Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Reverse (-)

31864690 .. 31870908

Gene Structure 6219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3339 bp

ATGGATATGGAGAGCTCGCGTAGGCCGTTTGGCAGATCGAACGAACCAGGGTTGAAGAAGGCGAGATTGACCGACGACCAAGGTGTTTTGAATCCGAATCTGAACGGCCGAGGCTTCGGACAAAGGCCCGGCGGAGCTAATCCGGCGCTTCAGAGGTTCAGAGTGAGTGATAGAGAGTCGGTGGAGGGCAATGACCTTCGCGGCGGCGGAGCCTATGTGCCGCAGCCATTGCAGCACCAGGAGCTTGTGAGCCAGTACCGGACGGCGCTGGCGGAGCTGACGTTCAATTCGAAGCCAATCATCACCAATTTGACCATAATCGCTGGGGAGAACCTCAACGCTGCGAAGGCCGTCACTGCCACTATATGCGCCAACATTATTGAGGTTCCTAGCGAGCAGAAGTTACCATCGCTTTATCTTTTGGACAGTATTGTAAAGAATATTGGAAGGGATTACATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATATAGACAGGTTGAACCTCCTATACATCAAAGCATGCGTCATCTTTTTGGAACTTGGAAAGGTGTCTTCCCTGCTCAGACACTTCAGATGATTGAGAAAGAACTTGGGTTTGGTACTACAGCAAATGGTTCGTCCTCTGGACTTACAACATCTAGACCAGACTCACAGTCACAACGTCCAGCACATAGCATTCATGTGAACCCCAAGTATTTGGAAAGGCAGCGTCTTCAGCAACCAACCAGGACAAAAGGGATGGCTAGTGATTTAGATGGGACTATGACAAACTCGATTGATGATTTAGACAGGCCGGACAGAGTAGCAAGTATCAGTGCTGGACGATCGTGGGTTGATCCTCCTGTTAAAATGCCTAATATTCAGCGTTCAACTAGAGATGCACTAAGTGAGCGTTTTCATGAGAAGAACGTTGGTGGCGAATATGATGACTTTGATTATGATTCTGATCTTCCAAGGAGTTCAACCTTGGGCATTGGACGATCTGGTGGGAATATTATCGAGCAAGGACATGATAAACCTTGGTATGGAGGTGGAAGCAGTGTTGCCGAAACAATTTCCAGCCAAAGAAATGGTTTTAACAAGAAGCATGGATTAAATTACTCAGCACCTAAATCTGTAAATGCTGATCCTCGTTTACAGACACCACAAGCCATTGCAAATAGAAACAGGGGTGGGTTGTCTAGTAGTTGGAAGAATTCTGAGGAAGAGGAATACATGTGGGATGATGTGAACTCAAGATCAACAGATCACTTAACCCCTGATCTTTCTAGTAATTCAAGAAAAGAGCGCTGGGTTTCTGATGATTCAGAGAAATTGGGGTTTGGAGGTGGCTCTCGTAAACTGAAAAGAGTAAATGATCTGGACTTGGCTGCTGATATCGGTGATCAGAAAGACTTAGCTCCTCTTGGGCACCGTATGCCATCACCTTGGTCATTGCAAGAGTCACATGTTGTGGATCGGCTGACCTCTCCTGGTGCTCCTGTGATTAGTTCAGTTCATTCAGAGCGTTATGTTTCAAGTTTAAGTGGGTTATCGACAAGTGGAGACTCTTCTGTGGCGAGATTGGGAAATAGAGCACAGATGATGTCTTCTCGTATTGGGGCCTCAAGCTTTGGGTTGCCAACAAATGCTGCAACAGGGTCTAATGGAGCTGTAGGGAAACAGCAGCAGTCTCTGAAAGCTGCATCACCATCTGGACATTTGCTGATGCACCAGCATTCTCCCTCACCTACATCAAAAATACAGCATCCCCGTAATTATTTGGCTGAGCAAGACCCTGCTCATGCTCCATCCCTTCCTCCTGATTTAAAAGTATCTCAAATTTTGGGAAAATCGGACTTAGGGTTGCATAGCCAGTATACTGAGGACTCTTTGCCTATTCCAACGTCCAATGTTCGATTGGGTGGCATGGCGAAATCACAGCCTCAAGATTTGAAGGCTTTGTCTTCCTCAGTGGCTGCCATCCAATCAAGGCACCACTATCCCTTCCGACAACAACAAGACAGTACAGAGCCTGAATCCTTGGATCAGACTCAGAAGCCCCATGTACCTCACGTTGCTACTTCGGTAATGCCCTCAACAGTTAGAAATTCTGTATCAGATCTTTCTAATCTCCTTGCTGCAGAAACTTCAGGACAGTCAAGCACAAGTAGTTTGTTGGCTGCTGTTTTGAAGACCGGAATTCTCTCTAATAAATCAATTACTGGTAGCCTACCCAATTTGAATTTTGGTGACAAGGAAAAAATGCCACCGGAGTCAGGTGGTCCGCCCCCCTTGCCAATTGGACGGCCGCCGACCAAAGTTGCACTTCCAGGGTCCAAAGTTGCAGCAGCACCACCTTCATTAGGTCATCCTTCCCGTGATAACTCGCCGACCACCTCAAGTAGTCTGCAGAAGGTTGCACATCCACCTCTTCCGCCTGGCCAACCACCTTTGTCTCTAGAGGGTAGCTCAACAGCAAAAGATCCAAATGTGGTGAAAAATGCCAAGGATCCAATATCAAACCTTTTGAGCTCTTTAGTTGCCAAGGGGTTGATATCTGCATCAAAGTCGGAGTCACCTACTCTTCTGCCATCTCAAAAGCCAATAGAGGTGCAAAGCCAGAACCTATCCACGACTACCACCAGTACTGTCTCTCCAGTTTCAGCGTCATCAAAAGTTCCTGTTTCATCTGAAATGGATGATGCGTCTCTCACAGAACAGGTGGCTAAACCCTCTGATGCCTTGGCTCAATCTACTAAGACGGAAAAAAGAAACCTAATAGGATTTGAGTTTAAGCCAGATAAAATCCGAGAATTACATCCATCTGTCATCGATGAGCTTTTTGATGACCTTCCACATAAATGTAGCATATGTGGCCTCAGGCTCAAACTTAAAGAACGTTTTGATAGGCACTTGGAATGGCATACTTTGAAAAGTCCCGAAGCAGATGGTTCCATTAAGGCATCAAGGGGGTGGTATGCAAATTCAACCAACTGGGTTACTGGAAAGGCTGGAAGTTCTTCTGAACTTGACTCCAACAATTCAAACGACATGACTGGCAAGACAGTGATCAGTAATGAGCCCATGGTTCCGGCTGACGAAAGCCAATGTGCATGTGTTATATGTGGTAATACGTTTGAAGACTTCTATTGTCAAGAAAGTGATGACTGGATGTTCAAAGGAGCCGTGTATATGACCGTTCCATCTGGGGATGGTGAGTTTGGAACTGCGGAGGGGAGCGTTCTGAAGGGTCCCATTGTGCATGCAAATTGTATGGATGAAAATTCACTCGAGGATTTGGGACTGGCTGCTACCCGAATTAAATTGGAAAAGGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

1113

Amino Acids

119.97

Weight (kDa)

6.77

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	88 - 196	1.3e-12	CID domain
zf_PCFS4	PF23228	1025 - 1093	1.1e-30	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1425, 1989
AccI	GTMKAC	1 cut(s)	1874
AccII	CGCG	2 cut(s)	19, 201
AclI	AACGTT	2 cut(s)	924, 2896
AclWI	GGATC	7 cut(s)	845, 1136, 1479, 2049, 2474, 2501, 2514
AcoI	YGGCCR	3 cut(s)	106, 2303, 2437
AcsI	RAATTY	7 cut(s)	1210, 1836, 2104, 2196, 2239, 2980, 3280
AcuI	CTGAAG	5 cut(s)	134, 569, 713, 2130, 3263
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	5 cut(s)	257, 616, 2023, 2064, 2644
AfeI	AGCGCT	1 cut(s)	1304
AfiI	CCNNNNNNNGG	3 cut(s)	1040, 2273, 2360
AflIII	ACRYGT	2 cut(s)	1230, 1462
AhdI	GACNNNNNGTC	1 cut(s)	667
AjnI	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
Alw21I	GWGCWC	4 cut(s)	17, 1495, 1594, 2531
Alw26I	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
AlwI	GGATC	7 cut(s)	845, 1136, 1479, 2049, 2474, 2501, 2514
AlwNI	CAGNNNCTG	3 cut(s)	1690, 1973, 2030
Ama87I	CYCGRG	1 cut(s)	3287
Aor51HI	AGCGCT	1 cut(s)	1304
AoxI	GGCC	9 cut(s)	23, 106, 125, 348, 806, 1617, 2303, 2437, 2872
ApoI	RAATTY	7 cut(s)	1210, 1836, 2104, 2196, 2239, 2980, 3280
ArsI	GACNNNNNNTTYG	8 cut(s)	271, 303, 523, 555, 617, 649, 2555, 2587
Asp700I	GAANNNNTTC	1 cut(s)	3016
AspLEI	GCGC	4 cut(s)	148, 268, 371, 1305
AspS9I	GGNCC	5 cut(s)	126, 1617, 2279, 2331, 3248
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	9 cut(s)	295, 1409, 1431, 1695, 1734, 2258, 2503, 2565, 3224
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	3287
AvaII	GGWCC	3 cut(s)	2279, 2331, 3248
AxyI	CCTNAGG	2 cut(s)	483, 2876
BaeGI	GKGCMC	1 cut(s)	1428
BalI	TGGCCA	1 cut(s)	2439
BamHI	GGATCC	1 cut(s)	2506
BanI	GGYRCC	2 cut(s)	1425, 1989
BanII	GRGCYC	3 cut(s)	17, 2531, 3081
BbsI	GAAGAC	6 cut(s)	559, 719, 1596, 1953, 2195, 3144
Bbv12I	GWGCWC	4 cut(s)	17, 1495, 1594, 2531
BceAI	ACGGC	6 cut(s)	10, 121, 279, 335, 2318, 3167
BcgI	CGANNNNNNTGC	4 cut(s)	612, 646, 2547, 2581
BciT130I	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
BclI	TGATCA	2 cut(s)	1399, 3066
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
BfaI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
BfmI	CTRYAG	4 cut(s)	618, 1668, 2136, 2405
BfoI	RGCGCY	3 cut(s)	149, 269, 1306
BglII	AGATCT	1 cut(s)	2116
BlpI	GCTNAGC	1 cut(s)	1782
BmcAI	AGTACT	1 cut(s)	2644
Bme1390I	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
Bme18I	GGWCC	3 cut(s)	2279, 2331, 3248
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmeT110I	CYCGRG	1 cut(s)	3287
BmgT120I	GGNCC	5 cut(s)	126, 1617, 2279, 2331, 3248
BmrFI	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
BmrI	ACTGGG	1 cut(s)	3001
BmsI	GCATC	8 cut(s)	883, 1709, 1713, 1771, 2567, 2689, 2725, 2969
BmuI	ACTGGG	1 cut(s)	3001
BpiI	GAAGAC	6 cut(s)	559, 719, 1596, 1953, 2195, 3144
BplI	GAGNNNNNCTC	2 cut(s)	2450, 2482
BpmI	CTGGAG	1 cut(s)	2637
Bpu1102I	GCTNAGC	1 cut(s)	1782
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	4 cut(s)	1234, 1606, 1926, 2380
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	2829
BsaBI	GATNNNNATC	1 cut(s)	960
BsaWI	WCCGGW	3 cut(s)	258, 2192, 2266
BsaXI	ACNNNNNCTCC	6 cut(s)	201, 231, 266, 296, 2635, 2665
Bsc4I	CCNNNNNNNGG	3 cut(s)	1040, 2273, 2360
Bse21I	CCTNAGG	2 cut(s)	483, 2876
Bse3DI	GCAATG	4 cut(s)	196, 227, 1167, 1448
Bse8I	GATNNNNATC	1 cut(s)	960
BseBI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
BseCI	ATCGAT	1 cut(s)	2829
BseJI	GATNNNNATC	1 cut(s)	960
BseLI	CCNNNNNNNGG	3 cut(s)	1040, 2273, 2360
BseMI	GCAATG	4 cut(s)	196, 227, 1167, 1448
BseMII	CTCAG	9 cut(s)	474, 590, 1131, 1206, 1773, 1869, 1980, 2063, 2890
BseRI	GAGGAG	1 cut(s)	1407
BseSI	GKGCMC	1 cut(s)	1428
BseX3I	CGGCCG	2 cut(s)	106, 2303
BseYI	CCCAGC	2 cut(s)	323, 1305
Bsh1236I	CGCG	2 cut(s)	19, 201
Bsh1285I	CGRYCG	3 cut(s)	109, 842, 2306
BshFI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BshNI	GGYRCC	2 cut(s)	1425, 1989
BshVI	ATCGAT	1 cut(s)	2829
BsiEI	CGRYCG	3 cut(s)	109, 842, 2306
BsiHKAI	GWGCWC	4 cut(s)	17, 1495, 1594, 2531
BsiHKCI	CYCGRG	1 cut(s)	3287
BsiSI	CCGG	7 cut(s)	129, 143, 259, 809, 2193, 2267, 3089
BslFI	GGGAC	4 cut(s)	787, 2919, 3234, 3312
BslI	CCNNNNNNNGG	3 cut(s)	1040, 2273, 2360
BsmAI	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
BsmBI	CGTCTC	1 cut(s)	2709
BsmFI	GGGAC	4 cut(s)	787, 2919, 3234, 3312
BsmI	GAATGC	2 cut(s)	690, 1732
BsnI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BsoBI	CYCGRG	1 cut(s)	3287
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	6 cut(s)	17, 1428, 1495, 1594, 2531, 3081
Bsp1720I	GCTNAGC	1 cut(s)	1782
Bsp19I	CCATGG	1 cut(s)	3081
BspANI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BspCNI	CTCAG	9 cut(s)	475, 589, 1130, 1207, 1774, 1870, 1979, 2062, 2889
BspDI	ATCGAT	1 cut(s)	2829
BspFNI	CGCG	2 cut(s)	19, 201
BspHI	TCATGA	1 cut(s)	913
BspMAI	CTGCAG	2 cut(s)	2140, 2409
BspPI	GGATC	7 cut(s)	845, 1136, 1479, 2049, 2474, 2501, 2514
BspT104I	TTCGAA	1 cut(s)	290
BspT107I	GGYRCC	2 cut(s)	1425, 1989
BsrDI	GCAATG	4 cut(s)	196, 227, 1167, 1448
BssNAI	GTATAC	1 cut(s)	1875
Bst1107I	GTATAC	1 cut(s)	1875
Bst2UI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
Bst4CI	ACNGT	9 cut(s)	428, 669, 1430, 2021, 2098, 2154, 2647, 3064, 3196
Bst6I	CTCTTC	4 cut(s)	1215, 1570, 2433, 2586
BstAPI	GCANNNNNTGC	2 cut(s)	229, 1432
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	5 cut(s)	17, 270, 395, 536, 3261
BstDSI	CCRYGG	1 cut(s)	3081
BstENI	CCTNNNNNAGG	1 cut(s)	2358
BstFNI	CGCG	2 cut(s)	19, 201
BstH2I	RGCGCY	3 cut(s)	149, 269, 1306
BstHHI	GCGC	4 cut(s)	148, 268, 371, 1305
BstMAI	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
BstMCI	CGRYCG	3 cut(s)	109, 842, 2306
BstNI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
BstNSI	RCATGY	5 cut(s)	538, 1234, 1466, 3114, 3263
BstSCI	CCNGG	7 cut(s)	46, 127, 237, 740, 1486, 2326, 2434
BstSFI	CTRYAG	4 cut(s)	618, 1668, 2136, 2405
BstSLI	GKGCMC	1 cut(s)	1428
BstUI	CGCG	2 cut(s)	19, 201
BstV2I	GAAGAC	6 cut(s)	559, 719, 1596, 1953, 2195, 3144
BstX2I	RGATCY	3 cut(s)	2116, 2479, 2506
BstXI	CCANNNNNNTGG	3 cut(s)	712, 1085, 1443
BstYI	RGATCY	3 cut(s)	2116, 2479, 2506
BstZ17I	GTATAC	1 cut(s)	1875
BstZI	CGGCCG	2 cut(s)	106, 2303
Bsu15I	ATCGAT	1 cut(s)	2829
Bsu36I	CCTNAGG	2 cut(s)	483, 2876
BsuRI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BsuTUI	ATCGAT	1 cut(s)	2829
BtgI	CCRYGG	1 cut(s)	3081
BtgZI	GCGATG	1 cut(s)	393
BtsI	GCAGTG	2 cut(s)	354, 1060
BtsIMutI	CAGTG	5 cut(s)	354, 835, 1060, 1974, 3069
Cac8I	GCNNGC	5 cut(s)	17, 270, 395, 536, 3261
CaiI	CAGNNNCTG	3 cut(s)	1690, 1973, 2030
CciI	TCATGA	1 cut(s)	913
CfoI	GCGC	4 cut(s)	148, 268, 371, 1305
Cfr13I	GGNCC	5 cut(s)	126, 1617, 2279, 2331, 3248
ClaI	ATCGAT	1 cut(s)	2829
CseI	GACGC	4 cut(s)	527, 713, 2652, 2691
Csp6I	GTAC	5 cut(s)	256, 615, 2022, 2063, 2643
CviQI	GTAC	5 cut(s)	256, 615, 2022, 2063, 2643
DraI	TTTAAA	1 cut(s)	1824
DraIII	CACNNNGTG	1 cut(s)	902
DriI	GACNNNNNGTC	1 cut(s)	667
EaeI	YGGCCR	3 cut(s)	106, 2303, 2437
EagI	CGGCCG	2 cut(s)	106, 2303
Eam1104I	CTCTTC	4 cut(s)	1215, 1570, 2433, 2586
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	4 cut(s)	1215, 1570, 2433, 2586
EciI	GGCGGA	5 cut(s)	147, 222, 287, 2271, 2421
Ecl136II	GAGCTC	2 cut(s)	15, 2529
EclXI	CGGCCG	2 cut(s)	106, 2303
Eco24I	GRGCYC	3 cut(s)	17, 2531, 3081
Eco32I	GATATC	2 cut(s)	1393, 2553
Eco47I	GGWCC	3 cut(s)	2279, 2331, 3248
Eco47III	AGCGCT	1 cut(s)	1304
Eco52I	CGGCCG	2 cut(s)	106, 2303
Eco53kI	GAGCTC	2 cut(s)	15, 2529
Eco57I	CTGAAG	5 cut(s)	134, 569, 713, 2130, 3263
Eco81I	CCTNAGG	2 cut(s)	483, 2876
Eco88I	CYCGRG	1 cut(s)	3287
EcoICRI	GAGCTC	2 cut(s)	15, 2529
EcoNI	CCTNNNNNAGG	1 cut(s)	2358
EcoO109I	RGGNCCY	2 cut(s)	1617, 3248
EcoRI	GAATTC	2 cut(s)	1210, 2196
EcoRII	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
EcoRV	GATATC	2 cut(s)	1393, 2553
EcoT38I	GRGCYC	3 cut(s)	17, 2531, 3081
Esp3I	CGTCTC	1 cut(s)	2709
FalI	AAGNNNNNCTT	2 cut(s)	2307, 2339
FaqI	GGGAC	4 cut(s)	787, 2919, 3234, 3312
FauNDI	CATATG	1 cut(s)	2867
FbaI	TGATCA	2 cut(s)	1399, 3066
FblI	GTMKAC	1 cut(s)	1874
FriOI	GRGCYC	3 cut(s)	17, 2531, 3081
FspBI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
GlaI	GCGC	4 cut(s)	147, 267, 370, 1304
GsaI	CCCAGC	2 cut(s)	327, 1309
GsuI	CTGGAG	1 cut(s)	2637
HaeII	RGCGCY	3 cut(s)	149, 269, 1306
HaeIII	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
HapII	CCGG	7 cut(s)	129, 143, 259, 809, 2193, 2267, 3089
HgaI	GACGC	4 cut(s)	527, 713, 2652, 2691
HhaI	GCGC	4 cut(s)	148, 268, 371, 1305
Hin6I	GCGC	4 cut(s)	146, 266, 369, 1303
HinP1I	GCGC	4 cut(s)	146, 266, 369, 1303
HindIII	AAGCTT	1 cut(s)	1624
HpaII	CCGG	7 cut(s)	129, 143, 259, 809, 2193, 2267, 3089
HphI	GGTGA	9 cut(s)	295, 1409, 1431, 1695, 1734, 2258, 2503, 2565, 3224
Hpy166II	GTNNAC	5 cut(s)	700, 1151, 1246, 1355, 1875
Hpy8I	GTNNAC	5 cut(s)	700, 1151, 1246, 1355, 1875
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	9 cut(s)	428, 669, 1430, 2021, 2098, 2154, 2647, 3064, 3196
HpyCH4IV	ACGT	7 cut(s)	281, 676, 924, 1901, 2070, 2896, 3131
HpySE526I	ACGT	7 cut(s)	281, 676, 924, 1901, 2070, 2896, 3131
HspAI	GCGC	4 cut(s)	146, 266, 369, 1303
KflI	GGGWCCC	1 cut(s)	3248
Ksp22I	TGATCA	2 cut(s)	1399, 3066
LweI	GCATC	8 cut(s)	883, 1709, 1713, 1771, 2567, 2689, 2725, 2969
MaeI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
MaeII	ACGT	7 cut(s)	281, 676, 924, 1901, 2070, 2896, 3131
MaeIII	GTNAC	7 cut(s)	352, 402, 669, 1458, 2246, 2571, 2995
MfeI	CAATTG	1 cut(s)	2295
MflI	RGATCY	3 cut(s)	2116, 2479, 2506
MhlI	GDGCHC	6 cut(s)	17, 1428, 1495, 1594, 2531, 3081
MlsI	TGGCCA	1 cut(s)	2439
MluNI	TGGCCA	1 cut(s)	2439
MlyI	GAGTC	9 cut(s)	185, 656, 1466, 1556, 1877, 2041, 2279, 2579, 3023
MmeI	TCCRAC	5 cut(s)	1184, 1922, 2029, 2547, 3057
Mox20I	TGGCCA	1 cut(s)	2439
MroXI	GAANNNNTTC	1 cut(s)	3016
MscI	TGGCCA	1 cut(s)	2439
MslI	CAYNNNNRTG	2 cut(s)	695, 2857
Msp20I	TGGCCA	1 cut(s)	2439
MspI	CCGG	7 cut(s)	129, 143, 259, 809, 2193, 2267, 3089
MspR9I	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
MunI	CAATTG	1 cut(s)	2295
Mva1269I	GAATGC	2 cut(s)	690, 1732
MvaI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
MvnI	CGCG	2 cut(s)	19, 201
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	3081
NdeI	CATATG	1 cut(s)	2867
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	5 cut(s)	352, 669, 1458, 2246, 2571
NspI	RCATGY	5 cut(s)	538, 1234, 1466, 3114, 3263
NspV	TTCGAA	1 cut(s)	290
PaeI	GCATGC	2 cut(s)	538, 3263
PaeR7I	CTCGAG	1 cut(s)	3287
PagI	TCATGA	1 cut(s)	913
PciI	ACATGT	2 cut(s)	1230, 1462
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 287, 930
PctI	GAATGC	2 cut(s)	690, 1732
PdmI	GAANNNNTTC	1 cut(s)	3016
PfeI	GAWTC	5 cut(s)	91, 97, 956, 1319, 2033
Ple19I	CGATCG	1 cut(s)	842
PleI	GAGTC	9 cut(s)	184, 656, 1465, 1556, 1877, 2041, 2278, 2578, 3023
PpsI	GAGTC	9 cut(s)	184, 656, 1465, 1556, 1877, 2041, 2278, 2578, 3023
PpuMI	RGGWCCY	1 cut(s)	3248
PscI	ACATGT	2 cut(s)	1230, 1462
Psp124BI	GAGCTC	2 cut(s)	17, 2531
Psp1406I	AACGTT	2 cut(s)	924, 2896
Psp5II	RGGWCCY	1 cut(s)	3248
Psp6I	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
PspFI	CCCAGC	2 cut(s)	323, 1305
PspGI	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
PspPI	GGNCC	5 cut(s)	126, 1617, 2279, 2331, 3248
PspPPI	RGGWCCY	1 cut(s)	3248
PspXI	VCTCGAGB	1 cut(s)	3287
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PstI	CTGCAG	2 cut(s)	2140, 2409
PstNI	CAGNNNCTG	3 cut(s)	1690, 1973, 2030
PsuI	RGATCY	3 cut(s)	2116, 2479, 2506
PvuI	CGATCG	1 cut(s)	842
RsaI	GTAC	5 cut(s)	257, 616, 2023, 2064, 2644
RsaNI	GTAC	5 cut(s)	256, 615, 2022, 2063, 2643
RseI	CAYNNNNRTG	2 cut(s)	695, 2857
SacI	GAGCTC	2 cut(s)	17, 2531
Sau96I	GGNCC	5 cut(s)	126, 1617, 2279, 2331, 3248
ScaI	AGTACT	1 cut(s)	2644
SchI	GAGTC	9 cut(s)	185, 656, 1466, 1556, 1877, 2041, 2279, 2579, 3023
ScrFI	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
SduI	GDGCHC	6 cut(s)	17, 1428, 1495, 1594, 2531, 3081
SfaNI	GCATC	8 cut(s)	883, 1709, 1713, 1771, 2567, 2689, 2725, 2969
SfcI	CTRYAG	4 cut(s)	618, 1668, 2136, 2405
Sfr274I	CTCGAG	1 cut(s)	3287
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	3 cut(s)	2279, 2331, 3248
SlaI	CTCGAG	1 cut(s)	3287
SmiMI	CAYNNNNRTG	2 cut(s)	695, 2857
SmlI	CTYRAG	5 cut(s)	1249, 1621, 1941, 2395, 3287
SmoI	CTYRAG	5 cut(s)	1249, 1621, 1941, 2395, 3287
SphI	GCATGC	2 cut(s)	538, 3263
SspI	AATATT	3 cut(s)	442, 874, 1009
SspMI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
SstI	GAGCTC	2 cut(s)	17, 2531
StyD4I	CCNGG	7 cut(s)	46, 127, 237, 740, 1486, 2326, 2434
TaaI	ACNGT	9 cut(s)	428, 669, 1430, 2021, 2098, 2154, 2647, 3064, 3196
TaiI	ACGT	7 cut(s)	284, 679, 927, 1904, 2073, 2899, 3134
TaqI	TCGA	8 cut(s)	38, 290, 788, 1014, 1550, 1912, 2829, 3288
TaqII	GACCGA	1 cut(s)	86
TatI	WGTACW	2 cut(s)	2021, 2642
TauI	GCSGC	4 cut(s)	204, 207, 223, 2308
TfiI	GAWTC	5 cut(s)	91, 97, 956, 1319, 2033
TscAI	CASTG	5 cut(s)	361, 835, 1060, 1974, 3069
TseFI	GTSAC	5 cut(s)	352, 669, 1458, 2246, 2571
Tsp45I	GTSAC	5 cut(s)	352, 669, 1458, 2246, 2571
TspDTI	ATGAA	6 cut(s)	683, 902, 1502, 2346, 2673, 3291
TspGWI	ACGGA	1 cut(s)	2774
TspRI	CASTG	5 cut(s)	361, 835, 1060, 1974, 3069
VpaK11BI	GGWCC	3 cut(s)	2279, 2331, 3248
XagI	CCTNNNNNAGG	1 cut(s)	2358
XapI	RAATTY	7 cut(s)	1210, 1836, 2104, 2196, 2239, 2980, 3280
XbaI	TCTAGA	2 cut(s)	653, 2455
XceI	RCATGY	5 cut(s)	538, 1234, 1466, 3114, 3263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1912
XhoI	CTCGAG	1 cut(s)	3287
XmiI	GTMKAC	1 cut(s)	1874
XmnI	GAANNNNTTC	1 cut(s)	3016
XspI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
ZrmI	AGTACT	1 cut(s)	2644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.