Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

44731894 .. 44737082

Gene Structure 5189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCCATCTCTGCCATCTGCAAAGAACAACTCAAAAGGACATCTTCTTCCCAACAGACAGTTCCCTCCAAATTGATGATGGTGAAAAGCAATTAGAGGTTCTGATCGGGCAGCTTAGAAAAATGGTTCAAGTTATAACAACGTACCTCAGAGCCAAGTCTTTCCATGTAGCCAGCACTCGATATATAGTGGTTGAATCCGGTGTGGCTCTTGTTTTGATTGGACATGACTCTAGACTTTGCCAACTATTTCATATTTTGATCTACTATTTTATGGAAATGCAATCAATCTTTATTATTACTATAAGCAGTAATTTGGTGCATACAAAATCATTCTCTGAGCAAACCGAATTCAAAGGAGAGGCATTAAGATTTGTTTCTGGTGTCACAACCACATTCACTCTCAAAGGATTCTCATATAAGTTGCTTCCACCACATTCCAGACAGGAGGGTTATCGACAAGACTGGAAGCTTTCCTTTGAACAGGACATCATGAGCAGAGGCGGCTGGGTGCTAGTTGCAAGTCCTGGTAAAAGTAACATCTTGTACATTCACAAGGACAAAGAAGCTGGGGATAATCCAGATGTCAAAGATATCCTCAAAGCATGTTGTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

206

Amino Acids

23.47

Weight (kDa)

8.3

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AciI	CCGC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	146, 548
AgsI	TTSAA	4 cut(s)	131, 197, 355, 482
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	3 cut(s)	115, 472, 569
AluI	AGCT	3 cut(s)	115, 472, 569
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	15, 24, 74
BciT130I	CCWGG	1 cut(s)	528
BfaI	CTAG	2 cut(s)	234, 515
BisI	GCNGC	2 cut(s)	113, 505
BlsI	GCNGC	2 cut(s)	114, 506
Bme1390I	CCNGG	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	163, 330
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	2 cut(s)	507, 569
BsiSI	CCGG	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	105, 261
BspACI	CCGC	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	162, 331
BspHI	TCATGA	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	470
BssMI	GATC	2 cut(s)	105, 261
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	116, 149, 339
BstKTI	GATC	2 cut(s)	108, 264
BstMBI	GATC	2 cut(s)	105, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 504
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	145, 547
CviAII	CATG	4 cut(s)	167, 227, 493, 606
CviJI	RGCY	8 cut(s)	6, 115, 155, 173, 209, 472, 507, 569
CviKI_1	RGCY	8 cut(s)	6, 115, 155, 173, 209, 472, 507, 569
CviQI	GTAC	2 cut(s)	145, 547
DdeI	CTNAG	3 cut(s)	116, 149, 339
DpnI	GATC	2 cut(s)	107, 263
DpnII	GATC	2 cut(s)	105, 261
Eco32I	GATATC	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	595
FaeI	CATG	4 cut(s)	170, 230, 496, 609
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 461, 493
FatI	CATG	4 cut(s)	166, 226, 492, 605
Fnu4HI	GCNGC	2 cut(s)	113, 505
Fsp4HI	GCNGC	2 cut(s)	113, 505
FspBI	CTAG	2 cut(s)	234, 515
GluI	GCNGC	2 cut(s)	113, 505
GsaI	CCCAGC	2 cut(s)	511, 573
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	4 cut(s)	170, 230, 496, 609
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	197, 230, 411
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	3 cut(s)	105, 152, 340
Hpy188III	TCNNGA	4 cut(s)	234, 441, 493, 581
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	22, 283, 322, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 504
HpyF3I	CTNAG	3 cut(s)	116, 149, 339
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	170, 230, 496, 609
Kzo9I	GATC	2 cut(s)	105, 261
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	234, 515
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	385, 536
MalI	GATC	2 cut(s)	107, 263
MboI	GATC	2 cut(s)	105, 261
MboII	GAAGA	2 cut(s)	37, 40
MluCI	AATT	4 cut(s)	72, 92, 313, 350
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	77, 91, 158, 355, 442, 494, 608
MseI	TTAA	2 cut(s)	368, 619
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	12, 504
NdeII	GATC	2 cut(s)	105, 261
NlaIII	CATG	4 cut(s)	170, 230, 496, 609
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	609
PagI	TCATGA	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	197, 411
PkrI	GCNGC	2 cut(s)	114, 506
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	2 cut(s)	507, 569
PspGI	CCWGG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	146, 548
RsaNI	GTAC	2 cut(s)	145, 547
SaqAI	TTAA	2 cut(s)	368, 619
SatI	GCNGC	2 cut(s)	113, 505
Sau3AI	GATC	2 cut(s)	105, 261
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	6 cut(s)	102, 117, 146, 150, 474, 571
Sse9I	AATT	4 cut(s)	72, 92, 313, 350
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	234, 515
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	181, 457
TasI	AATT	4 cut(s)	72, 92, 313, 350
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	197, 411
Tru1I	TTAA	2 cut(s)	368, 619
Tru9I	TTAA	2 cut(s)	368, 619
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	242
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XspI	CTAG	2 cut(s)	234, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.