Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

48185171 .. 48186325

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTTGGCAGGATATATATATATAGTGGATGAATCTGGTGTGGCTCTTGTTTTGATTGGACATGGTAGCATTGATCAGGGTGCTAGTTGCAAGTCCTGGACTCCTGGTAAAAGTAACATCTTGTACATTCACAAGGACAAAGAAGCTGGGGATGATCCAGATATCAAAGGTATCCTCAAAGCATGTTGTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

65

Amino Acids

6.84

Weight (kDa)

5.42

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	95, 103
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	97, 105
BciVI	GTATCC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	97, 105
BmrFI	CCNGG	2 cut(s)	97, 105
BseBI	CCWGG	2 cut(s)	97, 105
BseGI	GGATG	2 cut(s)	34, 157
BseYI	CCCAGC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	73, 154
BspPI	GGATC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	123
BssMI	GATC	2 cut(s)	73, 154
Bst2UI	CCWGG	2 cut(s)	97, 105
BstAUI	TGTACA	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	34, 157
BstKTI	GATC	2 cut(s)	76, 157
BstMBI	GATC	2 cut(s)	73, 154
BstNI	CCWGG	2 cut(s)	97, 105
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	95, 103
BsuI	GTATCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	34, 157
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	62, 183
CviJI	RGCY	2 cut(s)	44, 146
CviKI_1	RGCY	2 cut(s)	44, 146
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	2 cut(s)	75, 156
DpnII	GATC	2 cut(s)	73, 154
Eco32I	GATATC	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	95, 103
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	2 cut(s)	65, 186
FaiI	YATR	7 cut(s)	15, 17, 19, 21, 23, 63, 184
FatI	CATG	2 cut(s)	61, 182
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	2 cut(s)	41, 164
FspBI	CTAG	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	65, 186
HinfI	GANTC	2 cut(s)	32, 100
Hpy188III	TCNNGA	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	65, 186
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 154
LpnPI	CCDG	8 cut(s)	21, 62, 82, 90, 109, 117, 132, 171
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	75, 156
MboI	GATC	2 cut(s)	73, 154
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	97, 105
MvaI	CCWGG	2 cut(s)	97, 105
NdeII	GATC	2 cut(s)	73, 154
NlaIII	CATG	2 cut(s)	65, 186
NspI	RCATGY	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	95
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	95, 103
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	95, 103
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	73, 154
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	97, 105
SetI	ASST	2 cut(s)	148, 172
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	95, 103
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	45
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.