423, 1910
BsiHKCI	CYCGRG	2 cut(s)	1457, 2204
BsiSI	CCGG	8 cut(s)	162, 306, 1558, 1763, 1817, 2964, 3059, 3080
BslFI	GGGAC	3 cut(s)	2009, 2016, 2988
BslI	CCNNNNNNNGG	6 cut(s)	32, 113, 182, 845, 1636, 2062
BsmAI	GTCTC	8 cut(s)	97, 150, 1460, 1825, 2037, 2409, 2653, 2807
BsmBI	CGTCTC	1 cut(s)	2807
BsmFI	GGGAC	3 cut(s)	2009, 2016, 2988
BsmI	GAATGC	1 cut(s)	672
Bso31I	GGTCTC	2 cut(s)	97, 1825
BsoBI	CYCGRG	2 cut(s)	1457, 2204
Bsp119I	TTCGAA	1 cut(s)	2681
Bsp120I	GGGCCC	1 cut(s)	1478
Bsp1286I	GDGCHC	6 cut(s)	17, 261, 1423, 1482, 1910, 2835
Bsp143I	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
Bsp1720I	GCTNAGC	1 cut(s)	1620
Bsp19I	CCATGG	2 cut(s)	2709, 2835
BspACI	CCGC	8 cut(s)	33, 183, 203, 254, 332, 338, 520, 2844
BspCNI	CTCAG	9 cut(s)	457, 571, 1018, 1612, 1627, 1907, 2074, 2105, 2773
BspFNI	CGCG	2 cut(s)	19, 183
BspHI	TCATGA	1 cut(s)	769
BspMAI	CTGCAG	2 cut(s)	216, 1888
BspMI	ACCTGC	2 cut(s)	481, 2389
BspPI	GGATC	5 cut(s)	43, 947, 1356, 2249, 2262
BspT104I	TTCGAA	1 cut(s)	2681
BspT107I	GGYRCC	2 cut(s)	931, 2776
BspTI	CTTAAG	1 cut(s)	2630
BspTNI	GGTCTC	2 cut(s)	97, 1825
BsrDI	GCAATG	3 cut(s)	978, 1277, 1878
BsrFI	RCCGGY	4 cut(s)	305, 1557, 1816, 2963
BsrI	ACTGG	8 cut(s)	125, 235, 1121, 1489, 1677, 1945, 1972, 2408
BssAI	RCCGGY	4 cut(s)	305, 1557, 1816, 2963
BssMI	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
BssT1I	CCWWGG	5 cut(s)	1271, 2082, 2371, 2709, 2835
Bst2UI	CCWGG	8 cut(s)	48, 108, 826, 840, 975, 1405, 2022, 2076
Bst4CI	ACNGT	9 cut(s)	346, 410, 995, 1585, 1769, 1846, 1902, 2236, 3028
Bst6I	CTCTTC	1 cut(s)	1026
BstAFI	CTTAAG	1 cut(s)	2630
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	2681
BstC8I	GCNNGC	5 cut(s)	17, 307, 377, 761, 2676
BstDSI	CCRYGG	2 cut(s)	2709, 2835
BstEII	GGTNACC	2 cut(s)	1253, 2108
BstENI	CCTNNNNNAGG	1 cut(s)	1634
BstF5I	GGATG	8 cut(s)	614, 1054, 1413, 1725, 2336, 2569, 2920, 2928
BstFNI	CGCG	2 cut(s)	19, 183
BstKTI	GATC	9 cut(s)	38, 820, 955, 1075, 1114, 1204, 1351, 1867, 2257
BstMAI	GTCTC	8 cut(s)	97, 150, 1460, 1825, 2037, 2409, 2653, 2807
BstMBI	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
BstNI	CCWGG	8 cut(s)	48, 108, 826, 840, 975, 1405, 2022, 2076
BstNSI	RCATGY	3 cut(s)	2678, 2868, 3017
BstPI	GGTNACC	2 cut(s)	1253, 2108
BstSFI	CTRYAG	3 cut(s)	212, 1884, 2472
BstSLI	GKGCMC	1 cut(s)	1482
BstUI	CGCG	2 cut(s)	19, 183
BstV2I	GAAGAC	3 cut(s)	701, 1943, 2420
BstX2I	RGATCY	1 cut(s)	2254
BstXI	CCANNNNNNTGG	2 cut(s)	694, 893
BstYI	RGATCY	1 cut(s)	2254
Bsu36I	CCTNAGG	3 cut(s)	465, 1894, 2781
BsuI	GTATCC	2 cut(s)	1201, 2739
BtgI	CCRYGG	2 cut(s)	2709, 2835
BtsCI	GGATG	8 cut(s)	614, 1054, 1413, 1725, 2336, 2569, 2920, 2928
BtsI	GCAGTG	2 cut(s)	209, 2218
BtsIMutI	CAGTG	7 cut(s)	132, 209, 1114, 1482, 1547, 2218, 2406
BveI	ACCTGC	2 cut(s)	481, 2389
Cac8I	GCNNGC	5 cut(s)	17, 307, 377, 761, 2676
CaiI	CAGNNNCTG	3 cut(s)	211, 1549, 2471
CciI	TCATGA	1 cut(s)	769
Cfr10I	RCCGGY	4 cut(s)	305, 1557, 1816, 2963
CseI	GACGC	2 cut(s)	1437, 2205
CsiI	ACCWGGT	1 cut(s)	106
Csp6I	GTAC	6 cut(s)	238, 1320, 1586, 2777, 2941, 3024
CspAI	ACCGGT	2 cut(s)	1557, 1816
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviQI	GTAC	6 cut(s)	238, 1320, 1586, 2777, 2941, 3024
DpnI	GATC	9 cut(s)	37, 819, 954, 1074, 1113, 1203, 1350, 1866, 2256
DpnII	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
EaeI	YGGCCR	2 cut(s)	69, 1401
Eam1104I	CTCTTC	1 cut(s)	1026
EarI	CTCTTC	1 cut(s)	1026
EciI	GGCGGA	1 cut(s)	269
Ecl136II	GAGCTC	2 cut(s)	15, 259
Eco130I	CCWWGG	5 cut(s)	1271, 2082, 2371, 2709, 2835
Eco24I	GRGCYC	4 cut(s)	17, 261, 1482, 2835
Eco31I	GGTCTC	2 cut(s)	97, 1825
Eco32I	GATATC	1 cut(s)	2301
Eco47I	GGWCC	7 cut(s)	1237, 1639, 2048, 2079, 2378, 2765, 3002
Eco53kI	GAGCTC	2 cut(s)	15, 259
Eco57I	CTGAAG	3 cut(s)	551, 695, 1496
Eco81I	CCTNAGG	3 cut(s)	465, 1894, 2781
Eco88I	CYCGRG	2 cut(s)	1457, 2204
Eco91I	GGTNACC	2 cut(s)	1253, 2108
EcoICRI	GAGCTC	2 cut(s)	15, 259
EcoNI	CCTNNNNNAGG	1 cut(s)	1634
EcoO109I	RGGNCCY	5 cut(s)	1237, 1478, 1639, 2765, 3002
EcoO65I	GGTNACC	2 cut(s)	1253, 2108
EcoRI	GAATTC	3 cut(s)	829, 1021, 2564
EcoRII	CCWGG	8 cut(s)	46, 106, 824, 838, 973, 1403, 2020, 2074
EcoRV	GATATC	1 cut(s)	2301
EcoT14I	CCWWGG	5 cut(s)	1271, 2082, 2371, 2709, 2835
EcoT22I	ATGCAT	2 cut(s)	1192, 2458
EcoT38I	GRGCYC	4 cut(s)	17, 261, 1482, 2835
ErhI	CCWWGG	5 cut(s)	1271, 2082, 2371, 2709, 2835
Esp3I	CGTCTC	1 cut(s)	2807
FaqI	GGGAC	3 cut(s)	2009, 2016, 2988
FauI	CCCGC	2 cut(s)	176, 2851
FauNDI	CATATG	1 cut(s)	2621
FokI	GGATG	8 cut(s)	601, 1061, 1420, 1712, 2323, 2556, 2927, 2935
FriOI	GRGCYC	4 cut(s)	17, 261, 1482, 2835
FspBI	CTAG	7 cut(s)	372, 723, 987, 1008, 1095, 1911, 2265
GsaI	CCCAGC	1 cut(s)	2749
GsuI	CTGGAG	3 cut(s)	642, 1506, 2391
HapII	CCGG	8 cut(s)	162, 306, 1558, 1763, 1817, 2964, 3059, 3080
HgaI	GACGC	2 cut(s)	1437, 2205
HincII	GTYRAC	2 cut(s)	1300, 1842
HindII	GTYRAC	2 cut(s)	1300, 1842
HpaII	CCGG	8 cut(s)	162, 306, 1558, 1763, 1817, 2964, 3059, 3080
Hpy166II	GTNNAC	8 cut(s)	319, 1166, 1300, 1342, 1842, 2048, 2378, 3038
Hpy8I	GTNNAC	8 cut(s)	319, 1166, 1300, 1342, 1842, 2048, 2378, 3038
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	7 cut(s)	274, 423, 1228, 1323, 2152, 2205, 2612
HpyCH4III	ACNGT	9 cut(s)	346, 410, 995, 1585, 1769, 1846, 1902, 2236, 3028
HpyCH4IV	ACGT	2 cut(s)	315, 706
HpySE526I	ACGT	2 cut(s)	315, 706
KpnI	GGTACC	1 cut(s)	2780
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
LmnI	GCTCC	9 cut(s)	116, 165, 223, 256, 623, 1445, 1487, 2282, 2933
MabI	ACCWGGT	1 cut(s)	106
MaeI	CTAG	7 cut(s)	372, 723, 987, 1008, 1095, 1911, 2265
MaeII	ACGT	2 cut(s)	315, 706
MaeIII	GTNAC	7 cut(s)	384, 651, 1097, 1253, 1545, 1790, 2108
MalI	GATC	9 cut(s)	37, 819, 954, 1074, 1113, 1203, 1350, 1866, 2256
MboI	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
MflI	RGATCY	1 cut(s)	2254
MhlI	GDGCHC	6 cut(s)	17, 261, 1423, 1482, 1910, 2835
MlsI	TGGCCA	1 cut(s)	1403
MluNI	TGGCCA	1 cut(s)	1403
MlyI	GAGTC	4 cut(s)	453, 1280, 1784, 2327
MmeI	TCCRAC	1 cut(s)	1828
Mox20I	TGGCCA	1 cut(s)	1403
Mph1103I	ATGCAT	2 cut(s)	1192, 2458
MroNI	GCCGGC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	1403
MslI	CAYNNNNRTG	5 cut(s)	677, 1743, 1872, 2330, 2611
Msp20I	TGGCCA	1 cut(s)	1403
MspA1I	CMGCKG	2 cut(s)	1199, 2745
MspCI	CTTAAG	1 cut(s)	2630
MspI	CCGG	8 cut(s)	162, 306, 1558, 1763, 1817, 2964, 3059, 3080
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	8 cut(s)	48, 108, 826, 840, 975, 1405, 2022, 2076
MvnI	CGCG	2 cut(s)	19, 183
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	163, 3060
NcoI	CCATGG	2 cut(s)	2709, 2835
NdeI	CATATG	1 cut(s)	2621
NdeII	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
NgoMIV	GCCGGC	1 cut(s)	305
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	5 cut(s)	651, 1253, 1545, 1790, 2108
NsiI	ATGCAT	2 cut(s)	1192, 2458
NspI	RCATGY	3 cut(s)	2678, 2868, 3017
NspV	TTCGAA	1 cut(s)	2681
OliI	CACNNNNGTG	2 cut(s)	2330, 2611
PaeI	GCATGC	1 cut(s)	2678
PaeR7I	CTCGAG	1 cut(s)	2204
PagI	TCATGA	1 cut(s)	769
PasI	CCCWGGG	1 cut(s)	2075
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	672
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	7 cut(s)	138, 178, 644, 682, 1130, 1781, 1853
PflMI	CCANNNNNTGG	1 cut(s)	845
PinAI	ACCGGT	2 cut(s)	1557, 1816
PleI	GAGTC	4 cut(s)	453, 1280, 1783, 2326
PpsI	GAGTC	4 cut(s)	453, 1280, 1783, 2326
PpuMI	RGGWCCY	4 cut(s)	1237, 1639, 2765, 3002
Psp124BI	GAGCTC	2 cut(s)	17, 261
Psp5II	RGGWCCY	4 cut(s)	1237, 1639, 2765, 3002
Psp6I	CCWGG	8 cut(s)	46, 106, 824, 838, 973, 1403, 2020, 2074
PspEI	GGTNACC	2 cut(s)	1253, 2108
PspFI	CCCAGC	1 cut(s)	2745
PspGI	CCWGG	8 cut(s)	46, 106, 824, 838, 973, 1403, 2020, 2074
PspOMI	GGGCCC	1 cut(s)	1478
PspPPI	RGGWCCY	4 cut(s)	1237, 1639, 2765, 3002
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PstI	CTGCAG	2 cut(s)	216, 1888
PstNI	CAGNNNCTG	3 cut(s)	211, 1549, 2471
PsuI	RGATCY	1 cut(s)	2254
PvuII	CAGCTG	2 cut(s)	1199, 2745
RsaI	GTAC	6 cut(s)	239, 1321, 1587, 2778, 2942, 3025
RsaNI	GTAC	6 cut(s)	238, 1320, 1586, 2777, 2941, 3024
RseI	CAYNNNNRTG	5 cut(s)	677, 1743, 1872, 2330, 2611
SacI	GAGCTC	2 cut(s)	17, 261
Sau3AI	GATC	9 cut(s)	35, 817, 952, 1072, 1111, 1201, 1348, 1864, 2254
SchI	GAGTC	4 cut(s)	453, 1280, 1784, 2327
SduI	GDGCHC	6 cut(s)	17, 261, 1423, 1482, 1910, 2835
SexAI	ACCWGGT	1 cut(s)	106
SfcI	CTRYAG	3 cut(s)	212, 1884, 2472
Sfr274I	CTCGAG	1 cut(s)	2204
SfuI	TTCGAA	1 cut(s)	2681
SinI	GGWCC	7 cut(s)	1237, 1639, 2048, 2079, 2378, 2765, 3002
SlaI	CTCGAG	1 cut(s)	2204
SmiMI	CAYNNNNRTG	5 cut(s)	677, 1743, 1872, 2330, 2611
SmlI	CTYRAG	6 cut(s)	1060, 1102, 1698, 2204, 2630, 2654
SmoI	CTYRAG	6 cut(s)	1060, 1102, 1698, 2204, 2630, 2654
SpeI	ACTAGT	1 cut(s)	1910
SphI	GCATGC	1 cut(s)	2678
SsiI	CCGC	8 cut(s)	33, 183, 203, 254, 332, 338, 520, 2844
SspI	AATATT	3 cut(s)	446, 692, 1990
SspMI	CTAG	7 cut(s)	372, 723, 987, 1008, 1095, 1911, 2265
SstI	GAGCTC	2 cut(s)	17, 261
StyI	CCWWGG	5 cut(s)	1271, 2082, 2371, 2709, 2835
TaaI	ACNGT	9 cut(s)	346, 410, 995, 1585, 1769, 1846, 1902, 2236, 3028
TaiI	ACGT	2 cut(s)	318, 709
TaqI	TCGA	6 cut(s)	38, 1669, 1753, 2205, 2443, 2681
TaqII	GACCGA	1 cut(s)	1778
TatI	WGTACW	2 cut(s)	237, 1585
TauI	GCSGC	3 cut(s)	205, 341, 523
TfiI	GAWTC	7 cut(s)	138, 178, 644, 682, 1130, 1781, 1853
TscAI	CASTG	7 cut(s)	132, 216, 1121, 1489, 1554, 2218, 2406
TseFI	GTSAC	5 cut(s)	651, 1253, 1545, 1790, 2108
Tsp45I	GTSAC	5 cut(s)	651, 1253, 1545, 1790, 2108
TspGWI	ACGGA	1 cut(s)	1827
TspRI	CASTG	7 cut(s)	132, 216, 1121, 1489, 1554, 2218, 2406
Van91I	CCANNNNNTGG	1 cut(s)	845
Vha464I	CTTAAG	1 cut(s)	2630
VpaK11BI	GGWCC	7 cut(s)	1237, 1639, 2048, 2079, 2378, 2765, 3002
XagI	CCTNNNNNAGG	1 cut(s)	1634
XapI	RAATTY	8 cut(s)	727, 829, 1021, 1944, 1981, 2564, 2734, 3084
XceI	RCATGY	3 cut(s)	2678, 2868, 3017
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1669
XhoI	CTCGAG	1 cut(s)	2204
XspI	CTAG	7 cut(s)	372, 723, 987, 1008, 1095, 1911, 2265
Zsp2I	ATGCAT	2 cut(s)	1192, 2458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.