Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Forward (+)

1227192 .. 1233333

Gene Structure 6142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3069 bp

ATGGAAATGGAGAGCTCGCGTAGGCCGTTTAGCAGATCGAATGAACCAGGCCTGAAGAAGCCCCGATTGGCCGAAAACCCGAATGGCCGAGCTTTTGGGCAGAGACCCGTTGGTGGAGCTAATCCAGTGCTGTCAAGGTTCAGAGTGAGTGATAGAAACGTGGGGAGCGATGATGCGAATCGCGGGGGTGGGGGCTATGTGCCGCAGCCACTGCAGCATCAGGAGCTTGTGAGCCAGTACAAGACGGCGTTGGCGGAGCTCACCTTCAATTCAAAGCCAATTATTACCAATTTGACGATAATTGCCGGCGAGAATGTCCACGCTGCGAAGTCGGTGGCGGCAACTGTATGCGGCAACATTATTGAGGTTCCCAGTGAGCAGAAGTTACCATCACTTTATCTTTTGGACAGTATTGTAAAGAATATTGGAAGGGATTATATCAAATATTTTGCTGCCAGACTCCCTGAGGTGTTCTGCAAGGCATATAGGCAGGTTGAACCTCCTATACATCAAAGCATGCGGCATCTTTTTGGAACATGGAAAGGAGTGTTTCCTGCTCAGACGCTTCAGATGATTGAGAAAGAACTCGGATTTTCTTCTACAGCAAATGGTTCATCCTCTGGAGCAGCAACATCAAGACCAGATTCACAGTCACAACGACCAGCACATAGCATTCATGTGAATCCCAAATATTTGGAAAGGCAACGGCTTCAGCAGCCAGCAAGGTTGCAGCGTTCCAATACAGATGCACTAAGTGCTCGTGTTCATGAGGAGAACATTGGTGCCGAATATGGAGAATGTGAATATGGTTCAGATCTTCACAGGAATTCAAACCCGGGAATGGGAAGAATTGGTGGGAAGATTACAGAAACACTGCCCACCCAAAGAAATGGTTTTAATATCAAGCATGGACTTACAAATTACTCGGCACCTAAATCTACTAATGCTGATCCTCGCTTAAAGACAGCACCAGGCATTGCAACTAGAAACAGTGGTGGCCTGTCTAGTAGCTGGAAGAATTCTGAGGAAGAGGAGTTCATGTGGGATGATATGAACTCAAGATTAACAGATCATGGCCCTCCAGATATTTCTAGTAACTCAAGAAAAGATCACTGGGCTTCTGATGATTCAGAGAAATTGGGCTTTGGAGGTCAGTTGCGTAAACCAAAAGGTGTAAATGATTATTCATCAACAGCTGATCTGGATACCTCTGCTGATCCTACTGAACAGAAAGACCTATCTGCTCTTGGTCAGCGAATGTCATCACCTTGGACATTGCAGGACTCTATCGGTGTTGACAGGCTGACCCCTTCTGGTACTCCTGTCATTAGTTCAGTTCATTCAGAGCGTTATGCTTCAAGTTTAAGTGGGCTATCGACAAGTGGAGATTCTTCTGTGGCCAGGATGGGAAGTAGAGCACAAGTAGCGTCTTCTCGAATCGGAACGTCATGTCTAGGGTTTAATGCAGCAGCAGGGCCTACTGGAGCTTTAGGGAAACAACAGCTTCAGTCTGTGAGAGCTGCATCACCATCTGAACAGTCATCGATGCACCAATATTCTCCTTCACCTACATCTGCAGTACATCCCCGTCATCACTCGCAAAGTTTAGCTGACCAAGACTTTGCTGAGGACCCTTTGCCAATTCCGACTCCCAATGTTCGATTGGGCAGCAAAGCAAAAACACAGCCTCAAGATATATCTTCGTCAATTCCTGACATCCAATCAAGTCACAAATACCCCTTTCGACAACAACCAGACAGTATAGAGTCTGAATCCTTTGGTCGCATTAAGAAGCCTCATGTGCCACAGGTCTCTACTTTTTCAACTCCCTCAACTGTTGGAGATTCTATACCAGGTCTTTCAAATGTCCTTGCTGCAGAATCCTCAGGACAGTTGAGCACAAGTAGTTTGTTGGCTGCTGTTATGAAGACTGGAATACTCTCTGACAAATCAATTACTTGTAGCCTGCCCAATTTGAATCGTCGGGACATGGGACATATTCCATCAGAGTCTGGTGTTCAGCCTCCCTTGCAAAGTGGACCCTCCCCTACCCTTGCACTCCCAGGGCCCAAGGTTGCATCAGCACCTTCATCAGGTCACCTTTCTGGTGAGAAATCGCCAGCTTCCTCAAATGTATCACAGAAGAAGGTAGCACATCTGCCAATTCCACCTAGCCAACCTCCTTCCTCTCTTGATGGCAGTGCGTCAGAAAGTTCAACTGTGGTGAATAATGCCTCAGATCCAATTTCAAACCTTTTAAGCTCCTTAGTTGCAAAGGGTTTGATATCTGCATCAAAGTCAGAGTCACCCACTCCCGTGCCATCCCAAAAGCTGACTGAACCGCACAACAAGAGCCTAGGTGCACCTGCCTCCAAATCAGTGACAGTATCTCCAGTTTCAGTTTCAGTCTCTCCAAGTCGTCCTGTTACATCCCAAACTGATGATGCATCTCTCCCAGAGCCTGTAGCTAAAACATCTGCTGCCTTACCTCAATCTACCAAGACGGAAATAAGAAACCTCATAGGCGTTGCCTTTAAGCCAGATAAAATCCGAGAATTTCATCCAGCTGTGATAGATGAACTTTTTAATGACCTTCCACATACGTGTAGCATATGTGGCCTTAGGCTCAAACTTAAAGAACGACTTGAGAGACATTTGGAATGGCATGCTTCGAAAAATCCTGAAGGTAATGGTTCAGTTATGGCATCAAGGAAGTGGTATCCAGATTTAACCAGCTGGGTTGCTGGAAGGACAGGACCCCCTTTGGTACTGGAGGCCATCAATTCAATAGACGAGCCTAACGAGATGATGGATATTGATGAGCCCATAGTTCCAGCAGACGAAAACCAATGTGTATGTGTTATATGTGGTGGTATTTTTGAAGATTTTTACTGTCAAGAGAGGGATGAATGGATGTTCAAAGGAGCTTCGTACATGAGTATTCCATCTGGGGCCAGTGAGATGGAAACCACAGAGGAGAGTGTTTTGAAAGGTCCCATTGTGCATGCAAATTGTACAGTGGAAAGTTCACTCTCTGATAGCCATGTTAAATTGGAACCGGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

1023

Amino Acids

109.61

Weight (kDa)

6.49

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	81 - 190	1.7e-12	CID domain
zf_PCFS4	PF23228	940 - 1006	6e-29	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2374
Acc36I	ACCTGC	2 cut(s)	481, 2374
AccB1I	GGYRCC	2 cut(s)	782, 928
AccII	CGCG	2 cut(s)	19, 183
AciI	CCGC	7 cut(s)	183, 203, 254, 338, 351, 520, 2342
AclWI	GGATC	3 cut(s)	944, 1211, 2234
AcoI	YGGCCR	3 cut(s)	69, 85, 1398
AcsI	RAATTY	3 cut(s)	826, 1018, 2555
AcuI	CTGAAG	5 cut(s)	74, 551, 695, 1490, 2703
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	6 cut(s)	239, 1318, 1581, 2769, 2933, 3016
AfiI	CCNNNNNNNGG	4 cut(s)	113, 841, 842, 2093
AflIII	ACRYGT	1 cut(s)	2603
AjnI	CCWGG	5 cut(s)	46, 970, 1400, 1852, 2062
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AleI	CACNNNNGTG	2 cut(s)	2315, 2602
AloI	GAACNNNNNNTCC	2 cut(s)	1019, 1051
Alw21I	GWGCWC	6 cut(s)	17, 261, 760, 1420, 1901, 2365
Alw26I	GTCTC	4 cut(s)	97, 1816, 2413, 2644
Alw44I	GTGCAC	1 cut(s)	2361
AlwI	GGATC	3 cut(s)	944, 1211, 2234
AlwNI	CAGNNNCTG	3 cut(s)	211, 2012, 2462
Ama87I	CYCGRG	1 cut(s)	835
ApaI	GGGCCC	1 cut(s)	2070
ApaLI	GTGCAC	1 cut(s)	2361
ApoI	RAATTY	3 cut(s)	826, 1018, 2555
ArsI	GACNNNNNNTTYG	4 cut(s)	1604, 1636, 2288, 2320
AspA2I	CCTAGG	1 cut(s)	2356
AspS9I	GGNCC	9 cut(s)	1076, 1475, 1630, 2039, 2066, 2067, 2756, 2952, 2993
AsuC2I	CCSGG	2 cut(s)	836, 837
AsuHPI	GGTGA	8 cut(s)	253, 1257, 1518, 1557, 2090, 2120, 2236, 2298
AsuII	TTCGAA	1 cut(s)	2672
AvaI	CYCGRG	1 cut(s)	835
AvaII	GGWCC	4 cut(s)	1630, 2039, 2756, 2993
AvrII	CCTAGG	1 cut(s)	2356
AxyI	CCTNAGG	3 cut(s)	465, 1885, 2621
BaeGI	GKGCMC	2 cut(s)	2070, 2365
BaeI	ACNNNNGTAYC	2 cut(s)	1308, 1341
BalI	TGGCCA	1 cut(s)	1400
BanI	GGYRCC	2 cut(s)	782, 928
BanII	GRGCYC	4 cut(s)	17, 261, 2070, 2826
BauI	CACGAG	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	1422, 1934
Bbv12I	GWGCWC	6 cut(s)	17, 261, 760, 1420, 1901, 2365
BbvCI	CCTCAGC	1 cut(s)	1626
BceAI	ACGGC	3 cut(s)	10, 261, 722
BciT130I	CCWGG	5 cut(s)	48, 972, 1402, 1854, 2064
BciVI	GTATCC	2 cut(s)	1198, 2730
BcnI	CCSGG	2 cut(s)	836, 837
BcoDI	GTCTC	4 cut(s)	97, 1816, 2413, 2644
BfaI	CTAG	6 cut(s)	984, 1005, 1092, 1454, 2172, 2357
BfmI	CTRYAG	5 cut(s)	212, 600, 1575, 1875, 2463
BfuAI	ACCTGC	2 cut(s)	481, 2374
BfuI	GTATCC	2 cut(s)	1198, 2730
BglII	AGATCT	1 cut(s)	814
BlnI	CCTAGG	1 cut(s)	2356
Bme1390I	CCNGG	7 cut(s)	48, 836, 837, 972, 1402, 1854, 2064
Bme18I	GGWCC	4 cut(s)	1630, 2039, 2756, 2993
BmeT110I	CYCGRG	1 cut(s)	835
BmgT120I	GGNCC	9 cut(s)	1076, 1475, 1630, 2039, 2066, 2067, 2756, 2952, 2993
BmrFI	CCNGG	7 cut(s)	48, 836, 837, 972, 1402, 1854, 2064
BmrI	ACTGGG	2 cut(s)	366, 1123
BmuI	ACTGGG	2 cut(s)	366, 1123
BpiI	GAAGAC	2 cut(s)	1422, 1934
BpmI	CTGGAG	5 cut(s)	642, 1065, 1503, 2376, 2792
Bpu10I	CCTNAGC	1 cut(s)	1626
Bpu14I	TTCGAA	1 cut(s)	2672
BpuEI	CTTGAG	4 cut(s)	1042, 1084, 1674, 2666
BpuMI	CCSGG	2 cut(s)	836, 837
Bsa29I	ATCGAT	1 cut(s)	1544
BsaAI	YACGTR	1 cut(s)	2604
BsaBI	GATNNNNATC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	97, 1816
BsaJI	CCNNGG	6 cut(s)	835, 1268, 2062, 2063, 2070, 2356
BsaWI	WCCGGW	1 cut(s)	3058
BsaXI	ACNNNNNCTCC	4 cut(s)	1025, 1055, 2374, 2404
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 841, 842, 2093
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	9 cut(s)	125, 235, 372, 1118, 1486, 1936, 2393, 2775, 2955
Bse21I	CCTNAGG	3 cut(s)	465, 1885, 2621
Bse3DI	GCAATG	2 cut(s)	975, 1274
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	5 cut(s)	48, 972, 1402, 1854, 2064
BseCI	ATCGAT	1 cut(s)	1544
BseDI	CCNNGG	6 cut(s)	835, 1268, 2062, 2063, 2070, 2356
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	113, 841, 842, 2093
BseMI	GCAATG	2 cut(s)	975, 1274
BseMII	CTCAG	6 cut(s)	456, 572, 1014, 1617, 1899, 2250
BseNI	ACTGG	9 cut(s)	125, 235, 372, 1118, 1486, 1936, 2393, 2775, 2955
BseRI	GAGGAG	3 cut(s)	785, 1046, 2990
BseSI	GKGCMC	2 cut(s)	2070, 2365
BseYI	CCCAGC	1 cut(s)	2736
Bsh1236I	CGCG	2 cut(s)	19, 183
BshNI	GGYRCC	2 cut(s)	782, 928
BshVI	ATCGAT	1 cut(s)	1544
BsiHKAI	GWGCWC	6 cut(s)	17, 261, 760, 1420, 1901, 2365
BsiHKCI	CYCGRG	1 cut(s)	835
BsiSI	CCGG	3 cut(s)	306, 836, 3059
BslFI	GGGAC	3 cut(s)	2000, 2007, 2979
BslI	CCNNNNNNNGG	4 cut(s)	113, 841, 842, 2093
BsmAI	GTCTC	4 cut(s)	97, 1816, 2413, 2644
BsmFI	GGGAC	3 cut(s)	2000, 2007, 2979
BsmI	GAATGC	1 cut(s)	672
Bso31I	GGTCTC	2 cut(s)	97, 1816
BsoBI	CYCGRG	1 cut(s)	835
Bsp119I	TTCGAA	1 cut(s)	2672
Bsp120I	GGGCCC	1 cut(s)	2066
Bsp1286I	GDGCHC	8 cut(s)	17, 261, 760, 1420, 1901, 2070, 2365, 2826
Bsp1407I	TGTACA	1 cut(s)	3014
Bsp143I	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
BspACI	CCGC	7 cut(s)	183, 203, 254, 338, 351, 520, 2342
BspCNI	CTCAG	6 cut(s)	457, 571, 1015, 1618, 1898, 2249
BspDI	ATCGAT	1 cut(s)	1544
BspFNI	CGCG	2 cut(s)	19, 183
BspHI	TCATGA	1 cut(s)	766
BspMAI	CTGCAG	3 cut(s)	216, 1579, 1879
BspMI	ACCTGC	2 cut(s)	481, 2374
BspPI	GGATC	3 cut(s)	944, 1211, 2234
BspT104I	TTCGAA	1 cut(s)	2672
BspT107I	GGYRCC	2 cut(s)	782, 928
BspTNI	GGTCTC	2 cut(s)	97, 1816
BsrDI	GCAATG	2 cut(s)	975, 1274
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	3014
BsrI	ACTGG	9 cut(s)	125, 235, 372, 1118, 1486, 1936, 2393, 2775, 2955
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	6 cut(s)	835, 1268, 2062, 2063, 2070, 2356
BssMI	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
BssSI	CACGAG	1 cut(s)	759
BssT1I	CCWWGG	3 cut(s)	1268, 2070, 2356
Bst2BI	CACGAG	1 cut(s)	759
Bst2UI	CCWGG	5 cut(s)	48, 972, 1402, 1854, 2064
Bst6I	CTCTTC	1 cut(s)	1023
BstAPI	GCANNNNNTGC	2 cut(s)	211, 755
BstAUI	TGTACA	1 cut(s)	3014
BstBAI	YACGTR	1 cut(s)	2604
BstBI	TTCGAA	1 cut(s)	2672
BstC8I	GCNNGC	8 cut(s)	17, 307, 518, 720, 1967, 2121, 2667, 3006
BstEII	GGTNACC	1 cut(s)	2096
BstENI	CCTNNNNNAGG	1 cut(s)	2091
BstFNI	CGCG	2 cut(s)	19, 183
BstKTI	GATC	8 cut(s)	38, 817, 952, 1072, 1111, 1201, 1219, 2242
BstMAI	GTCTC	4 cut(s)	97, 1816, 2413, 2644
BstMBI	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
BstMWI	GCNNNNNNNGC	9 cut(s)	211, 214, 223, 715, 755, 1424, 1801, 2029, 2616
BstNI	CCWGG	5 cut(s)	48, 972, 1402, 1854, 2064
BstNSI	RCATGY	3 cut(s)	520, 2669, 3008
BstPI	GGTNACC	1 cut(s)	2096
BstSCI	CCNGG	7 cut(s)	46, 834, 835, 970, 1400, 1852, 2062
BstSFI	CTRYAG	5 cut(s)	212, 600, 1575, 1875, 2463
BstSLI	GKGCMC	2 cut(s)	2070, 2365
BstUI	CGCG	2 cut(s)	19, 183
BstV2I	GAAGAC	2 cut(s)	1422, 1934
BstX2I	RGATCY	2 cut(s)	814, 2239
BstXI	CCANNNNNNTGG	3 cut(s)	694, 890, 2962
BstYI	RGATCY	2 cut(s)	814, 2239
Bsu15I	ATCGAT	1 cut(s)	1544
Bsu36I	CCTNAGG	3 cut(s)	465, 1885, 2621
BsuI	GTATCC	2 cut(s)	1198, 2730
BsuTUI	ATCGAT	1 cut(s)	1544
BtgZI	GCGATG	1 cut(s)	183
BtsI	GCAGTG	3 cut(s)	209, 872, 2206
BveI	ACCTGC	2 cut(s)	481, 2374
Cac8I	GCNNGC	8 cut(s)	17, 307, 518, 720, 1967, 2121, 2667, 3006
CaiI	CAGNNNCTG	3 cut(s)	211, 2012, 2462
CciI	TCATGA	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	9 cut(s)	1076, 1475, 1630, 2039, 2066, 2067, 2756, 2952, 2993
Cfr9I	CCCGGG	1 cut(s)	835
ClaI	ATCGAT	1 cut(s)	1544
CseI	GACGC	3 cut(s)	571, 1416, 2193
CsiI	ACCWGGT	1 cut(s)	1852
Csp6I	GTAC	6 cut(s)	238, 1317, 1580, 2768, 2932, 3015
CviQI	GTAC	6 cut(s)	238, 1317, 1580, 2768, 2932, 3015
DpnI	GATC	8 cut(s)	37, 816, 951, 1071, 1110, 1200, 1218, 2241
DpnII	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
DraIII	CACNNNGTG	1 cut(s)	755
EaeI	YGGCCR	3 cut(s)	69, 85, 1398
Eam1104I	CTCTTC	1 cut(s)	1023
EarI	CTCTTC	1 cut(s)	1023
EciI	GGCGGA	1 cut(s)	269
Ecl136II	GAGCTC	2 cut(s)	15, 259
Eco130I	CCWWGG	3 cut(s)	1268, 2070, 2356
Eco147I	AGGCCT	1 cut(s)	51
Eco24I	GRGCYC	4 cut(s)	17, 261, 2070, 2826
Eco31I	GGTCTC	2 cut(s)	97, 1816
Eco32I	GATATC	1 cut(s)	2286
Eco47I	GGWCC	4 cut(s)	1630, 2039, 2756, 2993
Eco53kI	GAGCTC	2 cut(s)	15, 259
Eco57I	CTGAAG	5 cut(s)	74, 551, 695, 1490, 2703
Eco81I	CCTNAGG	3 cut(s)	465, 1885, 2621
Eco88I	CYCGRG	1 cut(s)	835
Eco91I	GGTNACC	1 cut(s)	2096
EcoICRI	GAGCTC	2 cut(s)	15, 259
EcoNI	CCTNNNNNAGG	1 cut(s)	2091
EcoO109I	RGGNCCY	5 cut(s)	1475, 1630, 2066, 2756, 2993
EcoO65I	GGTNACC	1 cut(s)	2096
EcoRI	GAATTC	2 cut(s)	826, 1018
EcoRII	CCWGG	5 cut(s)	46, 970, 1400, 1852, 2062
EcoRV	GATATC	1 cut(s)	2286
EcoT14I	CCWWGG	3 cut(s)	1268, 2070, 2356
EcoT22I	ATGCAT	1 cut(s)	2449
EcoT38I	GRGCYC	4 cut(s)	17, 261, 2070, 2826
ErhI	CCWWGG	3 cut(s)	1268, 2070, 2356
FalI	AAGNNNNNCTT	2 cut(s)	2628, 2660
FaqI	GGGAC	3 cut(s)	2000, 2007, 2979
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	2612
FriOI	GRGCYC	4 cut(s)	17, 261, 2070, 2826
FspBI	CTAG	6 cut(s)	984, 1005, 1092, 1454, 2172, 2357
GsaI	CCCAGC	1 cut(s)	2740
GsuI	CTGGAG	5 cut(s)	642, 1065, 1503, 2376, 2792
HapII	CCGG	3 cut(s)	306, 836, 3059
HgaI	GACGC	3 cut(s)	571, 1416, 2193
HincII	GTYRAC	1 cut(s)	1297
HindII	GTYRAC	1 cut(s)	1297
HpaII	CCGG	3 cut(s)	306, 836, 3059
HphI	GGTGA	8 cut(s)	253, 1257, 1518, 1557, 2090, 2120, 2236, 2298
Hpy166II	GTNNAC	6 cut(s)	319, 1163, 1297, 2039, 2363, 3029
Hpy8I	GTNNAC	6 cut(s)	319, 1163, 1297, 2039, 2363, 3029
Hpy99I	CGWCG	1 cut(s)	1986
HpyCH4IV	ACGT	3 cut(s)	159, 1445, 2603
HpyF10VI	GCNNNNNNNGC	9 cut(s)	211, 214, 223, 715, 755, 1424, 1801, 2029, 2616
HpySE526I	ACGT	3 cut(s)	159, 1445, 2603
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
LmnI	GCTCC	8 cut(s)	116, 165, 223, 256, 623, 1484, 2267, 2924
MabI	ACCWGGT	1 cut(s)	1852
MaeI	CTAG	6 cut(s)	984, 1005, 1092, 1454, 2172, 2357
MaeII	ACGT	3 cut(s)	159, 1445, 2603
MaeIII	GTNAC	8 cut(s)	384, 651, 1094, 1727, 2096, 2304, 2380, 2425
MalI	GATC	8 cut(s)	37, 816, 951, 1071, 1110, 1200, 1218, 2241
MboI	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
MflI	RGATCY	2 cut(s)	814, 2239
MhlI	GDGCHC	8 cut(s)	17, 261, 760, 1420, 1901, 2070, 2365, 2826
MlsI	TGGCCA	1 cut(s)	1400
MluNI	TGGCCA	1 cut(s)	1400
MlyI	GAGTC	6 cut(s)	453, 1277, 1642, 1775, 2018, 2312
MmeI	TCCRAC	2 cut(s)	1670, 1819
Mox20I	TGGCCA	1 cut(s)	1400
Mph1103I	ATGCAT	1 cut(s)	2449
MroNI	GCCGGC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	1400
MslI	CAYNNNNRTG	3 cut(s)	677, 2315, 2602
Msp20I	TGGCCA	1 cut(s)	1400
MspA1I	CMGCKG	3 cut(s)	1196, 2567, 2736
MspI	CCGG	3 cut(s)	306, 836, 3059
MspR9I	CCNGG	7 cut(s)	48, 836, 837, 972, 1402, 1854, 2064
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	5 cut(s)	48, 972, 1402, 1854, 2064
MvnI	CGCG	2 cut(s)	19, 183
MwoI	GCNNNNNNNGC	9 cut(s)	211, 214, 223, 715, 755, 1424, 1801, 2029, 2616
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	836, 837
NdeI	CATATG	1 cut(s)	2612
NdeII	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
NgoMIV	GCCGGC	1 cut(s)	305
NmeAIII	GCCGAG	2 cut(s)	113, 905
NmuCI	GTSAC	5 cut(s)	651, 1727, 2096, 2304, 2380
NsiI	ATGCAT	1 cut(s)	2449
NspI	RCATGY	3 cut(s)	520, 2669, 3008
NspV	TTCGAA	1 cut(s)	2672
OliI	CACNNNNGTG	2 cut(s)	2315, 2602
PaeI	GCATGC	3 cut(s)	520, 2669, 3008
PagI	TCATGA	1 cut(s)	766
PaqCI	CACCTGC	1 cut(s)	2374
PasI	CCCWGGG	1 cut(s)	2063
PceI	AGGCCT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 165, 2799
PctI	GAATGC	1 cut(s)	672
PdiI	GCCGGC	1 cut(s)	307
PleI	GAGTC	6 cut(s)	453, 1277, 1642, 1774, 2017, 2311
PpsI	GAGTC	6 cut(s)	453, 1277, 1642, 1774, 2017, 2311
Ppu21I	YACGTR	1 cut(s)	2604
PpuMI	RGGWCCY	3 cut(s)	1630, 2756, 2993
Psp124BI	GAGCTC	2 cut(s)	17, 261
Psp5II	RGGWCCY	3 cut(s)	1630, 2756, 2993
Psp6I	CCWGG	5 cut(s)	46, 970, 1400, 1852, 2062
PspEI	GGTNACC	1 cut(s)	2096
PspFI	CCCAGC	1 cut(s)	2736
PspGI	CCWGG	5 cut(s)	46, 970, 1400, 1852, 2062
PspOMI	GGGCCC	1 cut(s)	2066
PspPI	GGNCC	9 cut(s)	1076, 1475, 1630, 2039, 2066, 2067, 2756, 2952, 2993
PspPPI	RGGWCCY	3 cut(s)	1630, 2756, 2993
PsrI	GAACNNNNNNTAC	2 cut(s)	489, 521
PstI	CTGCAG	3 cut(s)	216, 1579, 1879
PstNI	CAGNNNCTG	3 cut(s)	211, 2012, 2462
PsuI	RGATCY	2 cut(s)	814, 2239
PvuII	CAGCTG	3 cut(s)	1196, 2567, 2736
RsaI	GTAC	6 cut(s)	239, 1318, 1581, 2769, 2933, 3016
RsaNI	GTAC	6 cut(s)	238, 1317, 1580, 2768, 2932, 3015
RseI	CAYNNNNRTG	3 cut(s)	677, 2315, 2602
SacI	GAGCTC	2 cut(s)	17, 261
Sau3AI	GATC	8 cut(s)	35, 814, 949, 1069, 1108, 1198, 1216, 2239
Sau96I	GGNCC	9 cut(s)	1076, 1475, 1630, 2039, 2066, 2067, 2756, 2952, 2993
SchI	GAGTC	6 cut(s)	453, 1277, 1642, 1775, 2018, 2312
ScrFI	CCNGG	7 cut(s)	48, 836, 837, 972, 1402, 1854, 2064
SduI	GDGCHC	8 cut(s)	17, 261, 760, 1420, 1901, 2070, 2365, 2826
SexAI	ACCWGGT	1 cut(s)	1852
SfcI	CTRYAG	5 cut(s)	212, 600, 1575, 1875, 2463
SfuI	TTCGAA	1 cut(s)	2672
SinI	GGWCC	4 cut(s)	1630, 2039, 2756, 2993
SmaI	CCCGGG	1 cut(s)	837
SmiMI	CAYNNNNRTG	3 cut(s)	677, 2315, 2602
SmlI	CTYRAG	4 cut(s)	1057, 1099, 1689, 2645
SmoI	CTYRAG	4 cut(s)	1057, 1099, 1689, 2645
SphI	GCATGC	3 cut(s)	520, 2669, 3008
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	7 cut(s)	183, 203, 254, 338, 351, 520, 2342
SspI	AATATT	4 cut(s)	424, 446, 692, 1556
SspMI	CTAG	6 cut(s)	984, 1005, 1092, 1454, 2172, 2357
SstI	GAGCTC	2 cut(s)	17, 261
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	7 cut(s)	46, 834, 835, 970, 1400, 1852, 2062
StyI	CCWWGG	3 cut(s)	1268, 2070, 2356
TaiI	ACGT	3 cut(s)	162, 1448, 2606
TaqI	TCGA	7 cut(s)	38, 1376, 1435, 1544, 1660, 1744, 2672
TatI	WGTACW	3 cut(s)	237, 1579, 3014
TauI	GCSGC	4 cut(s)	205, 341, 354, 523
TseFI	GTSAC	5 cut(s)	651, 1727, 2096, 2304, 2380
Tsp45I	GTSAC	5 cut(s)	651, 1727, 2096, 2304, 2380
TspGWI	ACGGA	1 cut(s)	2519
TspMI	CCCGGG	1 cut(s)	835
VneI	GTGCAC	1 cut(s)	2361
VpaK11BI	GGWCC	4 cut(s)	1630, 2039, 2756, 2993
XagI	CCTNNNNNAGG	1 cut(s)	2091
XapI	RAATTY	3 cut(s)	826, 1018, 2555
XceI	RCATGY	3 cut(s)	520, 2669, 3008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1660
XmaI	CCCGGG	1 cut(s)	835
XmaJI	CCTAGG	1 cut(s)	2356
XspI	CTAG	6 cut(s)	984, 1005, 1092, 1454, 2172, 2357
Zsp2I	ATGCAT	1 cut(s)	2449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.