Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Forward (+)

17786125 .. 17793848

Gene Structure 7724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG200000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3360 bp

ATGGATATGGAGAGCTCGCGTAGGCCGTTTGGCAGATCGAACGAACCAGGGTTGAAGAAGGCGAGATTGAACGACGACCAAGGTGTTTTGAATCCGAATCTGAACGGCCGAGGCTTCGGACAAAGGCCCGGCGGAGCTAATCCGGCGCTTCAGAGGTTCAGGGTGAGTGATAGAGAGTCGGTGGAGGGCAATGACCCTCGCGGCGGCGGAGCCTATGTGCCGCAGCCAGTGCAGCACCAGGAGCTCGTGAGCCAGTACCGGACGGCGCTGGCGGAGCTGACGTTCAATTCGAAGCCAATCATCACCAATTTGACCATAATCGCTGGGGAGAACGTCAACGCTGCGAAGGCCGTCACTGCCACTATATGCGCCAACATTATTGAGGTTCCTAGCGAGCAGAAGTTACCATCGCTTTATCTTTTGGACAGTATTGTAAAGAATATTGGAAGGGATTACATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATATAGACAGGTTGAACCCCCTATACATCAAAGCATGCGTCATCTTTTTGGAACTTGGAAAGGTGTCTTCCCTGCTCAGACACTTCAGATGATTGAGAAAGAACTTGGGTTTGGTACTACAGCAAATGGTTCGTCCTCTGGAGTTACAACATCTAGACCAGACTCACAGTCACAACGTCCAGCACATAGCATTCATGTGAACCCCAAGTATTTGGAAAGGCAGCGTCTTCAGCAACCAACCAGGACAAAAGGGATGGCTAGTGATTTAGATGGGACTATGACAAACTCGATTGATGATTTAGACAGGCCGGACAGAGTAGCAAGTATCAGTGCTGGACGATCGTGGGTTGATCCTCCTGTTAAAATGCCTAATATTCAGCGTTCAACTAGAGATGCACTAAGTGAGCGTTTTCATGAGAAGAACGTTGGTGGCGAATATGACGACTTTGATTATGATTCTGATCTTCGAAGGAGTTCAACCTTGGGCATTGGACGATCTGGTGGGAATATTATCGAGCAAGGACATGATAAACCTTGGTATGGAGGTGGAAGCAGTGTTGCCGAAACAATTTCCAGCCAAAGAAATGGTTTTAACAAGAAGCATGGATTAAATTACTCAGCACCTAAATCATTAAATGCTGATCCTCGTTTACAGACACCACAAGCCATTGCAAATAGAAACAGGGGTGGGTTGTCTAGTAGTTGGAAGAATTCTGAGGAAGAGGAATACATGTGGGATGATGTGAACTCAAGATCAACAGATCACATAACCCCTGATCTTTCTAGTAATTCAAGAAAAGAGCGCTGGATTTCTGATGATTCAGAGAAATTGGGGTTTGTTGGTGGCTCTCGTAAACTGAAAAGAGTAAATGATTTGGACTTGGCTGCTGATATCGGTGATCAGAAAGATTTAGCTGCTCTCGGGCACCGTATGCCATCACCTTGGTCATTGCAAGAGTCACATGTTGTGGATCGGCTGACCTCTCCTGGTGCTCCTGTCATTAGTTCAGTTCATTCAGAGCGTTATGTTTCAAGTTTAAGTGGGTTATCGACAAGTGGAGACTCTTCTGTGGCAAGATTGGGAAATAGAGCACAGATGATGTCTTCTCGTATTGGGGCCTCAAGCTTTGGGTTGCCAACAAATGCTGCAACAGGGTCTAATGGAGCTGTAGGGAAACAGCAGCAGTCTCTGAGAGCTGCATCACCATCTGGACAGTTGCTGATGCACCAGCATTCTCCCTCACCTACATCAAAAATACAGCATCCCCGTAATTATTTGGCTGAGCAAGACCCTGCTCATGCTCCATCCCTTCCTCCTGATTTAAAAGTATCTGAAATTTTGGGAAAATCGGACTTAGGGTTGCATAGCCAGTATACTGAGGACTCTTTGCCTATTCCAACGTCCAATGTTCGATTAGGTGGCATGGCGAAATCACAGGCTCAAGATTTGAAGGCTTTGTCTTCCTCAGTGGCTGCCATCCAATCAAGGCACCACTATCCCTTCCGACAACAACAAGACAGTACAGAGCCTGAATCCTTGGATCAGACTCAGAAGCCCCATGTACCTCACGTTGCTACTTCTATAATGCCCTCAACAGTTAGAAATTCTGTATCAGATCTTTCTAATCTCCTTGCTGCAGAAACTTCAGGACAGTCAAGCACAAGTAGTTTGTTGGCTGCTGTTTTGAAGACCGGAATTCTCTCTAATAAATCAATTACTGGTAGCCTGCCCAATTTGAATTTTGGTGACAAGGAAAAAATGCCACCAGAGTCAGGTGGTCCGCCCCCCTTGCCAATTGGACGGCCGCCTACCAAAGTTGCACTTCCAGGGTCCAAAGTTGCAGCAGCAGCACCTTCATTAGGTCATCCTTCCCGTGAGAACTCGCCGACCACCTCAAGTACTCTGCAGAAGGTTGCACATCCACCTCTTCCACCTGGCCAACCACCTTTGTCTCTAGAGGGTAGCTCAACAGCAAAAGATCCAAATGTGGTGAAAAATGCCAAGGATCCAATATCAAACCTTTTGAGCTCTTTAGTTGCCAAGGGGTTGATATCTGCATCAAAGTCAGAGTCACCTACTCTTCTGCCATCTCAAAAGCCGATAGAGGTGCAAAGCCAGAACCTATCCACGACTACCACCACTACTGTCTCTCCAGTTTCAGCATCATCAAAAGTTCCTGTTTCATCTGAAATGGATGATGTGTCTCTCACAGAACAGGTGGCTAAACCCTCTGATGCCTTGGCTCAATCTACTAAGACAGAAAAAAGAAACCTAATAGGATTTGAGTTTAAGCCAGATAAAATCCGAGAATTACATCCATCTGTCATCGATGAGCTTTTTGAGGACCTTCCACATAAATGTAGCATATGTGGCCTCAGGCTCAAACTTAAAGAACGTCTTGATAGGCACTTGGAATGGCATACTTTGAAAACTCCCGAAGCAGATGGTTCCATTACGGCATCAAGGGGGTGGTATGCAAATTCAACCAACTGGGTTACTGGAAAGGCAGGAAGTTCTTCTGAACTTGACTCCAACAATTCAAACGACATGACTGTCAAGACAGTGATCAGTAATGAGCCCATGGTTCCAGCTGACGAAAGCCAATGTGCGTGTGTTATATGTGGTAATACGTTTGAAGACTTCTATTGTCAAGAAAGTGATGACTGGATGTTCAAAGGAGCTGTGTATATGACTGTTCCATCTGGGGATGGTGAGTTTGGAACTGCAGAGGGGAGCGTTCTGAAGGGTCCCATTGTGCATGCAAATTGTATGGATGAAAATTCACTTGAGGATTTGGGACTGGTTGCTACCCGAATTAAATTGATAACCGTCGGTGTCAACACAGGTCAAACGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

1119

Amino Acids

120.73

Weight (kDa)

6.75

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	88 - 196	8.7e-13	CID domain
zf_PCFS4	PF23228	1025 - 1093	1.1e-30	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3053
AccB1I	GGYRCC	2 cut(s)	1425, 1989
AccI	GTMKAC	1 cut(s)	1874
AccII	CGCG	2 cut(s)	19, 201
AciI	CCGC	8 cut(s)	132, 201, 204, 207, 221, 272, 2282, 2306
AclI	AACGTT	1 cut(s)	924
AclWI	GGATC	7 cut(s)	845, 1136, 1479, 2049, 2474, 2501, 2514
AcoI	YGGCCR	3 cut(s)	106, 2303, 2437
AcsI	RAATTY	7 cut(s)	1210, 1836, 2104, 2196, 2239, 2980, 3280
AcuI	CTGAAG	5 cut(s)	134, 569, 713, 2130, 3263
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	5 cut(s)	257, 616, 2023, 2064, 2401
AfeI	AGCGCT	1 cut(s)	1304
AfiI	CCNNNNNNNGG	4 cut(s)	203, 1040, 2273, 2360
AflIII	ACRYGT	2 cut(s)	1230, 1462
AhdI	GACNNNNNGTC	1 cut(s)	667
AjnI	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
Alw21I	GWGCWC	5 cut(s)	17, 246, 1495, 1594, 2531
Alw26I	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
AlwI	GGATC	7 cut(s)	845, 1136, 1479, 2049, 2474, 2501, 2514
AlwNI	CAGNNNCTG	4 cut(s)	1690, 1720, 1973, 2030
Ama87I	CYCGRG	1 cut(s)	1421
Aor51HI	AGCGCT	1 cut(s)	1304
AoxI	GGCC	9 cut(s)	23, 106, 125, 348, 806, 1617, 2303, 2437, 2872
ApoI	RAATTY	7 cut(s)	1210, 1836, 2104, 2196, 2239, 2980, 3280
ArsI	GACNNNNNNTTYG	8 cut(s)	271, 303, 523, 555, 617, 649, 2555, 2587
Asp700I	GAANNNNTTC	2 cut(s)	973, 3016
AspLEI	GCGC	4 cut(s)	148, 268, 371, 1305
AspS9I	GGNCC	6 cut(s)	126, 1617, 2279, 2331, 2845, 3248
AsuC2I	CCSGG	1 cut(s)	129
AsuII	TTCGAA	2 cut(s)	290, 967
AvaI	CYCGRG	1 cut(s)	1421
AvaII	GGWCC	4 cut(s)	2279, 2331, 2845, 3248
AxyI	CCTNAGG	2 cut(s)	483, 2876
BaeGI	GKGCMC	1 cut(s)	1428
BalI	TGGCCA	1 cut(s)	2439
BamHI	GGATCC	1 cut(s)	2506
BanI	GGYRCC	2 cut(s)	1425, 1989
BanII	GRGCYC	4 cut(s)	17, 246, 2531, 3081
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	6 cut(s)	559, 719, 1596, 1953, 2195, 3144
Bbv12I	GWGCWC	5 cut(s)	17, 246, 1495, 1594, 2531
BceAI	ACGGC	6 cut(s)	10, 121, 279, 335, 2318, 2973
BcgI	CGANNNNNNTGC	4 cut(s)	612, 646, 2590, 2624
BciT130I	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
BclI	TGATCA	2 cut(s)	1399, 3066
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
BfaI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
BfmI	CTRYAG	5 cut(s)	618, 1668, 2136, 2405, 3225
BfoI	RGCGCY	3 cut(s)	149, 269, 1306
BglII	AGATCT	1 cut(s)	2116
BlpI	GCTNAGC	1 cut(s)	1782
BmcAI	AGTACT	1 cut(s)	2401
Bme1390I	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
Bme18I	GGWCC	4 cut(s)	2279, 2331, 2845, 3248
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmeT110I	CYCGRG	1 cut(s)	1421
BmgT120I	GGNCC	6 cut(s)	126, 1617, 2279, 2331, 2845, 3248
BmrFI	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
BmrI	ACTGGG	1 cut(s)	3001
BmsI	GCATC	8 cut(s)	883, 1709, 1713, 1771, 2567, 2672, 2725, 2969
BmuI	ACTGGG	1 cut(s)	3001
BpiI	GAAGAC	6 cut(s)	559, 719, 1596, 1953, 2195, 3144
BplI	GAGNNNNNCTC	2 cut(s)	2450, 2482
BpmI	CTGGAG	2 cut(s)	660, 2637
Bpu1102I	GCTNAGC	1 cut(s)	1782
Bpu14I	TTCGAA	2 cut(s)	290, 967
BpuEI	CTTGAG	5 cut(s)	1234, 1606, 1926, 2380, 3308
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	2829
BsaBI	GATNNNNATC	1 cut(s)	960
BsaWI	WCCGGW	2 cut(s)	258, 2192
BsaXI	ACNNNNNCTCC	6 cut(s)	201, 231, 266, 296, 2635, 2665
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 1040, 2273, 2360
Bse1I	ACTGG	9 cut(s)	227, 253, 1870, 2224, 2654, 2996, 3004, 3170, 3306
Bse21I	CCTNAGG	2 cut(s)	483, 2876
Bse3DI	GCAATG	3 cut(s)	196, 1167, 1448
Bse8I	GATNNNNATC	1 cut(s)	960
BseBI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
BseCI	ATCGAT	1 cut(s)	2829
BseJI	GATNNNNATC	1 cut(s)	960
BseLI	CCNNNNNNNGG	4 cut(s)	203, 1040, 2273, 2360
BseMI	GCAATG	3 cut(s)	196, 1167, 1448
BseNI	ACTGG	9 cut(s)	227, 253, 1870, 2224, 2654, 2996, 3004, 3170, 3306
BseSI	GKGCMC	1 cut(s)	1428
BseX3I	CGGCCG	2 cut(s)	106, 2303
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	2 cut(s)	19, 201
Bsh1285I	CGRYCG	3 cut(s)	109, 842, 2306
BshFI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BshNI	GGYRCC	2 cut(s)	1425, 1989
BshVI	ATCGAT	1 cut(s)	2829
BsiEI	CGRYCG	3 cut(s)	109, 842, 2306
BsiHKAI	GWGCWC	5 cut(s)	17, 246, 1495, 1594, 2531
BsiHKCI	CYCGRG	1 cut(s)	1421
BsiSI	CCGG	5 cut(s)	129, 143, 259, 809, 2193
BslFI	GGGAC	3 cut(s)	787, 3234, 3312
BslI	CCNNNNNNNGG	4 cut(s)	203, 1040, 2273, 2360
BsmAI	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
BsmFI	GGGAC	3 cut(s)	787, 3234, 3312
BsmI	GAATGC	2 cut(s)	690, 1732
BsnI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BsoBI	CYCGRG	1 cut(s)	1421
Bsp119I	TTCGAA	2 cut(s)	290, 967
Bsp1286I	GDGCHC	7 cut(s)	17, 246, 1428, 1495, 1594, 2531, 3081
Bsp1720I	GCTNAGC	1 cut(s)	1782
Bsp19I	CCATGG	1 cut(s)	3081
BspACI	CCGC	8 cut(s)	132, 201, 204, 207, 221, 272, 2282, 2306
BspANI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BspDI	ATCGAT	1 cut(s)	2829
BspFNI	CGCG	2 cut(s)	19, 201
BspHI	TCATGA	1 cut(s)	913
BspMAI	CTGCAG	3 cut(s)	2140, 2409, 3229
BspPI	GGATC	7 cut(s)	845, 1136, 1479, 2049, 2474, 2501, 2514
BspT104I	TTCGAA	2 cut(s)	290, 967
BspT107I	GGYRCC	2 cut(s)	1425, 1989
BsrDI	GCAATG	3 cut(s)	196, 1167, 1448
BsrI	ACTGG	9 cut(s)	227, 253, 1870, 2224, 2654, 2996, 3004, 3170, 3306
BssNAI	GTATAC	1 cut(s)	1875
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	9 cut(s)	79, 981, 1034, 1442, 2037, 2502, 2541, 2739, 3081
Bst1107I	GTATAC	1 cut(s)	1875
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
Bst6I	CTCTTC	4 cut(s)	1215, 1570, 2433, 2586
BstAPI	GCANNNNNTGC	2 cut(s)	229, 1432
BstBI	TTCGAA	2 cut(s)	290, 967
BstC8I	GCNNGC	6 cut(s)	17, 270, 395, 536, 2228, 3261
BstDSI	CCRYGG	1 cut(s)	3081
BstENI	CCTNNNNNAGG	1 cut(s)	2358
BstFNI	CGCG	2 cut(s)	19, 201
BstH2I	RGCGCY	3 cut(s)	149, 269, 1306
BstHHI	GCGC	4 cut(s)	148, 268, 371, 1305
BstMAI	GTCTC	5 cut(s)	1554, 1692, 2457, 2653, 2709
BstMCI	CGRYCG	3 cut(s)	109, 842, 2306
BstNI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
BstNSI	RCATGY	4 cut(s)	538, 1234, 1466, 3263
BstSCI	CCNGG	7 cut(s)	46, 127, 237, 740, 1486, 2326, 2434
BstSFI	CTRYAG	5 cut(s)	618, 1668, 2136, 2405, 3225
BstSLI	GKGCMC	1 cut(s)	1428
BstUI	CGCG	2 cut(s)	19, 201
BstV2I	GAAGAC	6 cut(s)	559, 719, 1596, 1953, 2195, 3144
BstX2I	RGATCY	3 cut(s)	2116, 2479, 2506
BstXI	CCANNNNNNTGG	3 cut(s)	712, 1085, 1443
BstYI	RGATCY	3 cut(s)	2116, 2479, 2506
BstZ17I	GTATAC	1 cut(s)	1875
BstZI	CGGCCG	2 cut(s)	106, 2303
Bsu15I	ATCGAT	1 cut(s)	2829
Bsu36I	CCTNAGG	2 cut(s)	483, 2876
BsuRI	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
BsuTUI	ATCGAT	1 cut(s)	2829
BtgI	CCRYGG	1 cut(s)	3081
BtgZI	GCGATG	1 cut(s)	393
BtsI	GCAGTG	2 cut(s)	354, 1060
BtsIMutI	CAGTG	6 cut(s)	234, 354, 835, 1060, 1974, 3069
Cac8I	GCNNGC	6 cut(s)	17, 270, 395, 536, 2228, 3261
CaiI	CAGNNNCTG	4 cut(s)	1690, 1720, 1973, 2030
CciI	TCATGA	1 cut(s)	913
CfoI	GCGC	4 cut(s)	148, 268, 371, 1305
Cfr13I	GGNCC	6 cut(s)	126, 1617, 2279, 2331, 2845, 3248
ClaI	ATCGAT	1 cut(s)	2829
CseI	GACGC	2 cut(s)	527, 713
Csp6I	GTAC	5 cut(s)	256, 615, 2022, 2063, 2400
CviQI	GTAC	5 cut(s)	256, 615, 2022, 2063, 2400
DraI	TTTAAA	1 cut(s)	1824
DraIII	CACNNNGTG	1 cut(s)	902
DrdI	GACNNNNNNGTC	1 cut(s)	3053
DriI	GACNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	3053
EaeI	YGGCCR	3 cut(s)	106, 2303, 2437
EagI	CGGCCG	2 cut(s)	106, 2303
Eam1104I	CTCTTC	4 cut(s)	1215, 1570, 2433, 2586
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	4 cut(s)	1215, 1570, 2433, 2586
EciI	GGCGGA	4 cut(s)	147, 222, 287, 2271
Ecl136II	GAGCTC	3 cut(s)	15, 244, 2529
EclXI	CGGCCG	2 cut(s)	106, 2303
Eco130I	CCWWGG	9 cut(s)	79, 981, 1034, 1442, 2037, 2502, 2541, 2739, 3081
Eco24I	GRGCYC	4 cut(s)	17, 246, 2531, 3081
Eco32I	GATATC	2 cut(s)	1393, 2553
Eco47I	GGWCC	4 cut(s)	2279, 2331, 2845, 3248
Eco47III	AGCGCT	1 cut(s)	1304
Eco52I	CGGCCG	2 cut(s)	106, 2303
Eco53kI	GAGCTC	3 cut(s)	15, 244, 2529
Eco57I	CTGAAG	5 cut(s)	134, 569, 713, 2130, 3263
Eco81I	CCTNAGG	2 cut(s)	483, 2876
Eco88I	CYCGRG	1 cut(s)	1421
EcoICRI	GAGCTC	3 cut(s)	15, 244, 2529
EcoNI	CCTNNNNNAGG	1 cut(s)	2358
EcoO109I	RGGNCCY	3 cut(s)	1617, 2845, 3248
EcoRI	GAATTC	2 cut(s)	1210, 2196
EcoRII	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
EcoRV	GATATC	2 cut(s)	1393, 2553
EcoT14I	CCWWGG	9 cut(s)	79, 981, 1034, 1442, 2037, 2502, 2541, 2739, 3081
EcoT38I	GRGCYC	4 cut(s)	17, 246, 2531, 3081
ErhI	CCWWGG	9 cut(s)	79, 981, 1034, 1442, 2037, 2502, 2541, 2739, 3081
FalI	AAGNNNNNCTT	4 cut(s)	2307, 2339, 2883, 2915
FaqI	GGGAC	3 cut(s)	787, 3234, 3312
FauNDI	CATATG	1 cut(s)	2867
FbaI	TGATCA	2 cut(s)	1399, 3066
FblI	GTMKAC	1 cut(s)	1874
FriOI	GRGCYC	4 cut(s)	17, 246, 2531, 3081
FspBI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
GlaI	GCGC	4 cut(s)	147, 267, 370, 1304
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	660, 2637
HaeII	RGCGCY	3 cut(s)	149, 269, 1306
HaeIII	GGCC	9 cut(s)	25, 108, 127, 350, 808, 1619, 2305, 2439, 2874
HapII	CCGG	5 cut(s)	129, 143, 259, 809, 2193
HgaI	GACGC	2 cut(s)	527, 713
HhaI	GCGC	4 cut(s)	148, 268, 371, 1305
Hin6I	GCGC	4 cut(s)	146, 266, 369, 1303
HinP1I	GCGC	4 cut(s)	146, 266, 369, 1303
HincII	GTYRAC	2 cut(s)	337, 3340
HindII	GTYRAC	2 cut(s)	337, 3340
HindIII	AAGCTT	1 cut(s)	1624
HpaII	CCGG	5 cut(s)	129, 143, 259, 809, 2193
Hpy166II	GTNNAC	7 cut(s)	337, 700, 1151, 1246, 1355, 1875, 3340
Hpy8I	GTNNAC	7 cut(s)	337, 700, 1151, 1246, 1355, 1875, 3340
Hpy99I	CGWCG	2 cut(s)	77, 3335
HpyCH4IV	ACGT	8 cut(s)	281, 333, 676, 924, 1901, 2070, 2896, 3131
HpySE526I	ACGT	8 cut(s)	281, 333, 676, 924, 1901, 2070, 2896, 3131
HspAI	GCGC	4 cut(s)	146, 266, 369, 1303
KflI	GGGWCCC	1 cut(s)	3248
Ksp22I	TGATCA	2 cut(s)	1399, 3066
LmnI	GCTCC	9 cut(s)	134, 209, 241, 274, 1498, 1664, 1807, 3179, 3234
LweI	GCATC	8 cut(s)	883, 1709, 1713, 1771, 2567, 2672, 2725, 2969
MaeI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
MaeII	ACGT	8 cut(s)	281, 333, 676, 924, 1901, 2070, 2896, 3131
MaeIII	GTNAC	8 cut(s)	352, 402, 643, 669, 1458, 2246, 2571, 2995
MfeI	CAATTG	1 cut(s)	2295
MflI	RGATCY	3 cut(s)	2116, 2479, 2506
MhlI	GDGCHC	7 cut(s)	17, 246, 1428, 1495, 1594, 2531, 3081
MlsI	TGGCCA	1 cut(s)	2439
MluNI	TGGCCA	1 cut(s)	2439
MlyI	GAGTC	9 cut(s)	185, 656, 1466, 1556, 1877, 2041, 2279, 2579, 3023
MmeI	TCCRAC	4 cut(s)	1184, 1922, 2029, 3057
Mox20I	TGGCCA	1 cut(s)	2439
MroXI	GAANNNNTTC	2 cut(s)	973, 3016
MscI	TGGCCA	1 cut(s)	2439
MseI	TTAA	9 cut(s)	861, 1092, 1109, 1133, 1538, 1823, 2790, 2889, 3318
MslI	CAYNNNNRTG	2 cut(s)	695, 2857
Msp20I	TGGCCA	1 cut(s)	2439
MspA1I	CMGCKG	1 cut(s)	3092
MspI	CCGG	5 cut(s)	129, 143, 259, 809, 2193
MspR9I	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
MunI	CAATTG	1 cut(s)	2295
Mva1269I	GAATGC	2 cut(s)	690, 1732
MvaI	CCWGG	6 cut(s)	48, 239, 742, 1488, 2328, 2436
MvnI	CGCG	2 cut(s)	19, 201
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	3081
NdeI	CATATG	1 cut(s)	2867
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	5 cut(s)	352, 669, 1458, 2246, 2571
NspI	RCATGY	4 cut(s)	538, 1234, 1466, 3263
NspV	TTCGAA	2 cut(s)	290, 967
PaeI	GCATGC	2 cut(s)	538, 3263
PagI	TCATGA	1 cut(s)	913
PciI	ACATGT	2 cut(s)	1230, 1462
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 287, 930
PctI	GAATGC	2 cut(s)	690, 1732
PdmI	GAANNNNTTC	2 cut(s)	973, 3016
PfeI	GAWTC	5 cut(s)	91, 97, 956, 1319, 2033
Ple19I	CGATCG	1 cut(s)	842
PleI	GAGTC	9 cut(s)	184, 656, 1465, 1556, 1877, 2041, 2278, 2578, 3023
PpsI	GAGTC	9 cut(s)	184, 656, 1465, 1556, 1877, 2041, 2278, 2578, 3023
PpuMI	RGGWCCY	2 cut(s)	2845, 3248
PscI	ACATGT	2 cut(s)	1230, 1462
Psp124BI	GAGCTC	3 cut(s)	17, 246, 2531
Psp1406I	AACGTT	1 cut(s)	924
Psp5II	RGGWCCY	2 cut(s)	2845, 3248
Psp6I	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	6 cut(s)	46, 237, 740, 1486, 2326, 2434
PspPI	GGNCC	6 cut(s)	126, 1617, 2279, 2331, 2845, 3248
PspPPI	RGGWCCY	2 cut(s)	2845, 3248
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PstI	CTGCAG	3 cut(s)	2140, 2409, 3229
PstNI	CAGNNNCTG	4 cut(s)	1690, 1720, 1973, 2030
PsuI	RGATCY	3 cut(s)	2116, 2479, 2506
PvuI	CGATCG	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	3092
RsaI	GTAC	5 cut(s)	257, 616, 2023, 2064, 2401
RsaNI	GTAC	5 cut(s)	256, 615, 2022, 2063, 2400
RseI	CAYNNNNRTG	2 cut(s)	695, 2857
SacI	GAGCTC	3 cut(s)	17, 246, 2531
SaqAI	TTAA	9 cut(s)	861, 1092, 1109, 1133, 1538, 1823, 2790, 2889, 3318
Sau96I	GGNCC	6 cut(s)	126, 1617, 2279, 2331, 2845, 3248
ScaI	AGTACT	1 cut(s)	2401
SchI	GAGTC	9 cut(s)	185, 656, 1466, 1556, 1877, 2041, 2279, 2579, 3023
ScrFI	CCNGG	7 cut(s)	48, 129, 239, 742, 1488, 2328, 2436
SduI	GDGCHC	7 cut(s)	17, 246, 1428, 1495, 1594, 2531, 3081
SfaNI	GCATC	8 cut(s)	883, 1709, 1713, 1771, 2567, 2672, 2725, 2969
SfcI	CTRYAG	5 cut(s)	618, 1668, 2136, 2405, 3225
SfuI	TTCGAA	2 cut(s)	290, 967
SinI	GGWCC	4 cut(s)	2279, 2331, 2845, 3248
SmiMI	CAYNNNNRTG	2 cut(s)	695, 2857
SmlI	CTYRAG	5 cut(s)	1249, 1621, 1941, 2395, 3287
SmoI	CTYRAG	5 cut(s)	1249, 1621, 1941, 2395, 3287
SphI	GCATGC	2 cut(s)	538, 3263
SsiI	CCGC	8 cut(s)	132, 201, 204, 207, 221, 272, 2282, 2306
SspI	AATATT	3 cut(s)	442, 874, 1009
SspMI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
SstI	GAGCTC	3 cut(s)	17, 246, 2531
StyD4I	CCNGG	7 cut(s)	46, 127, 237, 740, 1486, 2326, 2434
StyI	CCWWGG	9 cut(s)	79, 981, 1034, 1442, 2037, 2502, 2541, 2739, 3081
TaiI	ACGT	8 cut(s)	284, 336, 679, 927, 1904, 2073, 2899, 3134
TaqI	TCGA	8 cut(s)	38, 290, 788, 967, 1014, 1550, 1912, 2829
TatI	WGTACW	2 cut(s)	2021, 2399
TauI	GCSGC	4 cut(s)	204, 207, 223, 2308
TfiI	GAWTC	5 cut(s)	91, 97, 956, 1319, 2033
Tru1I	TTAA	9 cut(s)	861, 1092, 1109, 1133, 1538, 1823, 2790, 2889, 3318
Tru9I	TTAA	9 cut(s)	861, 1092, 1109, 1133, 1538, 1823, 2790, 2889, 3318
TscAI	CASTG	6 cut(s)	234, 361, 835, 1060, 1974, 3069
TseFI	GTSAC	5 cut(s)	352, 669, 1458, 2246, 2571
Tsp45I	GTSAC	5 cut(s)	352, 669, 1458, 2246, 2571
TspDTI	ATGAA	6 cut(s)	683, 902, 1502, 2346, 2673, 3291
TspRI	CASTG	6 cut(s)	234, 361, 835, 1060, 1974, 3069
VpaK11BI	GGWCC	4 cut(s)	2279, 2331, 2845, 3248
XagI	CCTNNNNNAGG	1 cut(s)	2358
XapI	RAATTY	7 cut(s)	1210, 1836, 2104, 2196, 2239, 2980, 3280
XbaI	TCTAGA	2 cut(s)	653, 2455
XceI	RCATGY	4 cut(s)	538, 1234, 1466, 3263
XmiI	GTMKAC	1 cut(s)	1874
XmnI	GAANNNNTTC	2 cut(s)	973, 3016
XspI	CTAG	7 cut(s)	390, 654, 759, 888, 1197, 1284, 2456
ZrmI	AGTACT	1 cut(s)	2401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.