Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Reverse (-)

31741154 .. 31748204

Gene Structure 7051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3465 bp

ATGGATATGGAGAGCTCGCGTAGGCCGTTTGGCAGATCGAACGAACCAGGGTTGAAGAAGGCGAGATTGAACGACGACCAAGGTGTTTTGAATCCGAATCTGAACGGCCGAGGCTTCGGACAAAGGCCCGGCGGAGCTAATCCGGCGCTTCAGAGGTTCAGAGTGAGTGATAGAGAGTCGGTGGAGGGCAATGACCCTCGCGGCGGCGGAGCCTATGTGCCGCAGCCATTGCAGCACCAGGAGCTTGTGAGCCAGTACCGGACGGCGCTGGCGGAGCTGACGTTCAATTCGAAGCCAATCATCACCAATTTGACCATAATCGCTGGGGAGAACCTCAACGCTGCGAAGGCCATCACTGCCACTATATGCGCCAACATTATTGAGATTGCACTTGGCTCCAAATCAAAACAAATTTATCGCATCCTTGTGGACATGGCTTTGCACAAAAAATCTGTAGAGTATCTTTTGCTTATCTTTGAATTTATCCCATCTTTGTTTAAGGAAGACTCAAATCCTGGTGATACAGGAACTGAACATGCACCTCATGCTCCTGGTTCAGCTGCGAAGTGGCTGGTTTCTGATCGTAGAAAGTCCTTGCAGGTTCCTAGCGAGCAGAAGTTACCATCGCTTTATCTTTTGGACAGTATTGTAAAGAATATTGGAAGGGATTACATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATATAGACAGGTTGAACCCCCTATACATCAAAGCATGCGTCATCTTTTTGGAACTTGGAAAGGTGTCTTCCCTGCTCAGACACTTCAGATGATTGAGAAAGAACTTGGGTTTGGTACTACAGCAAATGGTTCGTCCTCTGGAGTTACAACATCTAGACCAGACTCACAGTCACAACGTCCAGCACATAGCATTCATGTGAACCCCAAGTATTTGGAAAGGCAGCGTCTTCAGCAACCGACCAGGACAAAAGGGATGGCTAGTGATTTAGATGGGACTATGACAAACTCGATTGATGATTTAGACAGGCCGGACAGAGTAGCAAGTATCAGTGCTGGACGATCGTGGGTTGATCCTCCTGTTAAAATGCCTAATATTCAGCGTTCAACTAGAGATGCACTAAGTGAGCGTTTTCATGAGAAGAACGTTGGTGGCGAATATGACGACTTTGATTATGATTCTGATCTTCCAAGGAGTTCAACCTTGGGCATTGGACGATCTGGTGGGAATATTATCGAGCAAGGACATGATAAACCTTGGTATGGAGGTGGAAGCAGTGTTGCCGAAGCAATTTCCAGCCAAAGAAATGGTTTTAACAAGAAGCATGGATTAAATTACTCAGCACCTAAATCTGTAAATGCTGATCCTCGTTTACAGACACCACAAGCCATTGCAAATAGAAACAGGGGTGGGTTGTCTAGTAGTTGGAAGAATTCTGAGGAAGAGGAATTCATGTGGGATGATGTGAACTCCAGATCAACAGATCACGTAACCCCTGATCTTTCTAGTAATTCAAGAAAAGAGCGCTGGATTTCTGATGATTCAGAGAAATTGGGGTTTGGAGGTGGCTCTCGTAAACTGAAAAGAGTAAATGATCTGGACTTGGCTGCTGATATCGGTGATCAGAAAGACTTAGCTGCTCTCGGGCACCGTATGCCATCACCTTGGTCATTGCAAGAGTCACATGTTGTGGATCGGCTGACCTCTCCTGGTGCTCCTGTCATTAGTTCAGTTCATTCAGAGCGTTATGTTTCAAGTTTAAGTGGGTTATCAACAAGTGGAGACTCTTCTGTGGCAAGATTGGGAAATAGAGCACAGATGATGCCTTCTCGTATTGGAGCCTCAAGCTTTGGGTTGCCAACAAATGCTGCAACAGGGTCTAATGGAGCTGTAGGGAAACAGCAGCAGTCTCTGAGAGCTGCATCACCATCTGGACAGTTGCTGATGCACCAGCATTCTCCCTCACCTACATCAAAAATACAGCATCCCCGTAATTATTTGGCTGAGCAAGACCCTGCTCATGCTCCATCCCTTCCTCCTGATTTAAAAGTATCTCAAATTTTGGGAAAATCGGACTTAGGGTTGCATAGCCAGTATACTGAGGACTCTGCGCCTATTCCAACGTCCAATGTTCGATTGGGTGGCATGGCGAAATCACAGCCTCAAGATTTGAAGGCTTTGTCTTCCTCAGTGGCTGCCATCCAATCAAGGCACCACTATCCCTTCCGACAACAACAAGACAGTACAGAGCCTGAATCCTTGGATCAGACTCAGAAGCCCCATGTACCTCACGTTGCTACTTCTATAATGCCCTCAACTGTTAGAAATTCTGTATCAGATCTTTCTAATCTCCTTGCTGCAGAAACTTCAGGACAGTCAAGCACAAGAAAAAATGCCACCAGAGTCAGGTGGTCCACCCCCTTGCCAATTGGACGGCCGCCTACCAAAGTTGCACTTCCAGGGTCCAAAGTTGCAGCAGCACCACCTTCATTAGGTCATCCTTCCTGTGATAACTCGCCGACCACCTCAAGTACTCTGCAGAAGGTTGCACATCCACCTCTTCCACCTGGCCAACCACCTTTGTCTCTAGAGGGTAGCTCAACAGCAAAAGATCCAAATCTGGTGAAAAATGCCAAGGATCCAATATCAAACCTTTTGAGCTCTTTAGTTGCCAAGGGGTTGATATCTGCATCAAAGTCAGAGTCACCTACTCTTCTGCCATCTCAAAAGCCGATAGAGGTGCAAAGCCAGAACCTATCCACGACTACCACCACTACTGTCTCTCCAGTTTCAGCATCATCAAAAGTTCCTGTTTCATCTGAAATGGATGATGCGTCTCTCACAGAACAGGTGGCTAAACCCTCTGATGCCTTGGCTCAATCTACTAAGACAGAAAAAAGAAACCTAATAGGATTTGAGTTTAAGCCAGATAAAATCCGAGAATTACATCCATCTGTCATCGATGAGCTTTTTGATGACCTTCCACATAAATGTAGCATATGTGGCCTCAGGCTCAAACTTAAAGAACGTCTTGACAGGCACTTGGAATGGCATACTTTGAAAACTCCCGAAGCAGATGGTTCCATTAAGGCATCAAGGGGGTGGTATGCAAATTCAACCAACTGGGTTACTGGAAAGGCAGGAAGTTCTTCCGAACTTGACTCCAACAATTCAAACGACATGACTGGCAAGACAGTGATCAGTAATGAGCCCATGGTTCCAGCTGATGAAAGCCAATGTGCGTGTGTTGTATGTGGTAATACGTTTGAAGACTTCTATTGCCAAGAAAGTGATGACTGGATGTTCAAAGGAGCTGTGTATATGACTGTTCCATCTGGGGATGGTGAGTTTGGAACTGCAGAGGGGAGCATTCTGAAGGGTCCCATTGTGCATGCAAATTGTATGGATGAAAATTCGCTAGAGGATTTGGGACTGGCTGCTACCCGAATTAAATTGGAAAAGGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

1154

Amino Acids

125.11

Weight (kDa)

7.41

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	198 - 268	1.8e-09	CID domain
zf_PCFS4	PF23228	1067 - 1135	5.5e-30	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccB1I	GGYRCC	2 cut(s)	1641, 2205
AccI	GTMKAC	1 cut(s)	2090
AccII	CGCG	2 cut(s)	19, 201
AciI	CCGC	7 cut(s)	132, 201, 204, 207, 221, 272, 2432
AclI	AACGTT	1 cut(s)	1140
AclWI	GGATC	7 cut(s)	1061, 1352, 1695, 2265, 2600, 2627, 2640
AcoI	YGGCCR	3 cut(s)	106, 2429, 2563
AcsI	RAATTY	8 cut(s)	411, 479, 1426, 1442, 2052, 2320, 3106, 3406
AcuI	CTGAAG	5 cut(s)	134, 785, 929, 2346, 3389
AdeI	CACNNNGTG	1 cut(s)	1118
AfaI	GTAC	5 cut(s)	257, 832, 2239, 2280, 2527
AfeI	AGCGCT	1 cut(s)	1520
AfiI	CCNNNNNNNGG	4 cut(s)	203, 1256, 2400, 2486
AflIII	ACRYGT	1 cut(s)	1678
AhdI	GACNNNNNGTC	1 cut(s)	883
AjnI	CCWGG	8 cut(s)	46, 237, 514, 550, 956, 1702, 2452, 2560
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
Alw21I	GWGCWC	4 cut(s)	17, 1711, 1810, 2657
Alw26I	GTCTC	5 cut(s)	1770, 1908, 2583, 2779, 2835
AlwI	GGATC	7 cut(s)	1061, 1352, 1695, 2265, 2600, 2627, 2640
AlwNI	CAGNNNCTG	5 cut(s)	530, 1906, 1936, 2189, 2246
Ama87I	CYCGRG	1 cut(s)	1637
Aor51HI	AGCGCT	1 cut(s)	1520
AoxI	GGCC	8 cut(s)	23, 106, 125, 348, 1022, 2429, 2563, 2998
ApoI	RAATTY	8 cut(s)	411, 479, 1426, 1442, 2052, 2320, 3106, 3406
ArsI	GACNNNNNNTTYG	8 cut(s)	271, 303, 739, 771, 833, 865, 2681, 2713
Asp700I	GAANNNNTTC	1 cut(s)	3142
AspLEI	GCGC	5 cut(s)	148, 268, 371, 1521, 2107
AspS9I	GGNCC	4 cut(s)	126, 2406, 2457, 3374
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	9 cut(s)	295, 530, 1625, 1647, 1911, 1950, 2629, 2691, 3350
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	1637
AvaII	GGWCC	3 cut(s)	2406, 2457, 3374
AxyI	CCTNAGG	2 cut(s)	699, 3002
BaeGI	GKGCMC	1 cut(s)	1644
BalI	TGGCCA	1 cut(s)	2565
BamHI	GGATCC	1 cut(s)	2632
BanI	GGYRCC	2 cut(s)	1641, 2205
BanII	GRGCYC	3 cut(s)	17, 2657, 3207
BbsI	GAAGAC	5 cut(s)	510, 775, 935, 2169, 3270
Bbv12I	GWGCWC	4 cut(s)	17, 1711, 1810, 2657
BceAI	ACGGC	4 cut(s)	10, 121, 279, 2444
BcgI	CGANNNNNNTGC	4 cut(s)	828, 862, 2716, 2750
BciT130I	CCWGG	8 cut(s)	48, 239, 516, 552, 958, 1704, 2454, 2562
BclI	TGATCA	2 cut(s)	1615, 3192
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	5 cut(s)	1770, 1908, 2583, 2779, 2835
BfaI	CTAG	8 cut(s)	606, 870, 975, 1104, 1413, 1500, 2582, 3413
BfmI	CTRYAG	6 cut(s)	453, 834, 1884, 2352, 2531, 3351
BfoI	RGCGCY	3 cut(s)	149, 269, 1522
BfuAI	ACCTGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	2332
BlpI	GCTNAGC	1 cut(s)	1998
BmcAI	AGTACT	1 cut(s)	2527
Bme1390I	CCNGG	9 cut(s)	48, 129, 239, 516, 552, 958, 1704, 2454, 2562
Bme18I	GGWCC	3 cut(s)	2406, 2457, 3374
BmeRI	GACNNNNNGTC	1 cut(s)	883
BmeT110I	CYCGRG	1 cut(s)	1637
BmgT120I	GGNCC	4 cut(s)	126, 2406, 2457, 3374
BmrFI	CCNGG	9 cut(s)	48, 129, 239, 516, 552, 958, 1704, 2454, 2562
BmrI	ACTGGG	1 cut(s)	3127
BmuI	ACTGGG	1 cut(s)	3127
BpiI	GAAGAC	5 cut(s)	510, 775, 935, 2169, 3270
BplI	GAGNNNNNCTC	2 cut(s)	2576, 2608
BpmI	CTGGAG	3 cut(s)	876, 1450, 2763
Bpu1102I	GCTNAGC	1 cut(s)	1998
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	3 cut(s)	1822, 2142, 2506
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	2955
BsaAI	YACGTR	1 cut(s)	1483
BsaBI	GATNNNNATC	2 cut(s)	1176, 2610
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	6 cut(s)	201, 231, 266, 296, 2761, 2791
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 1256, 2400, 2486
Bse1I	ACTGG	8 cut(s)	253, 2086, 2780, 3122, 3130, 3184, 3296, 3432
Bse21I	CCTNAGG	2 cut(s)	699, 3002
Bse3DI	GCAATG	4 cut(s)	196, 227, 1383, 1664
Bse8I	GATNNNNATC	2 cut(s)	1176, 2610
BseBI	CCWGG	8 cut(s)	48, 239, 516, 552, 958, 1704, 2454, 2562
BseCI	ATCGAT	1 cut(s)	2955
BseJI	GATNNNNATC	2 cut(s)	1176, 2610
BseLI	CCNNNNNNNGG	4 cut(s)	203, 1256, 2400, 2486
BseMI	GCAATG	4 cut(s)	196, 227, 1383, 1664
BseNI	ACTGG	8 cut(s)	253, 2086, 2780, 3122, 3130, 3184, 3296, 3432
BseSI	GKGCMC	1 cut(s)	1644
BseX3I	CGGCCG	2 cut(s)	106, 2429
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	19, 201
Bsh1285I	CGRYCG	3 cut(s)	109, 1058, 2432
BshFI	GGCC	8 cut(s)	25, 108, 127, 350, 1024, 2431, 2565, 3000
BshNI	GGYRCC	2 cut(s)	1641, 2205
BshVI	ATCGAT	1 cut(s)	2955
BsiEI	CGRYCG	3 cut(s)	109, 1058, 2432
BsiHKAI	GWGCWC	4 cut(s)	17, 1711, 1810, 2657
BsiHKCI	CYCGRG	1 cut(s)	1637
BsiSI	CCGG	4 cut(s)	129, 143, 259, 1025
BslFI	GGGAC	3 cut(s)	1003, 3360, 3438
BslI	CCNNNNNNNGG	4 cut(s)	203, 1256, 2400, 2486
BsmAI	GTCTC	5 cut(s)	1770, 1908, 2583, 2779, 2835
BsmBI	CGTCTC	1 cut(s)	2835
BsmFI	GGGAC	3 cut(s)	1003, 3360, 3438
BsmI	GAATGC	3 cut(s)	906, 1948, 3363
BsnI	GGCC	8 cut(s)	25, 108, 127, 350, 1024, 2431, 2565, 3000
BsoBI	CYCGRG	1 cut(s)	1637
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	6 cut(s)	17, 1644, 1711, 1810, 2657, 3207
Bsp1720I	GCTNAGC	1 cut(s)	1998
Bsp19I	CCATGG	1 cut(s)	3207
BspACI	CCGC	7 cut(s)	132, 201, 204, 207, 221, 272, 2432
BspANI	GGCC	8 cut(s)	25, 108, 127, 350, 1024, 2431, 2565, 3000
BspDI	ATCGAT	1 cut(s)	2955
BspFNI	CGCG	2 cut(s)	19, 201
BspHI	TCATGA	1 cut(s)	1129
BspMAI	CTGCAG	3 cut(s)	2356, 2535, 3355
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	7 cut(s)	1061, 1352, 1695, 2265, 2600, 2627, 2640
BspT104I	TTCGAA	1 cut(s)	290
BspT107I	GGYRCC	2 cut(s)	1641, 2205
BsrDI	GCAATG	4 cut(s)	196, 227, 1383, 1664
BsrI	ACTGG	8 cut(s)	253, 2086, 2780, 3122, 3130, 3184, 3296, 3432
BssNAI	GTATAC	1 cut(s)	2091
Bst1107I	GTATAC	1 cut(s)	2091
Bst2UI	CCWGG	8 cut(s)	48, 239, 516, 552, 958, 1704, 2454, 2562
Bst6I	CTCTTC	4 cut(s)	1431, 1786, 2559, 2712
BstAPI	GCANNNNNTGC	3 cut(s)	229, 545, 1648
BstBAI	YACGTR	1 cut(s)	1483
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	5 cut(s)	17, 270, 611, 752, 3387
BstDSI	CCRYGG	1 cut(s)	3207
BstENI	CCTNNNNNAGG	1 cut(s)	2484
BstFNI	CGCG	2 cut(s)	19, 201
BstH2I	RGCGCY	3 cut(s)	149, 269, 1522
BstHHI	GCGC	5 cut(s)	148, 268, 371, 1521, 2107
BstMAI	GTCTC	5 cut(s)	1770, 1908, 2583, 2779, 2835
BstMCI	CGRYCG	3 cut(s)	109, 1058, 2432
BstNI	CCWGG	8 cut(s)	48, 239, 516, 552, 958, 1704, 2454, 2562
BstNSI	RCATGY	4 cut(s)	539, 754, 1682, 3389
BstSCI	CCNGG	9 cut(s)	46, 127, 237, 514, 550, 956, 1702, 2452, 2560
BstSFI	CTRYAG	6 cut(s)	453, 834, 1884, 2352, 2531, 3351
BstSLI	GKGCMC	1 cut(s)	1644
BstUI	CGCG	2 cut(s)	19, 201
BstV2I	GAAGAC	5 cut(s)	510, 775, 935, 2169, 3270
BstX2I	RGATCY	3 cut(s)	2332, 2605, 2632
BstXI	CCANNNNNNTGG	3 cut(s)	928, 1301, 1659
BstYI	RGATCY	3 cut(s)	2332, 2605, 2632
BstZ17I	GTATAC	1 cut(s)	2091
BstZI	CGGCCG	2 cut(s)	106, 2429
Bsu15I	ATCGAT	1 cut(s)	2955
Bsu36I	CCTNAGG	2 cut(s)	699, 3002
BsuRI	GGCC	8 cut(s)	25, 108, 127, 350, 1024, 2431, 2565, 3000
BsuTUI	ATCGAT	1 cut(s)	2955
BtgI	CCRYGG	1 cut(s)	3207
BtgZI	GCGATG	1 cut(s)	609
BtsI	GCAGTG	2 cut(s)	354, 1276
BtsIMutI	CAGTG	5 cut(s)	354, 1051, 1276, 2190, 3195
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	5 cut(s)	17, 270, 611, 752, 3387
CaiI	CAGNNNCTG	5 cut(s)	530, 1906, 1936, 2189, 2246
CciI	TCATGA	1 cut(s)	1129
CfoI	GCGC	5 cut(s)	148, 268, 371, 1521, 2107
Cfr13I	GGNCC	4 cut(s)	126, 2406, 2457, 3374
ClaI	ATCGAT	1 cut(s)	2955
CseI	GACGC	3 cut(s)	743, 929, 2817
Csp6I	GTAC	5 cut(s)	256, 831, 2238, 2279, 2526
CviQI	GTAC	5 cut(s)	256, 831, 2238, 2279, 2526
DraI	TTTAAA	1 cut(s)	2040
DraIII	CACNNNGTG	1 cut(s)	1118
DriI	GACNNNNNGTC	1 cut(s)	883
EaeI	YGGCCR	3 cut(s)	106, 2429, 2563
EagI	CGGCCG	2 cut(s)	106, 2429
Eam1104I	CTCTTC	4 cut(s)	1431, 1786, 2559, 2712
Eam1105I	GACNNNNNGTC	1 cut(s)	883
EarI	CTCTTC	4 cut(s)	1431, 1786, 2559, 2712
EciI	GGCGGA	3 cut(s)	147, 222, 287
Ecl136II	GAGCTC	2 cut(s)	15, 2655
EclXI	CGGCCG	2 cut(s)	106, 2429
Eco24I	GRGCYC	3 cut(s)	17, 2657, 3207
Eco32I	GATATC	2 cut(s)	1609, 2679
Eco47I	GGWCC	3 cut(s)	2406, 2457, 3374
Eco47III	AGCGCT	1 cut(s)	1520
Eco52I	CGGCCG	2 cut(s)	106, 2429
Eco53kI	GAGCTC	2 cut(s)	15, 2655
Eco57I	CTGAAG	5 cut(s)	134, 785, 929, 2346, 3389
Eco81I	CCTNAGG	2 cut(s)	699, 3002
Eco88I	CYCGRG	1 cut(s)	1637
EcoICRI	GAGCTC	2 cut(s)	15, 2655
EcoNI	CCTNNNNNAGG	1 cut(s)	2484
EcoO109I	RGGNCCY	1 cut(s)	3374
EcoRI	GAATTC	2 cut(s)	1426, 1442
EcoRII	CCWGG	8 cut(s)	46, 237, 514, 550, 956, 1702, 2452, 2560
EcoRV	GATATC	2 cut(s)	1609, 2679
EcoT38I	GRGCYC	3 cut(s)	17, 2657, 3207
Esp3I	CGTCTC	1 cut(s)	2835
FalI	AAGNNNNNCTT	4 cut(s)	2433, 2465, 3009, 3041
FaqI	GGGAC	3 cut(s)	1003, 3360, 3438
FauNDI	CATATG	1 cut(s)	2993
FbaI	TGATCA	2 cut(s)	1615, 3192
FblI	GTMKAC	1 cut(s)	2090
FriOI	GRGCYC	3 cut(s)	17, 2657, 3207
FspBI	CTAG	8 cut(s)	606, 870, 975, 1104, 1413, 1500, 2582, 3413
GlaI	GCGC	5 cut(s)	147, 267, 370, 1520, 2106
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	3 cut(s)	876, 1450, 2763
HaeII	RGCGCY	3 cut(s)	149, 269, 1522
HaeIII	GGCC	8 cut(s)	25, 108, 127, 350, 1024, 2431, 2565, 3000
HapII	CCGG	4 cut(s)	129, 143, 259, 1025
HgaI	GACGC	3 cut(s)	743, 929, 2817
HhaI	GCGC	5 cut(s)	148, 268, 371, 1521, 2107
Hin6I	GCGC	5 cut(s)	146, 266, 369, 1519, 2105
HinP1I	GCGC	5 cut(s)	146, 266, 369, 1519, 2105
HindIII	AAGCTT	1 cut(s)	1840
HpaII	CCGG	4 cut(s)	129, 143, 259, 1025
HphI	GGTGA	9 cut(s)	295, 530, 1625, 1647, 1911, 1950, 2629, 2691, 3350
Hpy166II	GTNNAC	7 cut(s)	430, 916, 1367, 1462, 1571, 2091, 2409
Hpy8I	GTNNAC	7 cut(s)	430, 916, 1367, 1462, 1571, 2091, 2409
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4IV	ACGT	8 cut(s)	281, 892, 1140, 1482, 2117, 2286, 3022, 3257
HpySE526I	ACGT	8 cut(s)	281, 892, 1140, 1482, 2117, 2286, 3022, 3257
HspAI	GCGC	5 cut(s)	146, 266, 369, 1519, 2105
KflI	GGGWCCC	1 cut(s)	3374
Ksp22I	TGATCA	2 cut(s)	1615, 3192
MaeI	CTAG	8 cut(s)	606, 870, 975, 1104, 1413, 1500, 2582, 3413
MaeII	ACGT	8 cut(s)	281, 892, 1140, 1482, 2117, 2286, 3022, 3257
MaeIII	GTNAC	7 cut(s)	618, 859, 885, 1483, 1674, 2697, 3121
MfeI	CAATTG	1 cut(s)	2421
MflI	RGATCY	3 cut(s)	2332, 2605, 2632
MhlI	GDGCHC	6 cut(s)	17, 1644, 1711, 1810, 2657, 3207
MlsI	TGGCCA	1 cut(s)	2565
MluNI	TGGCCA	1 cut(s)	2565
MmeI	TCCRAC	4 cut(s)	1400, 2138, 2245, 3183
Mox20I	TGGCCA	1 cut(s)	2565
MroXI	GAANNNNTTC	1 cut(s)	3142
MscI	TGGCCA	1 cut(s)	2565
MslI	CAYNNNNRTG	3 cut(s)	425, 911, 2983
Msp20I	TGGCCA	1 cut(s)	2565
MspA1I	CMGCKG	2 cut(s)	560, 3218
MspI	CCGG	4 cut(s)	129, 143, 259, 1025
MspR9I	CCNGG	9 cut(s)	48, 129, 239, 516, 552, 958, 1704, 2454, 2562
MunI	CAATTG	1 cut(s)	2421
Mva1269I	GAATGC	3 cut(s)	906, 1948, 3363
MvaI	CCWGG	8 cut(s)	48, 239, 516, 552, 958, 1704, 2454, 2562
MvnI	CGCG	2 cut(s)	19, 201
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	3207
NdeI	CATATG	1 cut(s)	2993
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	3 cut(s)	885, 1674, 2697
NspI	RCATGY	4 cut(s)	539, 754, 1682, 3389
NspV	TTCGAA	1 cut(s)	290
PaeI	GCATGC	2 cut(s)	754, 3389
PagI	TCATGA	1 cut(s)	1129
PciI	ACATGT	1 cut(s)	1678
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 287, 1146
PctI	GAATGC	3 cut(s)	906, 1948, 3363
PdmI	GAANNNNTTC	1 cut(s)	3142
PfeI	GAWTC	5 cut(s)	91, 97, 1172, 1535, 2249
Ple19I	CGATCG	1 cut(s)	1058
Ppu21I	YACGTR	1 cut(s)	1483
PpuMI	RGGWCCY	1 cut(s)	3374
PscI	ACATGT	1 cut(s)	1678
Psp124BI	GAGCTC	2 cut(s)	17, 2657
Psp1406I	AACGTT	1 cut(s)	1140
Psp5II	RGGWCCY	1 cut(s)	3374
Psp6I	CCWGG	8 cut(s)	46, 237, 514, 550, 956, 1702, 2452, 2560
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	8 cut(s)	46, 237, 514, 550, 956, 1702, 2452, 2560
PspPI	GGNCC	4 cut(s)	126, 2406, 2457, 3374
PspPPI	RGGWCCY	1 cut(s)	3374
PsrI	GAACNNNNNNTAC	2 cut(s)	723, 755
PstI	CTGCAG	3 cut(s)	2356, 2535, 3355
PstNI	CAGNNNCTG	5 cut(s)	530, 1906, 1936, 2189, 2246
PsuI	RGATCY	3 cut(s)	2332, 2605, 2632
PvuI	CGATCG	1 cut(s)	1058
PvuII	CAGCTG	2 cut(s)	560, 3218
RsaI	GTAC	5 cut(s)	257, 832, 2239, 2280, 2527
RsaNI	GTAC	5 cut(s)	256, 831, 2238, 2279, 2526
RseI	CAYNNNNRTG	3 cut(s)	425, 911, 2983
SacI	GAGCTC	2 cut(s)	17, 2657
Sau96I	GGNCC	4 cut(s)	126, 2406, 2457, 3374
ScaI	AGTACT	1 cut(s)	2527
ScrFI	CCNGG	9 cut(s)	48, 129, 239, 516, 552, 958, 1704, 2454, 2562
SduI	GDGCHC	6 cut(s)	17, 1644, 1711, 1810, 2657, 3207
SfcI	CTRYAG	6 cut(s)	453, 834, 1884, 2352, 2531, 3351
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	3 cut(s)	2406, 2457, 3374
SmiMI	CAYNNNNRTG	3 cut(s)	425, 911, 2983
SmlI	CTYRAG	3 cut(s)	1837, 2157, 2521
SmoI	CTYRAG	3 cut(s)	1837, 2157, 2521
SphI	GCATGC	2 cut(s)	754, 3389
SsiI	CCGC	7 cut(s)	132, 201, 204, 207, 221, 272, 2432
SspI	AATATT	3 cut(s)	658, 1090, 1225
SspMI	CTAG	8 cut(s)	606, 870, 975, 1104, 1413, 1500, 2582, 3413
SstI	GAGCTC	2 cut(s)	17, 2657
StyD4I	CCNGG	9 cut(s)	46, 127, 237, 514, 550, 956, 1702, 2452, 2560
TaiI	ACGT	8 cut(s)	284, 895, 1143, 1485, 2120, 2289, 3025, 3260
TaqI	TCGA	6 cut(s)	38, 290, 1004, 1230, 2128, 2955
TatI	WGTACW	2 cut(s)	2237, 2525
TauI	GCSGC	4 cut(s)	204, 207, 223, 2434
TfiI	GAWTC	5 cut(s)	91, 97, 1172, 1535, 2249
TscAI	CASTG	5 cut(s)	361, 1051, 1276, 2190, 3195
TseFI	GTSAC	3 cut(s)	885, 1674, 2697
Tsp45I	GTSAC	3 cut(s)	885, 1674, 2697
TspDTI	ATGAA	8 cut(s)	899, 1118, 1435, 1718, 2472, 2799, 3237, 3417
TspRI	CASTG	5 cut(s)	361, 1051, 1276, 2190, 3195
VpaK11BI	GGWCC	3 cut(s)	2406, 2457, 3374
XagI	CCTNNNNNAGG	1 cut(s)	2484
XapI	RAATTY	8 cut(s)	411, 479, 1426, 1442, 2052, 2320, 3106, 3406
XbaI	TCTAGA	2 cut(s)	869, 2581
XceI	RCATGY	4 cut(s)	539, 754, 1682, 3389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2128
XmiI	GTMKAC	1 cut(s)	2090
XmnI	GAANNNNTTC	1 cut(s)	3142
XspI	CTAG	8 cut(s)	606, 870, 975, 1104, 1413, 1500, 2582, 3413
ZrmI	AGTACT	1 cut(s)	2527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.