Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

15639773 .. 15641773

Gene Structure 2001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGATTGCTCTCTCGTCGTCGTCGACGATCACGTCCATTACTCTGCAGCCGAAGCTGAAGACGATTCATGGATTAGGGACAGTACTTCCTGGTTATTCGGTCAAATCTCACTTTCGTAGTGTCTCTCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGAGCTTCTTCCGGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAGGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAAGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

248

Amino Acids

26.6

Weight (kDa)

8.78

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	74 - 167	7.4e-08	AhpC/TSA family
AhpC-TSA_2	PF13911	115 - 231	3.8e-20	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	176
AciI	CCGC	5 cut(s)	464, 574, 621, 636, 710
AclWI	GGATC	3 cut(s)	461, 474, 718
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	2 cut(s)	87, 199
AgsI	TTSAA	2 cut(s)	614, 719
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	91, 655
AluBI	AGCT	6 cut(s)	58, 170, 182, 203, 338, 536
AluI	AGCT	6 cut(s)	58, 170, 182, 203, 338, 536
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	461, 474, 718
Aor13HI	TCCGGA	1 cut(s)	176
AoxI	GGCC	3 cut(s)	156, 282, 652
ApeKI	GCWGC	3 cut(s)	49, 335, 536
AspLEI	GCGC	2 cut(s)	143, 493
AspS9I	GGNCC	2 cut(s)	398, 653
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BamHI	GGATCC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	61, 347, 523
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	128, 269
BciT130I	CCWGG	2 cut(s)	93, 657
BciVI	GTATCC	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	212, 551
BfmI	CTRYAG	1 cut(s)	47
BfoI	RGCGCY	2 cut(s)	144, 494
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	50, 336, 537, 622
BlsI	GCNGC	4 cut(s)	51, 337, 538, 623
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	3 cut(s)	93, 402, 657
Bme18I	GGWCC	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	398, 653
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	93, 402, 657
BmsI	GCATC	4 cut(s)	358, 380, 417, 488
BpiI	GAAGAC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	144, 655, 656
BsaWI	WCCGGW	2 cut(s)	164, 176
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	587
BseAI	TCCGGA	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	93, 657
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	144, 655, 656
BseGI	GGATG	3 cut(s)	317, 364, 373
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	3 cut(s)	61, 347, 523
BshFI	GGCC	3 cut(s)	158, 284, 654
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	5 cut(s)	133, 165, 177, 401, 699
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	158, 284, 654
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp13I	TCCGGA	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	30, 393, 412, 466, 723
BspACI	CCGC	5 cut(s)	464, 574, 621, 636, 710
BspANI	GGCC	3 cut(s)	158, 284, 654
BspDI	ATCGAT	1 cut(s)	411
BspEI	TCCGGA	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	3 cut(s)	461, 474, 718
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	144, 655, 656
BssMI	GATC	5 cut(s)	30, 393, 412, 466, 723
Bst2UI	CCWGG	2 cut(s)	93, 657
Bst4CI	ACNGT	3 cut(s)	85, 220, 610
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	2 cut(s)	626, 652
BstDEI	CTNAG	2 cut(s)	441, 643
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	317, 364, 373
BstH2I	RGCGCY	2 cut(s)	144, 494
BstHHI	GCGC	2 cut(s)	143, 493
BstKTI	GATC	5 cut(s)	33, 396, 415, 469, 726
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	30, 393, 412, 466, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 290, 344, 740
BstNI	CCWGG	2 cut(s)	93, 657
BstSCI	CCNGG	3 cut(s)	91, 400, 655
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	61, 347, 523
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	466, 723
BstYI	RGATCY	2 cut(s)	466, 723
Bsu15I	ATCGAT	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	3 cut(s)	158, 284, 654
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	317, 364, 373
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	626, 652
CfoI	GCGC	2 cut(s)	143, 493
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	398, 653
ClaI	ATCGAT	1 cut(s)	411
CpoI	CGGWCCG	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	86, 198
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	2 cut(s)	71, 562
CviQI	GTAC	2 cut(s)	86, 198
DdeI	CTNAG	2 cut(s)	441, 643
DpnI	GATC	5 cut(s)	32, 395, 414, 468, 725
DpnII	GATC	5 cut(s)	30, 393, 412, 466, 723
DraI	TTTAAA	1 cut(s)	448
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
EciI	GGCGGA	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	91, 655
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	2 cut(s)	74, 565
FaiI	YATR	9 cut(s)	72, 268, 462, 484, 542, 563, 599, 678, 680
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	70, 561
FauI	CCCGC	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	50, 336, 537, 622
FokI	GGATG	3 cut(s)	324, 371, 380
Fsp4HI	GCNGC	4 cut(s)	50, 336, 537, 622
FspBI	CTAG	2 cut(s)	212, 551
GlaI	GCGC	2 cut(s)	142, 492
GluI	GCNGC	4 cut(s)	50, 336, 537, 622
HaeII	RGCGCY	2 cut(s)	144, 494
HaeIII	GGCC	3 cut(s)	158, 284, 654
HapII	CCGG	5 cut(s)	133, 165, 177, 401, 699
HhaI	GCGC	2 cut(s)	143, 493
Hin1II	CATG	2 cut(s)	74, 565
Hin6I	GCGC	2 cut(s)	141, 491
HinP1I	GCGC	2 cut(s)	141, 491
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	5 cut(s)	67, 206, 250, 554, 639
HpaII	CCGG	5 cut(s)	133, 165, 177, 401, 699
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	5 cut(s)	255, 262, 327, 393, 398
Hpy188III	TCNNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	4 cut(s)	22, 25, 28, 31
HpyAV	CCTTC	3 cut(s)	274, 349, 560
HpyCH4III	ACNGT	3 cut(s)	85, 220, 610
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	49, 293, 347, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 290, 344, 740
HpyF3I	CTNAG	2 cut(s)	441, 643
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	74, 565
HspAI	GCGC	2 cut(s)	141, 491
Kpn2I	TCCGGA	1 cut(s)	176
Kzo9I	GATC	5 cut(s)	30, 393, 412, 466, 723
LmnI	GCTCC	2 cut(s)	167, 179
Lsp1109I	GCAGC	3 cut(s)	61, 347, 523
LweI	GCATC	4 cut(s)	358, 380, 417, 488
MaeI	CTAG	2 cut(s)	212, 551
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	32, 395, 414, 468, 725
MboI	GATC	5 cut(s)	30, 393, 412, 466, 723
MboII	GAAGA	4 cut(s)	73, 165, 556, 731
MflI	RGATCY	2 cut(s)	466, 723
MhlI	GDGCHC	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	233, 448, 481, 611
Mph1103I	ATGCAT	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	176
MseI	TTAA	2 cut(s)	447, 729
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	5 cut(s)	133, 165, 177, 401, 699
MspR9I	CCNGG	3 cut(s)	93, 402, 657
MvaI	CCWGG	2 cut(s)	93, 657
MwoI	GCNNNNNNNGC	4 cut(s)	55, 290, 344, 740
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	5 cut(s)	30, 393, 412, 466, 723
NlaIII	CATG	2 cut(s)	74, 565
NlaIV	GGNNCC	1 cut(s)	468
NsiI	ATGCAT	1 cut(s)	373
PasI	CCCWGGG	1 cut(s)	656
PcsI	WCGNNNNNNNCGW	4 cut(s)	23, 26, 32, 483
PfeI	GAWTC	4 cut(s)	67, 206, 250, 639
PkrI	GCNGC	4 cut(s)	51, 337, 538, 623
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	91, 655
PspGI	CCWGG	2 cut(s)	91, 655
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	398, 653
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	2 cut(s)	466, 723
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	87, 199
RsaNI	GTAC	2 cut(s)	86, 198
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	447, 729
SatI	GCNGC	4 cut(s)	50, 336, 537, 622
Sau3AI	GATC	5 cut(s)	30, 393, 412, 466, 723
Sau96I	GGNCC	2 cut(s)	398, 653
ScaI	AGTACT	1 cut(s)	87
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	3 cut(s)	93, 402, 657
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	9 cut(s)	38, 60, 172, 184, 199, 205, 340, 459, 538
SfaNI	GCATC	4 cut(s)	358, 380, 417, 488
SfcI	CTRYAG	1 cut(s)	47
SgrDI	CGTCGACG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SsiI	CCGC	5 cut(s)	464, 574, 621, 636, 710
SspMI	CTAG	2 cut(s)	212, 551
StyD4I	CCNGG	3 cut(s)	91, 400, 655
TaaI	ACNGT	3 cut(s)	85, 220, 610
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	26, 411
TaqII	GACCGA	1 cut(s)	91
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	4 cut(s)	67, 206, 250, 639
Tru1I	TTAA	2 cut(s)	447, 729
Tru9I	TTAA	2 cut(s)	447, 729
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	3 cut(s)	49, 335, 536
TspDTI	ATGAA	3 cut(s)	59, 557, 614
TspRI	CASTG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	2 cut(s)	212, 551
ZrmI	AGTACT	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.