Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006763

Physical Location & Seq

Genomic Coordinates Forward (+)

16836969 .. 16844535

Gene Structure 7567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2808 bp

ATGCGTCATCTTTTTGGAACTTGGAAAGGTGTCTTCCCTGCTCAGACACTTCAGATGATTGAGAAAGAACTTGGGTTTGGTACTACAGCAAATGGTTCGTCCTCTGGAGTTACAACATCTAGACCAGACTCACAGTCACAACGTCCAGCACATAGCATTCATGTGAACCCCAAGTATTTGGAAAGGCAGCGTCTTCAGCAACCAACCAGGACAAAAGGGATGGCTAGTGATTTAGATGGGACTATGACAAACTCGATTGATGATTTAGACAGGCCGGACAGAGTAGCAAGTATCAGTGCTGGACGATCGTGGGTTGATCCTCCTGTTAAAATGCCTAATATTCAGCGTTCAACTAGAGATGCACTAAGTGAGCGTTTTCATGAGAAGAACGTTGGTGGCGAATATGACGACTTTGATTATGATTCTGATCTTCGAAGGAGTTCAACCTTGGGCATTGGACGATCTGGTGGGAATATTATCGAGCAAGGACATGATAAACCTTGGTATGGAGGTGGAAGCAGTGTTGCCGAAACAATTTCCAGCCAAAGAAATGGTTTTAACAAGAAGCATGGATTAAATTACTCAGCACCTAAATCATTAAATGCTGATCCTCGTTTACAGACACCACAAGCCATTGCAAATAGAAACAGGGGTGGGTTGTCTAGTAGTTGGAAGAATTCTGAGGAAGAGGAATACATGTGGGATGATGTGAACTCAAGATCAACAGATCACATAACCCCTGATCTTTCTAGTAATTCAAGAAAAGAGCGCTGGATTTCTGATGATTCAGAGAAATTGGGGTTTGTTGGTGGCTCTCGTAAACTGAAAAGAGTAAATGATTTGGACTTGGCTGCTGATATCGGTGATCAGAAAGATTTAGCTGCTCTCGGGCACCGTATGCCATCACCTTGGTCATTGCAAGAGTCACATGTTGTGGATCGGCTGACCTCTCCTGGTGCTCCTGTCATTAGTTCAGTTCATTCAGAGCGTTATGTTTCAAGTTTAAGTGGGTTATCGACAAGTGGAGACTCTTCTGTGGCAAGATTGGGAAATAGAGCACAGATGATGTCTTCTCGTATTGGGGCCTCAAGCTTTGGGTTGCCAACAAATGCTGCAACAGGGTCTAATGGAGCTGTAGGGAAACAGCAGCAGTCTCTGAGAGCTGCATCACCATCTGGACAGTTGCTGATGCACCAGCATTCTCCCTCACCTACATCAAAAATACAGCATCCCCGTAATTATTTGGCTGAGCAAGACCCTGCTCATGCTCCATCCCTTCCTCCTGATTTAAAAGTATCTGAAATTTTGGGAAAATCGGACTTAGGGTTGCATAGCCAGTATACTGAGGACTCTTTGCCTATTCCAACGTCCAATGTTCGATTAGGTGGCATGGCGAAATCACAGGCTCAAGATTTGAAGGCTTTGTCTTCCTCAGTGGCTGCCATCCAATCAAGGCACCACTATCCCTTCCGACAACAACAAGACAGTACAGAGCCTGAATCCTTGGATCAGACTCAGAAGCCCCATGTACCTCACGTTGCTACTTCTATAATGCCCTCAACAGTTAGAAATTCTGTATCAGATCTTTCTAATCTCCTTGCTGCAGAAACTTCAGGACAGTCAAGCACAAGTAGTTTGTTGGCTGCTGTTTTGAAGACCGGAATTCTCTCTAATAAATCAATTACTGGTAGCCTGCCCAATTTGAATTTTGGTGACAAGGAAAAAATGCCACCAGAGTCAGGTGGTCCGCCCCCCTTGCCAATTGGACGGCCGCCTACCAAAGTTGCACTTCCAGGGTCCAAAGTTGCAGCAGCAGCACCTTCATTAGGTCATCCTTCCCGTGAGAACTCGCCGACCACCTCAAGTACTCTGCAGAAGGTTGCACATCCACCTCTTCCACCTGGCCAACCACCTTTGTCTCTAGAGGGTAGCTCAACAGCAAAAGATCCAAATGTGGTGAAAAATGCCAAGGATCCAATATCAAACCTTTTGAGCTCTTTAGTTGCCAAGGGGTTGATATCTGCATCAAAGTCAGAGTCACCTACTCTTCTGCCATCTCAAAAGCCGATAGAGGTGCAAAGCCAGAACCTATCCACGACTACCACCACTACTGTCTCTCCAGTTTCAGCATCATCAAAAGTTCCTGTTTCATCTGAAATGGATGATGTGTCTCTCACAGAACAGGTGGCTAAACCCTCTGATGCCTTGGCTCAATCTACTAAGACAGAAAAAAGAAACCTAATAGGATTTGAGTTTAAGCCAGATAAAATCCGAGAATTACATCCATCTGTCATCGATGAGCTTTTTGAGGACCTTCCACATAAATGTAGCATATGTGGCCTCAGGCTCAAACTTAAAGAACGTCTTGATAGGCACTTGGAATGGCATACTTTGAAAACTCCCGAAGCAGATGGTTCCATTACGGCATCAAGGGGGTGGTATGCAAATTCAACCAACTGGGTTACTGGAAAGGCAGGAAGTTCTTCTGAACTTGACTCCAACAATTCAAACGACATGACTGTCAAGACAGTGATCAGTAATGAGCCCATGGTTCCAGCTGACGAAAGCCAATGTGCGTGTGTTATATGTGGTAATACGTTTGAAGACTTCTATTGTCAAGAAAGTGATGACTGGATGTTCAAAGGAGCTGTGTATATGACTGTTCCATCTGGGGATGGTGAGTTTGGAACTGCAGAGGGGAGCGTTCTGAAGGGTCCCATTGTGCATGCAAATTGTATGGATGAAAATTCACTTGAGGATTTGGGACTGGTTGCTACCCGAATTAAATTGGTAAGATCTTGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko04016 ko04075 map03015 map04016 map04075

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

935

Amino Acids

100.57

Weight (kDa)

6.45

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	847 - 915	9.1e-31	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36480 AT2G36480
fragaria_vesca	FvH4_6g17910 FvH4_6g17910
malus_domestica	MD12G1018100.v1.1 MD14G1016100.v1.1
prunus_persica	Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1 Prupe.7G117000_v2.0.a1
pyrus_communis	pycom12g01510 pycom14g01390
rosa_chinensis	RchiOBHm_Chr3g0472161
rosa_laevigata	RLG00000024100
rosa_multiflora	Rmu_sc0002532.1_g000029 Rmu_sc0019091.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409180
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174700 Rh3BG200000 Rh3CG191200 Rh3CG198500 Rh3DG174500
rosa_wichuraiana	Rw3G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2519
AccB1I	GGYRCC	2 cut(s)	891, 1455
AccI	GTMKAC	1 cut(s)	1340
AciI	CCGC	2 cut(s)	1748, 1772
AclI	AACGTT	1 cut(s)	390
AclWI	GGATC	7 cut(s)	311, 602, 945, 1515, 1940, 1967, 1980
AcoI	YGGCCR	2 cut(s)	1769, 1903
AcsI	RAATTY	7 cut(s)	676, 1302, 1570, 1662, 1705, 2446, 2746
AcuI	CTGAAG	4 cut(s)	35, 179, 1596, 2729
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	4 cut(s)	82, 1489, 1530, 1867
AfeI	AGCGCT	1 cut(s)	770
AfiI	CCNNNNNNNGG	3 cut(s)	506, 1739, 1826
AflIII	ACRYGT	2 cut(s)	696, 928
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	4 cut(s)	206, 952, 1792, 1900
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	9 cut(s)	881, 1092, 1133, 1163, 1932, 1995, 2302, 2558, 2648
AluI	AGCT	9 cut(s)	881, 1092, 1133, 1163, 1932, 1995, 2302, 2558, 2648
Alw21I	GWGCWC	3 cut(s)	961, 1060, 1997
Alw26I	GTCTC	5 cut(s)	1020, 1158, 1923, 2119, 2175
AlwI	GGATC	7 cut(s)	311, 602, 945, 1515, 1940, 1967, 1980
AlwNI	CAGNNNCTG	4 cut(s)	1156, 1186, 1439, 1496
Ama87I	CYCGRG	1 cut(s)	887
Aor51HI	AGCGCT	1 cut(s)	770
AoxI	GGCC	5 cut(s)	272, 1083, 1769, 1903, 2338
ApoI	RAATTY	7 cut(s)	676, 1302, 1570, 1662, 1705, 2446, 2746
ArsI	GACNNNNNNTTYG	4 cut(s)	83, 115, 2021, 2053
Asp700I	GAANNNNTTC	2 cut(s)	439, 2482
AspLEI	GCGC	1 cut(s)	771
AspS9I	GGNCC	5 cut(s)	1083, 1745, 1797, 2311, 2714
AsuHPI	GGTGA	8 cut(s)	875, 897, 1161, 1200, 1724, 1969, 2031, 2690
AsuII	TTCGAA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	887
AvaII	GGWCC	4 cut(s)	1745, 1797, 2311, 2714
AxyI	CCTNAGG	1 cut(s)	2342
BaeGI	GKGCMC	1 cut(s)	894
BalI	TGGCCA	1 cut(s)	1905
BamHI	GGATCC	1 cut(s)	1972
BanI	GGYRCC	2 cut(s)	891, 1455
BanII	GRGCYC	2 cut(s)	1997, 2547
BbsI	GAAGAC	6 cut(s)	25, 185, 1062, 1419, 1661, 2610
Bbv12I	GWGCWC	3 cut(s)	961, 1060, 1997
BceAI	ACGGC	2 cut(s)	1784, 2439
BcgI	CGANNNNNNTGC	4 cut(s)	78, 112, 2056, 2090
BciT130I	CCWGG	4 cut(s)	208, 954, 1794, 1902
BclI	TGATCA	2 cut(s)	865, 2532
BcoDI	GTCTC	5 cut(s)	1020, 1158, 1923, 2119, 2175
BfaI	CTAG	6 cut(s)	120, 225, 354, 663, 750, 1922
BfmI	CTRYAG	5 cut(s)	84, 1134, 1602, 1871, 2691
BfoI	RGCGCY	1 cut(s)	772
BglII	AGATCT	2 cut(s)	1582, 2795
BlpI	GCTNAGC	1 cut(s)	1248
BmcAI	AGTACT	1 cut(s)	1867
Bme1390I	CCNGG	4 cut(s)	208, 954, 1794, 1902
Bme18I	GGWCC	4 cut(s)	1745, 1797, 2311, 2714
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	5 cut(s)	1083, 1745, 1797, 2311, 2714
BmiI	GGNNCC	9 cut(s)	893, 1084, 1457, 1798, 1974, 2416, 2553, 2715, 2716
BmrFI	CCNGG	4 cut(s)	208, 954, 1794, 1902
BmrI	ACTGGG	1 cut(s)	2467
BmsI	GCATC	8 cut(s)	349, 1175, 1179, 1237, 2033, 2138, 2191, 2435
BmuI	ACTGGG	1 cut(s)	2467
BpiI	GAAGAC	6 cut(s)	25, 185, 1062, 1419, 1661, 2610
BplI	GAGNNNNNCTC	2 cut(s)	1916, 1948
BpmI	CTGGAG	2 cut(s)	126, 2103
Bpu1102I	GCTNAGC	1 cut(s)	1248
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	5 cut(s)	700, 1072, 1392, 1846, 2774
Bsa29I	ATCGAT	1 cut(s)	2295
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	9 cut(s)	447, 500, 908, 1503, 1793, 1968, 2007, 2205, 2547
BsaWI	WCCGGW	1 cut(s)	1658
BsaXI	ACNNNNNCTCC	2 cut(s)	2101, 2131
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 1739, 1826
Bse1I	ACTGG	7 cut(s)	1336, 1690, 2120, 2462, 2470, 2636, 2772
Bse21I	CCTNAGG	1 cut(s)	2342
Bse3DI	GCAATG	2 cut(s)	633, 914
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	4 cut(s)	208, 954, 1794, 1902
BseCI	ATCGAT	1 cut(s)	2295
BseDI	CCNNGG	9 cut(s)	447, 500, 908, 1503, 1793, 1968, 2007, 2205, 2547
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	506, 1739, 1826
BseMI	GCAATG	2 cut(s)	633, 914
BseMII	CTCAG	9 cut(s)	56, 597, 672, 1148, 1239, 1335, 1446, 1529, 2356
BseNI	ACTGG	7 cut(s)	1336, 1690, 2120, 2462, 2470, 2636, 2772
BseSI	GKGCMC	1 cut(s)	894
BseX3I	CGGCCG	1 cut(s)	1769
Bsh1285I	CGRYCG	2 cut(s)	308, 1772
BshFI	GGCC	5 cut(s)	274, 1085, 1771, 1905, 2340
BshNI	GGYRCC	2 cut(s)	891, 1455
BshVI	ATCGAT	1 cut(s)	2295
BsiEI	CGRYCG	2 cut(s)	308, 1772
BsiHKAI	GWGCWC	3 cut(s)	961, 1060, 1997
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	2 cut(s)	275, 1659
BslFI	GGGAC	3 cut(s)	253, 2700, 2778
BslI	CCNNNNNNNGG	3 cut(s)	506, 1739, 1826
BsmAI	GTCTC	5 cut(s)	1020, 1158, 1923, 2119, 2175
BsmFI	GGGAC	3 cut(s)	253, 2700, 2778
BsmI	GAATGC	2 cut(s)	156, 1198
BsnI	GGCC	5 cut(s)	274, 1085, 1771, 1905, 2340
BsoBI	CYCGRG	1 cut(s)	887
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	5 cut(s)	894, 961, 1060, 1997, 2547
Bsp1720I	GCTNAGC	1 cut(s)	1248
Bsp19I	CCATGG	1 cut(s)	2547
BspACI	CCGC	2 cut(s)	1748, 1772
BspANI	GGCC	5 cut(s)	274, 1085, 1771, 1905, 2340
BspCNI	CTCAG	9 cut(s)	55, 596, 673, 1149, 1240, 1336, 1445, 1528, 2355
BspDI	ATCGAT	1 cut(s)	2295
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	9 cut(s)	893, 1084, 1457, 1798, 1974, 2416, 2553, 2715, 2716
BspMAI	CTGCAG	3 cut(s)	1606, 1875, 2695
BspPI	GGATC	7 cut(s)	311, 602, 945, 1515, 1940, 1967, 1980
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	2 cut(s)	891, 1455
BsrDI	GCAATG	2 cut(s)	633, 914
BsrI	ACTGG	7 cut(s)	1336, 1690, 2120, 2462, 2470, 2636, 2772
BssECI	CCNNGG	9 cut(s)	447, 500, 908, 1503, 1793, 1968, 2007, 2205, 2547
BssNAI	GTATAC	1 cut(s)	1341
BssT1I	CCWWGG	8 cut(s)	447, 500, 908, 1503, 1968, 2007, 2205, 2547
Bst1107I	GTATAC	1 cut(s)	1341
Bst2UI	CCWGG	4 cut(s)	208, 954, 1794, 1902
Bst6I	CTCTTC	4 cut(s)	681, 1036, 1899, 2052
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	1694, 2727
BstDSI	CCRYGG	1 cut(s)	2547
BstENI	CCTNNNNNAGG	1 cut(s)	1824
BstH2I	RGCGCY	1 cut(s)	772
BstHHI	GCGC	1 cut(s)	771
BstMAI	GTCTC	5 cut(s)	1020, 1158, 1923, 2119, 2175
BstMCI	CGRYCG	2 cut(s)	308, 1772
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 898, 1756, 1814, 2337
BstNI	CCWGG	4 cut(s)	208, 954, 1794, 1902
BstNSI	RCATGY	3 cut(s)	700, 932, 2729
BstSCI	CCNGG	4 cut(s)	206, 952, 1792, 1900
BstSFI	CTRYAG	5 cut(s)	84, 1134, 1602, 1871, 2691
BstSLI	GKGCMC	1 cut(s)	894
BstV2I	GAAGAC	6 cut(s)	25, 185, 1062, 1419, 1661, 2610
BstX2I	RGATCY	4 cut(s)	1582, 1945, 1972, 2795
BstXI	CCANNNNNNTGG	3 cut(s)	178, 551, 909
BstYI	RGATCY	4 cut(s)	1582, 1945, 1972, 2795
BstZ17I	GTATAC	1 cut(s)	1341
BstZI	CGGCCG	1 cut(s)	1769
Bsu15I	ATCGAT	1 cut(s)	2295
Bsu36I	CCTNAGG	1 cut(s)	2342
BsuRI	GGCC	5 cut(s)	274, 1085, 1771, 1905, 2340
BsuTUI	ATCGAT	1 cut(s)	2295
BtgI	CCRYGG	1 cut(s)	2547
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	4 cut(s)	301, 526, 1440, 2535
Cac8I	GCNNGC	2 cut(s)	1694, 2727
CaiI	CAGNNNCTG	4 cut(s)	1156, 1186, 1439, 1496
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	771
Cfr13I	GGNCC	5 cut(s)	1083, 1745, 1797, 2311, 2714
ClaI	ATCGAT	1 cut(s)	2295
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	4 cut(s)	81, 1488, 1529, 1866
CviQI	GTAC	4 cut(s)	81, 1488, 1529, 1866
DraI	TTTAAA	1 cut(s)	1290
DraIII	CACNNNGTG	1 cut(s)	368
DrdI	GACNNNNNNGTC	1 cut(s)	2519
DriI	GACNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	2519
EaeI	YGGCCR	2 cut(s)	1769, 1903
EagI	CGGCCG	1 cut(s)	1769
Eam1104I	CTCTTC	4 cut(s)	681, 1036, 1899, 2052
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	4 cut(s)	681, 1036, 1899, 2052
EciI	GGCGGA	1 cut(s)	1737
Ecl136II	GAGCTC	1 cut(s)	1995
EclXI	CGGCCG	1 cut(s)	1769
Eco130I	CCWWGG	8 cut(s)	447, 500, 908, 1503, 1968, 2007, 2205, 2547
Eco24I	GRGCYC	2 cut(s)	1997, 2547
Eco32I	GATATC	2 cut(s)	859, 2019
Eco47I	GGWCC	4 cut(s)	1745, 1797, 2311, 2714
Eco47III	AGCGCT	1 cut(s)	770
Eco52I	CGGCCG	1 cut(s)	1769
Eco53kI	GAGCTC	1 cut(s)	1995
Eco57I	CTGAAG	4 cut(s)	35, 179, 1596, 2729
Eco81I	CCTNAGG	1 cut(s)	2342
Eco88I	CYCGRG	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	1995
EcoNI	CCTNNNNNAGG	1 cut(s)	1824
EcoO109I	RGGNCCY	3 cut(s)	1083, 2311, 2714
EcoRI	GAATTC	2 cut(s)	676, 1662
EcoRII	CCWGG	4 cut(s)	206, 952, 1792, 1900
EcoRV	GATATC	2 cut(s)	859, 2019
EcoT14I	CCWWGG	8 cut(s)	447, 500, 908, 1503, 1968, 2007, 2205, 2547
EcoT38I	GRGCYC	2 cut(s)	1997, 2547
ErhI	CCWWGG	8 cut(s)	447, 500, 908, 1503, 1968, 2007, 2205, 2547
FalI	AAGNNNNNCTT	4 cut(s)	1773, 1805, 2349, 2381
FaqI	GGGAC	3 cut(s)	253, 2700, 2778
FauNDI	CATATG	1 cut(s)	2333
FbaI	TGATCA	2 cut(s)	865, 2532
FblI	GTMKAC	1 cut(s)	1340
FriOI	GRGCYC	2 cut(s)	1997, 2547
FspBI	CTAG	6 cut(s)	120, 225, 354, 663, 750, 1922
GlaI	GCGC	1 cut(s)	770
GsuI	CTGGAG	2 cut(s)	126, 2103
HaeII	RGCGCY	1 cut(s)	772
HaeIII	GGCC	5 cut(s)	274, 1085, 1771, 1905, 2340
HapII	CCGG	2 cut(s)	275, 1659
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	771
Hin6I	GCGC	1 cut(s)	769
HinP1I	GCGC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	1090
HpaII	CCGG	2 cut(s)	275, 1659
HphI	GGTGA	8 cut(s)	875, 897, 1161, 1200, 1724, 1969, 2031, 2690
Hpy166II	GTNNAC	5 cut(s)	166, 617, 712, 821, 1341
Hpy8I	GTNNAC	5 cut(s)	166, 617, 712, 821, 1341
HpyAV	CCTTC	9 cut(s)	429, 1286, 1411, 1477, 1830, 1845, 1870, 2324, 2704
HpyCH4IV	ACGT	6 cut(s)	142, 390, 1367, 1536, 2362, 2597
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 898, 1756, 1814, 2337
HpySE526I	ACGT	6 cut(s)	142, 390, 1367, 1536, 2362, 2597
HspAI	GCGC	1 cut(s)	769
KflI	GGGWCCC	1 cut(s)	2714
Ksp22I	TGATCA	2 cut(s)	865, 2532
LmnI	GCTCC	5 cut(s)	964, 1130, 1273, 2645, 2700
LweI	GCATC	8 cut(s)	349, 1175, 1179, 1237, 2033, 2138, 2191, 2435
MaeI	CTAG	6 cut(s)	120, 225, 354, 663, 750, 1922
MaeII	ACGT	6 cut(s)	142, 390, 1367, 1536, 2362, 2597
MaeIII	GTNAC	6 cut(s)	109, 135, 924, 1712, 2037, 2461
MfeI	CAATTG	1 cut(s)	1761
MflI	RGATCY	4 cut(s)	1582, 1945, 1972, 2795
MhlI	GDGCHC	5 cut(s)	894, 961, 1060, 1997, 2547
MlsI	TGGCCA	1 cut(s)	1905
MluNI	TGGCCA	1 cut(s)	1905
MlyI	GAGTC	8 cut(s)	122, 932, 1022, 1343, 1507, 1745, 2045, 2489
MmeI	TCCRAC	4 cut(s)	650, 1388, 1495, 2523
Mox20I	TGGCCA	1 cut(s)	1905
MroXI	GAANNNNTTC	2 cut(s)	439, 2482
MscI	TGGCCA	1 cut(s)	1905
MseI	TTAA	9 cut(s)	327, 558, 575, 599, 1004, 1289, 2256, 2355, 2784
MslI	CAYNNNNRTG	2 cut(s)	161, 2323
Msp20I	TGGCCA	1 cut(s)	1905
MspA1I	CMGCKG	1 cut(s)	2558
MspI	CCGG	2 cut(s)	275, 1659
MspR9I	CCNGG	4 cut(s)	208, 954, 1794, 1902
MunI	CAATTG	1 cut(s)	1761
Mva1269I	GAATGC	2 cut(s)	156, 1198
MvaI	CCWGG	4 cut(s)	208, 954, 1794, 1902
MwoI	GCNNNNNNNGC	5 cut(s)	196, 898, 1756, 1814, 2337
NcoI	CCATGG	1 cut(s)	2547
NdeI	CATATG	1 cut(s)	2333
NlaIV	GGNNCC	9 cut(s)	893, 1084, 1457, 1798, 1974, 2416, 2553, 2715, 2716
NmuCI	GTSAC	4 cut(s)	135, 924, 1712, 2037
NspI	RCATGY	3 cut(s)	700, 932, 2729
NspV	TTCGAA	1 cut(s)	433
PaeI	GCATGC	1 cut(s)	2729
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	2 cut(s)	696, 928
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	2 cut(s)	156, 1198
PdmI	GAANNNNTTC	2 cut(s)	439, 2482
PfeI	GAWTC	3 cut(s)	422, 785, 1499
Ple19I	CGATCG	1 cut(s)	308
PleI	GAGTC	8 cut(s)	122, 931, 1022, 1343, 1507, 1744, 2044, 2489
PpsI	GAGTC	8 cut(s)	122, 931, 1022, 1343, 1507, 1744, 2044, 2489
PpuMI	RGGWCCY	2 cut(s)	2311, 2714
PscI	ACATGT	2 cut(s)	696, 928
Psp124BI	GAGCTC	1 cut(s)	1997
Psp1406I	AACGTT	1 cut(s)	390
Psp5II	RGGWCCY	2 cut(s)	2311, 2714
Psp6I	CCWGG	4 cut(s)	206, 952, 1792, 1900
PspGI	CCWGG	4 cut(s)	206, 952, 1792, 1900
PspN4I	GGNNCC	9 cut(s)	893, 1084, 1457, 1798, 1974, 2416, 2553, 2715, 2716
PspPI	GGNCC	5 cut(s)	1083, 1745, 1797, 2311, 2714
PspPPI	RGGWCCY	2 cut(s)	2311, 2714
PstI	CTGCAG	3 cut(s)	1606, 1875, 2695
PstNI	CAGNNNCTG	4 cut(s)	1156, 1186, 1439, 1496
PsuI	RGATCY	4 cut(s)	1582, 1945, 1972, 2795
PvuI	CGATCG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	2558
RsaI	GTAC	4 cut(s)	82, 1489, 1530, 1867
RsaNI	GTAC	4 cut(s)	81, 1488, 1529, 1866
RseI	CAYNNNNRTG	2 cut(s)	161, 2323
SacI	GAGCTC	1 cut(s)	1997
SaqAI	TTAA	9 cut(s)	327, 558, 575, 599, 1004, 1289, 2256, 2355, 2784
Sau96I	GGNCC	5 cut(s)	1083, 1745, 1797, 2311, 2714
ScaI	AGTACT	1 cut(s)	1867
SchI	GAGTC	8 cut(s)	122, 932, 1022, 1343, 1507, 1745, 2045, 2489
ScrFI	CCNGG	4 cut(s)	208, 954, 1794, 1902
SduI	GDGCHC	5 cut(s)	894, 961, 1060, 1997, 2547
SfaNI	GCATC	8 cut(s)	349, 1175, 1179, 1237, 2033, 2138, 2191, 2435
SfcI	CTRYAG	5 cut(s)	84, 1134, 1602, 1871, 2691
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	4 cut(s)	1745, 1797, 2311, 2714
SmiMI	CAYNNNNRTG	2 cut(s)	161, 2323
SmlI	CTYRAG	5 cut(s)	715, 1087, 1407, 1861, 2753
SmoI	CTYRAG	5 cut(s)	715, 1087, 1407, 1861, 2753
SphI	GCATGC	1 cut(s)	2729
SsiI	CCGC	2 cut(s)	1748, 1772
SspI	AATATT	2 cut(s)	340, 475
SspMI	CTAG	6 cut(s)	120, 225, 354, 663, 750, 1922
SstI	GAGCTC	1 cut(s)	1997
StyD4I	CCNGG	4 cut(s)	206, 952, 1792, 1900
StyI	CCWWGG	8 cut(s)	447, 500, 908, 1503, 1968, 2007, 2205, 2547
TaiI	ACGT	6 cut(s)	145, 393, 1370, 1539, 2365, 2600
TaqI	TCGA	6 cut(s)	254, 433, 480, 1016, 1378, 2295
TatI	WGTACW	2 cut(s)	1487, 1865
TauI	GCSGC	1 cut(s)	1774
TfiI	GAWTC	3 cut(s)	422, 785, 1499
Tru1I	TTAA	9 cut(s)	327, 558, 575, 599, 1004, 1289, 2256, 2355, 2784
Tru9I	TTAA	9 cut(s)	327, 558, 575, 599, 1004, 1289, 2256, 2355, 2784
TscAI	CASTG	4 cut(s)	301, 526, 1440, 2535
TseFI	GTSAC	4 cut(s)	135, 924, 1712, 2037
Tsp45I	GTSAC	4 cut(s)	135, 924, 1712, 2037
TspDTI	ATGAA	7 cut(s)	149, 368, 968, 1812, 2139, 2757, 2793
TspRI	CASTG	4 cut(s)	301, 526, 1440, 2535
VpaK11BI	GGWCC	4 cut(s)	1745, 1797, 2311, 2714
XagI	CCTNNNNNAGG	1 cut(s)	1824
XapI	RAATTY	7 cut(s)	676, 1302, 1570, 1662, 1705, 2446, 2746
XbaI	TCTAGA	2 cut(s)	119, 1921
XceI	RCATGY	3 cut(s)	700, 932, 2729
XmiI	GTMKAC	1 cut(s)	1340
XmnI	GAANNNNTTC	2 cut(s)	439, 2482
XspI	CTAG	6 cut(s)	120, 225, 354, 663, 750, 1922
ZrmI	AGTACT	1 cut(s)	1867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.