Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

24174853 .. 24177827

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G244000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGTTACTCTCTCTGCAACACTATACTCCACCTCACTCCCTCCAAAGAGGAACACCAATTGCCCCTCGACACCTGTAATTTCGAATCTGAATATCGGCAGCCTTCTTCCCAATCTCAATAGCTGCAAGAGACTGATCAAATTCTCACCGCGGCAAAGCCACGTCGTAGGATCTGCAGTCTCTGGCTCTCCAGGGACCGAGTCTTCTTTGAACGGTGAAGATGCAGCGAGTTTATTGGAGACGGTGAAGGTGTTTGATTTGAATGGAAATGGAATTCCGATTTCGGATTTGTGGAAAGATAGGACAGCTGTCATCGCATTTGCCCGCCATTTCGGATGCGTATTTTGCCGCAAACGGGCTGACTATCTTGCATCAAAGAAGGATATAATGGATGCATCTGGTGTGGCACTTGTTTTGATTGGACCTGGTAGCATTGATCAGGGAAAAGCATTCGCTGAGCAAACAAAGTTCAAAGGAGAAGTTTATGCAGATCCGAGTCACTCATCATACGAGGCATTGAGATTTGTTTCTGGGGTCTTAACCACATTTACTCCCAAAGCAGGTCTTAAGATAATAGAGTTGTACATGGAGGGTTACCGGCAAGACTGGAAACTTTCTTTTGAACAGGACACCGTGGCCAGAGGCGGCTGGCAGCAAGGTGGAATTCTAGTTGCGGGTCCTGGTAAAAGCAACATCCTGTACATACACAAGGATAAAGAAGCCGGGGATGATCCAGATATCAAGGATATACTAAAAGCATGTTGTGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

259

Amino Acids

27.85

Weight (kDa)

8.15

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	554
AccII	CGCG	1 cut(s)	154
AciI	CCGC	7 cut(s)	5, 152, 154, 328, 352, 648, 677
AclWI	GGATC	3 cut(s)	181, 488, 728
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	3 cut(s)	143, 276, 666
AfaI	GTAC	2 cut(s)	587, 704
AfiI	CCNNNNNNNGG	2 cut(s)	358, 563
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	214, 265, 475, 626
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	193, 427, 682
AluBI	AGCT	2 cut(s)	126, 311
AluI	AGCT	2 cut(s)	126, 311
Alw26I	GTCTC	3 cut(s)	127, 187, 236
AlwI	GGATC	3 cut(s)	181, 488, 728
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	4 cut(s)	102, 126, 227, 655
ApoI	RAATTY	3 cut(s)	143, 276, 666
AspS9I	GGNCC	3 cut(s)	198, 425, 680
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	3 cut(s)	141, 230, 259
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	3 cut(s)	198, 425, 680
BalI	TGGCCA	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	113, 114, 239, 667
BciT130I	CCWGG	3 cut(s)	195, 429, 684
BclI	TGATCA	2 cut(s)	138, 439
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	3 cut(s)	127, 187, 236
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	554
BisI	GCNGC	7 cut(s)	103, 127, 155, 228, 352, 649, 656
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	7 cut(s)	104, 128, 156, 229, 353, 650, 657
Bme1390I	CCNGG	4 cut(s)	195, 429, 684, 727
Bme18I	GGWCC	3 cut(s)	198, 425, 680
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	198, 425, 680
BmiI	GGNNCC	2 cut(s)	199, 681
BmrFI	CCNGG	4 cut(s)	195, 429, 684, 727
BmsI	GCATC	5 cut(s)	214, 329, 383, 385, 407
BoxI	GACNNNNGTC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	727
BsaJI	CCNNGG	4 cut(s)	152, 194, 636, 726
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 563
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	614
BseBI	CCWGG	3 cut(s)	195, 429, 684
BseDI	CCNNGG	4 cut(s)	152, 194, 636, 726
BseGI	GGATG	4 cut(s)	344, 400, 696, 736
BseLI	CCNNNNNNNGG	2 cut(s)	358, 563
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	614
BseXI	GCAGC	4 cut(s)	113, 114, 239, 667
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	601, 726
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	358, 563
BsmAI	GTCTC	3 cut(s)	127, 187, 236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	641
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1407I	TGTACA	2 cut(s)	585, 702
Bsp143I	GATC	5 cut(s)	138, 173, 439, 493, 733
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	7 cut(s)	5, 152, 154, 328, 352, 648, 677
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	199, 681
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	554
BspPI	GGATC	3 cut(s)	181, 488, 728
BspT104I	TTCGAA	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	600
BsrGI	TGTACA	2 cut(s)	585, 702
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	4 cut(s)	152, 194, 636, 726
BssMI	GATC	5 cut(s)	138, 173, 439, 493, 733
Bst2UI	CCWGG	3 cut(s)	195, 429, 684
Bst4CI	ACNGT	3 cut(s)	218, 247, 637
BstAFI	CTTAAG	1 cut(s)	569
BstAUI	TGTACA	2 cut(s)	585, 702
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	328, 653
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	2 cut(s)	152, 636
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	344, 400, 696, 736
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	5 cut(s)	141, 176, 442, 496, 736
BstMAI	GTCTC	3 cut(s)	127, 187, 236
BstMBI	GATC	5 cut(s)	138, 173, 439, 493, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 348
BstNI	CCWGG	3 cut(s)	195, 429, 684
BstNSI	RCATGY	1 cut(s)	765
BstPAI	GACNNNNGTC	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	4 cut(s)	193, 427, 682, 725
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	4 cut(s)	113, 114, 239, 667
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	173, 493
BstYI	RGATCY	2 cut(s)	173, 493
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	2 cut(s)	152, 636
BtgZI	GCGATG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	4 cut(s)	344, 400, 696, 736
BveI	ACCTGC	1 cut(s)	554
Cac8I	GCNNGC	2 cut(s)	328, 653
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	198, 425, 680
Cfr42I	CCGCGG	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	586, 703
CviAII	CATG	2 cut(s)	589, 762
CviJI	RGCY	9 cut(s)	105, 126, 162, 189, 311, 362, 641, 651, 725
CviKI_1	RGCY	9 cut(s)	105, 126, 162, 189, 311, 362, 641, 651, 725
CviQI	GTAC	2 cut(s)	586, 703
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	5 cut(s)	140, 175, 441, 495, 735
DpnII	GATC	5 cut(s)	138, 173, 439, 493, 733
EaeI	YGGCCR	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	3 cut(s)	198, 425, 680
Eco91I	GGTNACC	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	596
EcoRI	GAATTC	2 cut(s)	276, 666
EcoRII	CCWGG	3 cut(s)	193, 427, 682
EcoRV	GATATC	1 cut(s)	742
EcoT22I	ATGCAT	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	2 cut(s)	592, 765
FaiI	YATR	8 cut(s)	28, 389, 489, 511, 590, 707, 752, 763
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	588, 761
FauI	CCCGC	2 cut(s)	335, 670
FbaI	TGATCA	2 cut(s)	138, 439
Fnu4HI	GCNGC	7 cut(s)	103, 127, 155, 228, 352, 649, 656
FokI	GGATG	4 cut(s)	351, 407, 683, 743
Fsp4HI	GCNGC	7 cut(s)	103, 127, 155, 228, 352, 649, 656
FspBI	CTAG	1 cut(s)	671
GluI	GCNGC	7 cut(s)	103, 127, 155, 228, 352, 649, 656
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	2 cut(s)	601, 726
Hin1II	CATG	2 cut(s)	592, 765
HinfI	GANTC	3 cut(s)	88, 203, 499
HpaII	CCGG	2 cut(s)	601, 726
HphI	GGTGA	3 cut(s)	141, 230, 259
Hpy188I	TCNGA	5 cut(s)	93, 282, 289, 338, 498
Hpy188III	TCNNGA	1 cut(s)	737
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	116, 244, 376
HpyCH4III	ACNGT	3 cut(s)	218, 247, 637
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	7 cut(s)	20, 129, 179, 227, 374, 398, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 348
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	592, 765
Ksp22I	TGATCA	2 cut(s)	138, 439
KspI	CCGCGG	1 cut(s)	155
Kzo9I	GATC	5 cut(s)	138, 173, 439, 493, 733
Lsp1109I	GCAGC	4 cut(s)	113, 114, 239, 667
LweI	GCATC	5 cut(s)	214, 329, 383, 385, 407
MabI	ACCWGGT	1 cut(s)	427
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	7, 500, 596
MalI	GATC	5 cut(s)	140, 175, 441, 495, 735
MboI	GATC	5 cut(s)	138, 173, 439, 493, 733
MboII	GAAGA	3 cut(s)	101, 198, 233
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	2 cut(s)	173, 493
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	5 cut(s)	61, 81, 143, 276, 666
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	2 cut(s)	212, 508
MnlI	CCTC	7 cut(s)	45, 46, 54, 79, 508, 586, 638
Mox20I	TGGCCA	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	2 cut(s)	542, 570
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	2 cut(s)	154, 311
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	2 cut(s)	601, 726
MspR9I	CCNGG	4 cut(s)	195, 429, 684, 727
MunI	CAATTG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	3 cut(s)	195, 429, 684
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	317, 348
NciI	CCSGG	1 cut(s)	727
NdeII	GATC	5 cut(s)	138, 173, 439, 493, 733
NlaIII	CATG	2 cut(s)	592, 765
NlaIV	GGNNCC	2 cut(s)	199, 681
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	86
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	7 cut(s)	104, 128, 156, 229, 353, 650, 657
PleI	GAGTC	2 cut(s)	211, 507
PpsI	GAGTC	2 cut(s)	211, 507
PpuMI	RGGWCCY	1 cut(s)	680
PshAI	GACNNNNGTC	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	3 cut(s)	193, 427, 682
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	3 cut(s)	193, 427, 682
PspN4I	GGNNCC	2 cut(s)	199, 681
PspPI	GGNCC	3 cut(s)	198, 425, 680
PspPPI	RGGWCCY	1 cut(s)	680
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	173, 493
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	587, 704
RsaNI	GTAC	2 cut(s)	586, 703
SacII	CCGCGG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	542, 570
SatI	GCNGC	7 cut(s)	103, 127, 155, 228, 352, 649, 656
Sau3AI	GATC	5 cut(s)	138, 173, 439, 493, 733
Sau96I	GGNCC	3 cut(s)	198, 425, 680
SchI	GAGTC	2 cut(s)	212, 508
ScrFI	CCNGG	4 cut(s)	195, 429, 684, 727
SetI	ASST	9 cut(s)	38, 79, 128, 168, 255, 313, 430, 568, 664
SexAI	ACCWGGT	1 cut(s)	427
SfaNI	GCATC	5 cut(s)	214, 329, 383, 385, 407
SfcI	CTRYAG	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	155
SinI	GGWCC	3 cut(s)	198, 425, 680
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	5 cut(s)	61, 81, 143, 276, 666
SsiI	CCGC	7 cut(s)	5, 152, 154, 328, 352, 648, 677
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	4 cut(s)	193, 427, 682, 725
TaaI	ACNGT	3 cut(s)	218, 247, 637
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	71, 86
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	5 cut(s)	61, 81, 143, 276, 666
TatI	WGTACW	2 cut(s)	585, 702
TauI	GCSGC	3 cut(s)	157, 354, 651
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	542, 570
Tru9I	TTAA	2 cut(s)	542, 570
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	102, 126, 227, 655
Tsp45I	GTSAC	1 cut(s)	500
Tth111I	GACNNNGTC	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	3 cut(s)	198, 425, 680
XapI	RAATTY	3 cut(s)	143, 276, 666
XceI	RCATGY	1 cut(s)	765
XspI	CTAG	1 cut(s)	671
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.