Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Forward (+)

17751150 .. 17760097

Gene Structure 8948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG198500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGAAGACAAAAGGGATGGCTAGTGATTTAGATGGGACTATGACAAACTCGATTGATGATTTAGACAGGCCGGACAGAGTAGCAAGTATCAGTGCTGGACGATCGTGGGTTGATCCTCCTGTTAAAATGCCTAATATTCAGCGTTCAACTAGAGATGCACTAAGTGAGCGTTTTCATGAGAAGAACGTTGGTGGCGAATATGACGACTTTGATTATGATTCTGATCTTCGAAGGAGTTCAACCTTGGGCATTGGACGATCTGGTGGGAATATTATCGAGCAAGGACATGATAAACCTTGGTATGGAGGTGGAAGCAGTGTTGCCGAAACAATTTCCAGCCAAAGAAATGGTTTTAACAAGAAGCATGGATTAAATTACTCAGCACCTAAATCATTAAATGCTGATCCTCGTTTACAGACACCACAAGCCATTGCAAATAGAAACAGGGGTGGGTTGTCTAGTAGTTGGAAGAATTCTGAGGAAGAGGAATACATGTGGGATGATGTGAACTCAAGATCAACAGATCACATAACCCCTGATCTTTCTAGTAATTCAAGAAAAGAGCGCTGGATTTCTGATGATTCAGAGAAATTGGGGTTTGTTGGTGGCTCTCGTAAACTGAAAAGAGTAAATGATTTGGACTTGGCTGCTGATATCGGTGATCAGAAAGATTTAGCTGCTCTCGGGCACCGTATGCCATCACCTTGGTCATTGCAAGAGTCACATGTTGTGGATCGGCTGACCTCTCCTGGTGCTCCTGTCATTAGTTCAGTTCATTCAGAGCGTTATGTTTCAAGTTTAAGTGGGTTATCGACAAGTGGAGACTCTTCTGTGGCAAGATTGGGAAATAGAGCACAGATGATGTCTTCTCGTATTGGGGCCTCAAGCTTTGGGTTGCCAACAAATGCTGCAACAGGGTCTAATGGAGCTGTAGGGAAACAGCAGCAGTCTCTGAGAGCTGCATCACCATCTGGACAGTTGCTGATGCACCAGCATTCTCCCTCACCTACATCAAAAATACAGCATCCCCGTAATTATTTGGCTGAGCAAGACCCTGCTCATGCTCCATCCCTTCCTCCTGATTTAAAAGTATCTGAAATTTTGGGAAAATCGGACTTAGGGTTGCATAGCCAGTATACTGAGGACTCTTTGCCTATTCCAACGTCCAATGTTCGATTAGGTGGCATGGCGAAATCACAGGCTCAAGATTTGAAGGCTTTGTCTTCCTCAGTGGCTGCCATCCAATCAAGGCACCACTATCCCTTCCGACAACAACAAGACAGTACAGAGCCTGAATCCTTGGATCAGACTCAGAAGCCCCATGTACCTCACGTTGCTACTTCTATAATGCCCTCAACAGTTAGAAATTCTGTATCAGATCTTTCTAATCTCCTTGCTGCAGAAACTTCAGGACAGTCAAGCACAAGTAGTTTGTTGGCTGCTGTTTTGAAGACCGGAATTCTCTCTAATAAATCAATTACTGGTAGCCTGCCCAATTTGAATTTTGGTGACAAGGAAAAAATGCCACCAGAGTCAGGTGGTCCGCCCCCCTTGCCAATTGGACGGCCGCCTACCAAAGTTGCACTTCCAGGGTCCAAAGTTGCAGCAGCAGCACCTTCATTAGGTCATCCTTCCCGTGAGAACTCGCCGACCACCTCAAGTACTCTGCAGAAGGTTGCACATCCACCTCTTCCACCTGGCCAACCACCTTTGTCTCTAGAGGGTAGCTCAACAGCAAAAGATCCAAATGTGGTGAAAAATGCCAAGGATCCAATATCAAACCTTTTGAGCTCTTTAGTTGCCAAGGGGTTGATATCTGCATCAAAGTCAGAGTCACCTACTCTTCTGCCATCTCAAAAGCCGATAGAGGTGCAAAGCCAGAACCTATCCACGACTACCACCACTACTGTCTCTCCAGTTTCAGCATCATCAAAAGTTCCTGTTTCATCTGAAATGGATGATGTGTCTCTCACAGAACAGGTGGCTAAACCCTCTGATGCCTTGGCTCAATCTACTAAGACAGAAAAAAGAAACCTAATAGGATTTGAGTTTAAGCCAGATAAAATCCGAGAATTACATCCATCTGTCATCGATGAGCTTTTTGAGGACCTTCCACATAAATGTAGCATATGTGGCCTCAGGCTCAAACTTAAAGAACGTCTTGATAGGCACTTGGAATGGCATACTTTGAAAACTCCCGAAGCAGATGGTTCCATTACGGCATCAAGGGGGTGGTATGCAAATTCAACCAACTGGGTTACTGGAAAGGCAGGAAGTTCTTCTGAACTTGACTCCAACAATTCAAACGACATGACTGTCAAGACAGTGATCAGTAATGAGCCCATGGTTCCAGCTGACGAAAGCCAATGTGCGTGTGTTATATGTGGTAATACGTTTGAAGACTTCTATTGTCAAGAAAGTGATGACTGGATGTTCAAAGGAGCTGTGTATATGACTGTTCCATCTGGGGATGGTGAGTTTGGAACTGCAGAGGGGAGCGTTCTGAAGGGTCCCATTGTGCATGCAAATTGTATGGATGAAAATTCACTTGAGGATTTGGGACTGGTTGCTACCCGAATTAAATTGGAAAAGGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

866

Amino Acids

92.9

Weight (kDa)

6.0

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	779 - 847	8.3e-31	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2315
AccB1I	GGYRCC	2 cut(s)	687, 1251
AccI	GTMKAC	1 cut(s)	1136
AciI	CCGC	2 cut(s)	1544, 1568
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	7 cut(s)	107, 398, 741, 1311, 1736, 1763, 1776
AcoI	YGGCCR	2 cut(s)	1565, 1699
AcsI	RAATTY	7 cut(s)	472, 1098, 1366, 1458, 1501, 2242, 2542
AcuI	CTGAAG	2 cut(s)	1392, 2525
AdeI	CACNNNGTG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	1285, 1326, 1663
AfeI	AGCGCT	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	302, 1535, 1622
AflIII	ACRYGT	2 cut(s)	492, 724
AjnI	CCWGG	3 cut(s)	748, 1588, 1696
AluBI	AGCT	9 cut(s)	677, 888, 929, 959, 1728, 1791, 2098, 2354, 2444
AluI	AGCT	9 cut(s)	677, 888, 929, 959, 1728, 1791, 2098, 2354, 2444
Alw21I	GWGCWC	3 cut(s)	757, 856, 1793
Alw26I	GTCTC	5 cut(s)	816, 954, 1719, 1915, 1971
AlwI	GGATC	7 cut(s)	107, 398, 741, 1311, 1736, 1763, 1776
AlwNI	CAGNNNCTG	4 cut(s)	952, 982, 1235, 1292
Ama87I	CYCGRG	1 cut(s)	683
Aor51HI	AGCGCT	1 cut(s)	566
AoxI	GGCC	5 cut(s)	68, 879, 1565, 1699, 2134
ApoI	RAATTY	7 cut(s)	472, 1098, 1366, 1458, 1501, 2242, 2542
ArsI	GACNNNNNNTTYG	2 cut(s)	1817, 1849
Asp700I	GAANNNNTTC	2 cut(s)	235, 2278
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	5 cut(s)	879, 1541, 1593, 2107, 2510
AsuHPI	GGTGA	8 cut(s)	671, 693, 957, 996, 1520, 1765, 1827, 2486
AsuII	TTCGAA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	4 cut(s)	1541, 1593, 2107, 2510
AxyI	CCTNAGG	1 cut(s)	2138
BaeGI	GKGCMC	1 cut(s)	690
BalI	TGGCCA	1 cut(s)	1701
BamHI	GGATCC	1 cut(s)	1768
BanI	GGYRCC	2 cut(s)	687, 1251
BanII	GRGCYC	2 cut(s)	1793, 2343
BbsI	GAAGAC	5 cut(s)	11, 858, 1215, 1457, 2406
Bbv12I	GWGCWC	3 cut(s)	757, 856, 1793
BceAI	ACGGC	2 cut(s)	1580, 2235
BcgI	CGANNNNNNTGC	2 cut(s)	1852, 1886
BciT130I	CCWGG	3 cut(s)	750, 1590, 1698
BclI	TGATCA	2 cut(s)	661, 2328
BcoDI	GTCTC	5 cut(s)	816, 954, 1719, 1915, 1971
BfaI	CTAG	5 cut(s)	21, 150, 459, 546, 1718
BfmI	CTRYAG	4 cut(s)	930, 1398, 1667, 2487
BfoI	RGCGCY	1 cut(s)	568
BglII	AGATCT	1 cut(s)	1378
BlpI	GCTNAGC	1 cut(s)	1044
BmcAI	AGTACT	1 cut(s)	1663
Bme1390I	CCNGG	3 cut(s)	750, 1590, 1698
Bme18I	GGWCC	4 cut(s)	1541, 1593, 2107, 2510
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	5 cut(s)	879, 1541, 1593, 2107, 2510
BmiI	GGNNCC	9 cut(s)	689, 880, 1253, 1594, 1770, 2212, 2349, 2511, 2512
BmrFI	CCNGG	3 cut(s)	750, 1590, 1698
BmrI	ACTGGG	1 cut(s)	2263
BmsI	GCATC	8 cut(s)	145, 971, 975, 1033, 1829, 1934, 1987, 2231
BmuI	ACTGGG	1 cut(s)	2263
BpiI	GAAGAC	5 cut(s)	11, 858, 1215, 1457, 2406
BplI	GAGNNNNNCTC	2 cut(s)	1712, 1744
BpmI	CTGGAG	1 cut(s)	1899
Bpu1102I	GCTNAGC	1 cut(s)	1044
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	5 cut(s)	496, 868, 1188, 1642, 2570
Bsa29I	ATCGAT	1 cut(s)	2091
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	9 cut(s)	243, 296, 704, 1299, 1589, 1764, 1803, 2001, 2343
BsaWI	WCCGGW	1 cut(s)	1454
BsaXI	ACNNNNNCTCC	2 cut(s)	1897, 1927
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 1535, 1622
Bse1I	ACTGG	7 cut(s)	1132, 1486, 1916, 2258, 2266, 2432, 2568
Bse21I	CCTNAGG	1 cut(s)	2138
Bse3DI	GCAATG	2 cut(s)	429, 710
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	3 cut(s)	750, 1590, 1698
BseCI	ATCGAT	1 cut(s)	2091
BseDI	CCNNGG	9 cut(s)	243, 296, 704, 1299, 1589, 1764, 1803, 2001, 2343
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	302, 1535, 1622
BseMI	GCAATG	2 cut(s)	429, 710
BseMII	CTCAG	8 cut(s)	393, 468, 944, 1035, 1131, 1242, 1325, 2152
BseNI	ACTGG	7 cut(s)	1132, 1486, 1916, 2258, 2266, 2432, 2568
BseSI	GKGCMC	1 cut(s)	690
BseX3I	CGGCCG	1 cut(s)	1565
Bsh1285I	CGRYCG	2 cut(s)	104, 1568
BshFI	GGCC	5 cut(s)	70, 881, 1567, 1701, 2136
BshNI	GGYRCC	2 cut(s)	687, 1251
BshVI	ATCGAT	1 cut(s)	2091
BsiEI	CGRYCG	2 cut(s)	104, 1568
BsiHKAI	GWGCWC	3 cut(s)	757, 856, 1793
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	2 cut(s)	71, 1455
BslFI	GGGAC	3 cut(s)	49, 2496, 2574
BslI	CCNNNNNNNGG	3 cut(s)	302, 1535, 1622
BsmAI	GTCTC	5 cut(s)	816, 954, 1719, 1915, 1971
BsmFI	GGGAC	3 cut(s)	49, 2496, 2574
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	5 cut(s)	70, 881, 1567, 1701, 2136
BsoBI	CYCGRG	1 cut(s)	683
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	5 cut(s)	690, 757, 856, 1793, 2343
Bsp1720I	GCTNAGC	1 cut(s)	1044
Bsp19I	CCATGG	1 cut(s)	2343
BspACI	CCGC	2 cut(s)	1544, 1568
BspANI	GGCC	5 cut(s)	70, 881, 1567, 1701, 2136
BspCNI	CTCAG	8 cut(s)	392, 469, 945, 1036, 1132, 1241, 1324, 2151
BspDI	ATCGAT	1 cut(s)	2091
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	9 cut(s)	689, 880, 1253, 1594, 1770, 2212, 2349, 2511, 2512
BspMAI	CTGCAG	3 cut(s)	1402, 1671, 2491
BspPI	GGATC	7 cut(s)	107, 398, 741, 1311, 1736, 1763, 1776
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	2 cut(s)	687, 1251
BsrDI	GCAATG	2 cut(s)	429, 710
BsrI	ACTGG	7 cut(s)	1132, 1486, 1916, 2258, 2266, 2432, 2568
BssECI	CCNNGG	9 cut(s)	243, 296, 704, 1299, 1589, 1764, 1803, 2001, 2343
BssNAI	GTATAC	1 cut(s)	1137
BssT1I	CCWWGG	8 cut(s)	243, 296, 704, 1299, 1764, 1803, 2001, 2343
Bst1107I	GTATAC	1 cut(s)	1137
Bst2UI	CCWGG	3 cut(s)	750, 1590, 1698
Bst4CI	ACNGT	9 cut(s)	692, 978, 1283, 1360, 1416, 1909, 2317, 2326, 2458
Bst6I	CTCTTC	4 cut(s)	477, 832, 1695, 1848
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	1490, 2523
BstDSI	CCRYGG	1 cut(s)	2343
BstENI	CCTNNNNNAGG	1 cut(s)	1620
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstMAI	GTCTC	5 cut(s)	816, 954, 1719, 1915, 1971
BstMCI	CGRYCG	2 cut(s)	104, 1568
BstMWI	GCNNNNNNNGC	4 cut(s)	694, 1552, 1610, 2133
BstNI	CCWGG	3 cut(s)	750, 1590, 1698
BstNSI	RCATGY	3 cut(s)	496, 728, 2525
BstSCI	CCNGG	3 cut(s)	748, 1588, 1696
BstSFI	CTRYAG	4 cut(s)	930, 1398, 1667, 2487
BstSLI	GKGCMC	1 cut(s)	690
BstV2I	GAAGAC	5 cut(s)	11, 858, 1215, 1457, 2406
BstX2I	RGATCY	3 cut(s)	1378, 1741, 1768
BstXI	CCANNNNNNTGG	2 cut(s)	347, 705
BstYI	RGATCY	3 cut(s)	1378, 1741, 1768
BstZ17I	GTATAC	1 cut(s)	1137
BstZI	CGGCCG	1 cut(s)	1565
Bsu15I	ATCGAT	1 cut(s)	2091
Bsu36I	CCTNAGG	1 cut(s)	2138
BsuRI	GGCC	5 cut(s)	70, 881, 1567, 1701, 2136
BsuTUI	ATCGAT	1 cut(s)	2091
BtgI	CCRYGG	1 cut(s)	2343
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	4 cut(s)	97, 322, 1236, 2331
Cac8I	GCNNGC	2 cut(s)	1490, 2523
CaiI	CAGNNNCTG	4 cut(s)	952, 982, 1235, 1292
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	5 cut(s)	879, 1541, 1593, 2107, 2510
ClaI	ATCGAT	1 cut(s)	2091
Csp6I	GTAC	3 cut(s)	1284, 1325, 1662
CviQI	GTAC	3 cut(s)	1284, 1325, 1662
DraI	TTTAAA	1 cut(s)	1086
DraIII	CACNNNGTG	1 cut(s)	164
DrdI	GACNNNNNNGTC	1 cut(s)	2315
DseDI	GACNNNNNNGTC	1 cut(s)	2315
EaeI	YGGCCR	2 cut(s)	1565, 1699
EagI	CGGCCG	1 cut(s)	1565
Eam1104I	CTCTTC	4 cut(s)	477, 832, 1695, 1848
EarI	CTCTTC	4 cut(s)	477, 832, 1695, 1848
EciI	GGCGGA	1 cut(s)	1533
Ecl136II	GAGCTC	1 cut(s)	1791
EclXI	CGGCCG	1 cut(s)	1565
Eco130I	CCWWGG	8 cut(s)	243, 296, 704, 1299, 1764, 1803, 2001, 2343
Eco24I	GRGCYC	2 cut(s)	1793, 2343
Eco32I	GATATC	2 cut(s)	655, 1815
Eco47I	GGWCC	4 cut(s)	1541, 1593, 2107, 2510
Eco47III	AGCGCT	1 cut(s)	566
Eco52I	CGGCCG	1 cut(s)	1565
Eco53kI	GAGCTC	1 cut(s)	1791
Eco57I	CTGAAG	2 cut(s)	1392, 2525
Eco81I	CCTNAGG	1 cut(s)	2138
Eco88I	CYCGRG	1 cut(s)	683
EcoICRI	GAGCTC	1 cut(s)	1791
EcoNI	CCTNNNNNAGG	1 cut(s)	1620
EcoO109I	RGGNCCY	3 cut(s)	879, 2107, 2510
EcoRI	GAATTC	2 cut(s)	472, 1458
EcoRII	CCWGG	3 cut(s)	748, 1588, 1696
EcoRV	GATATC	2 cut(s)	655, 1815
EcoT14I	CCWWGG	8 cut(s)	243, 296, 704, 1299, 1764, 1803, 2001, 2343
EcoT38I	GRGCYC	2 cut(s)	1793, 2343
ErhI	CCWWGG	8 cut(s)	243, 296, 704, 1299, 1764, 1803, 2001, 2343
FalI	AAGNNNNNCTT	4 cut(s)	1569, 1601, 2145, 2177
FaqI	GGGAC	3 cut(s)	49, 2496, 2574
FauNDI	CATATG	1 cut(s)	2129
FbaI	TGATCA	2 cut(s)	661, 2328
FblI	GTMKAC	1 cut(s)	1136
FriOI	GRGCYC	2 cut(s)	1793, 2343
FspBI	CTAG	5 cut(s)	21, 150, 459, 546, 1718
GlaI	GCGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	1899
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	5 cut(s)	70, 881, 1567, 1701, 2136
HapII	CCGG	2 cut(s)	71, 1455
HhaI	GCGC	1 cut(s)	567
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	886
HpaII	CCGG	2 cut(s)	71, 1455
HphI	GGTGA	8 cut(s)	671, 693, 957, 996, 1520, 1765, 1827, 2486
Hpy166II	GTNNAC	4 cut(s)	413, 508, 617, 1137
Hpy8I	GTNNAC	4 cut(s)	413, 508, 617, 1137
HpyAV	CCTTC	9 cut(s)	225, 1082, 1207, 1273, 1626, 1641, 1666, 2120, 2500
HpyCH4III	ACNGT	9 cut(s)	692, 978, 1283, 1360, 1416, 1909, 2317, 2326, 2458
HpyCH4IV	ACGT	5 cut(s)	186, 1163, 1332, 2158, 2393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	694, 1552, 1610, 2133
HpySE526I	ACGT	5 cut(s)	186, 1163, 1332, 2158, 2393
HspAI	GCGC	1 cut(s)	565
KflI	GGGWCCC	1 cut(s)	2510
Ksp22I	TGATCA	2 cut(s)	661, 2328
LmnI	GCTCC	5 cut(s)	760, 926, 1069, 2441, 2496
LweI	GCATC	8 cut(s)	145, 971, 975, 1033, 1829, 1934, 1987, 2231
MaeI	CTAG	5 cut(s)	21, 150, 459, 546, 1718
MaeII	ACGT	5 cut(s)	186, 1163, 1332, 2158, 2393
MaeIII	GTNAC	4 cut(s)	720, 1508, 1833, 2257
MfeI	CAATTG	1 cut(s)	1557
MflI	RGATCY	3 cut(s)	1378, 1741, 1768
MhlI	GDGCHC	5 cut(s)	690, 757, 856, 1793, 2343
MlsI	TGGCCA	1 cut(s)	1701
MluNI	TGGCCA	1 cut(s)	1701
MlyI	GAGTC	7 cut(s)	728, 818, 1139, 1303, 1541, 1841, 2285
MmeI	TCCRAC	4 cut(s)	446, 1184, 1291, 2319
Mox20I	TGGCCA	1 cut(s)	1701
MroXI	GAANNNNTTC	2 cut(s)	235, 2278
MscI	TGGCCA	1 cut(s)	1701
MseI	TTAA	9 cut(s)	123, 354, 371, 395, 800, 1085, 2052, 2151, 2580
MslI	CAYNNNNRTG	1 cut(s)	2119
Msp20I	TGGCCA	1 cut(s)	1701
MspA1I	CMGCKG	1 cut(s)	2354
MspI	CCGG	2 cut(s)	71, 1455
MspR9I	CCNGG	3 cut(s)	750, 1590, 1698
MunI	CAATTG	1 cut(s)	1557
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	3 cut(s)	750, 1590, 1698
MwoI	GCNNNNNNNGC	4 cut(s)	694, 1552, 1610, 2133
NcoI	CCATGG	1 cut(s)	2343
NdeI	CATATG	1 cut(s)	2129
NlaIV	GGNNCC	9 cut(s)	689, 880, 1253, 1594, 1770, 2212, 2349, 2511, 2512
NmuCI	GTSAC	3 cut(s)	720, 1508, 1833
NspI	RCATGY	3 cut(s)	496, 728, 2525
NspV	TTCGAA	1 cut(s)	229
PaeI	GCATGC	1 cut(s)	2525
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	2 cut(s)	492, 724
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	2 cut(s)	235, 2278
PfeI	GAWTC	3 cut(s)	218, 581, 1295
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	7 cut(s)	727, 818, 1139, 1303, 1540, 1840, 2285
PpsI	GAGTC	7 cut(s)	727, 818, 1139, 1303, 1540, 1840, 2285
PpuMI	RGGWCCY	2 cut(s)	2107, 2510
PscI	ACATGT	2 cut(s)	492, 724
Psp124BI	GAGCTC	1 cut(s)	1793
Psp1406I	AACGTT	1 cut(s)	186
Psp5II	RGGWCCY	2 cut(s)	2107, 2510
Psp6I	CCWGG	3 cut(s)	748, 1588, 1696
PspGI	CCWGG	3 cut(s)	748, 1588, 1696
PspN4I	GGNNCC	9 cut(s)	689, 880, 1253, 1594, 1770, 2212, 2349, 2511, 2512
PspPI	GGNCC	5 cut(s)	879, 1541, 1593, 2107, 2510
PspPPI	RGGWCCY	2 cut(s)	2107, 2510
PstI	CTGCAG	3 cut(s)	1402, 1671, 2491
PstNI	CAGNNNCTG	4 cut(s)	952, 982, 1235, 1292
PsuI	RGATCY	3 cut(s)	1378, 1741, 1768
PvuI	CGATCG	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	2354
RsaI	GTAC	3 cut(s)	1285, 1326, 1663
RsaNI	GTAC	3 cut(s)	1284, 1325, 1662
RseI	CAYNNNNRTG	1 cut(s)	2119
SacI	GAGCTC	1 cut(s)	1793
SaqAI	TTAA	9 cut(s)	123, 354, 371, 395, 800, 1085, 2052, 2151, 2580
Sau96I	GGNCC	5 cut(s)	879, 1541, 1593, 2107, 2510
ScaI	AGTACT	1 cut(s)	1663
SchI	GAGTC	7 cut(s)	728, 818, 1139, 1303, 1541, 1841, 2285
ScrFI	CCNGG	3 cut(s)	750, 1590, 1698
SduI	GDGCHC	5 cut(s)	690, 757, 856, 1793, 2343
SfaNI	GCATC	8 cut(s)	145, 971, 975, 1033, 1829, 1934, 1987, 2231
SfcI	CTRYAG	4 cut(s)	930, 1398, 1667, 2487
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	4 cut(s)	1541, 1593, 2107, 2510
SmiMI	CAYNNNNRTG	1 cut(s)	2119
SmlI	CTYRAG	5 cut(s)	511, 883, 1203, 1657, 2549
SmoI	CTYRAG	5 cut(s)	511, 883, 1203, 1657, 2549
SphI	GCATGC	1 cut(s)	2525
SsiI	CCGC	2 cut(s)	1544, 1568
SspI	AATATT	2 cut(s)	136, 271
SspMI	CTAG	5 cut(s)	21, 150, 459, 546, 1718
SstI	GAGCTC	1 cut(s)	1793
StyD4I	CCNGG	3 cut(s)	748, 1588, 1696
StyI	CCWWGG	8 cut(s)	243, 296, 704, 1299, 1764, 1803, 2001, 2343
TaaI	ACNGT	9 cut(s)	692, 978, 1283, 1360, 1416, 1909, 2317, 2326, 2458
TaiI	ACGT	5 cut(s)	189, 1166, 1335, 2161, 2396
TaqI	TCGA	6 cut(s)	50, 229, 276, 812, 1174, 2091
TatI	WGTACW	2 cut(s)	1283, 1661
TauI	GCSGC	1 cut(s)	1570
TfiI	GAWTC	3 cut(s)	218, 581, 1295
Tru1I	TTAA	9 cut(s)	123, 354, 371, 395, 800, 1085, 2052, 2151, 2580
Tru9I	TTAA	9 cut(s)	123, 354, 371, 395, 800, 1085, 2052, 2151, 2580
TscAI	CASTG	4 cut(s)	97, 322, 1236, 2331
TseFI	GTSAC	3 cut(s)	720, 1508, 1833
Tsp45I	GTSAC	3 cut(s)	720, 1508, 1833
TspDTI	ATGAA	6 cut(s)	17, 164, 764, 1608, 1935, 2553
TspRI	CASTG	4 cut(s)	97, 322, 1236, 2331
VpaK11BI	GGWCC	4 cut(s)	1541, 1593, 2107, 2510
XagI	CCTNNNNNAGG	1 cut(s)	1620
XapI	RAATTY	7 cut(s)	472, 1098, 1366, 1458, 1501, 2242, 2542
XbaI	TCTAGA	1 cut(s)	1717
XceI	RCATGY	3 cut(s)	496, 728, 2525
XmiI	GTMKAC	1 cut(s)	1136
XmnI	GAANNNNTTC	2 cut(s)	235, 2278
XspI	CTAG	5 cut(s)	21, 150, 459, 546, 1718
ZrmI	AGTACT	1 cut(s)	1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.