Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Forward (+)

14309144 .. 14311946

Gene Structure 2803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGGTTACTCTCTCCGCTGCAACTCTCTTCCCCAATAGACTCGGAGTTCACAGGACCTCCACCAATCAGACTTCGACGCGTGTAATCCCCAGCGCATCTCCGAACGCAAACGTTAGCTTCTGCAGCAGTAGAGTCAATTTCTCACGAAGGCGAAGCGACGTCGTAGCGTTCTCTGCGGTGTCGGGCTCACCAGGCAAGCTTTGCTCTTTGAATAATCTGTTTGGAATCGAGTCTTCTTCGAATGCTGGAGATACAGCAAGTTTGTTGGACTCAGTGAAGGTGTTTGATCTGAACGGAAATGGGATTCCGATTTCGGATTTGTGGAAAGATAGGACAGCTGTTATTGCATTTGCGCGCCATTTCGGATGTGTCTTTTGCCGCAAACGGGCTGACTATCTTGCCTCAAAGAAGGATATAATGGATGAATCTGGTGTGGCTCTTGTTTTGATTGGACCCGGTAGTATTGATCAGGCAAAATCGTTCTCTGAGAAAACCAAATTCAAAGGAGAAGTTTATGCAGATCCCAGTCACTCGTCGTATGAAGCATTAAGATTTGTTTCTGGTGTCACAACCACATTCACTCCCAAAGCAGGTCTCAAGATAATACAGTTGTACATGGAGGGTTATCGACAAGACTGGAAGCTTTCCTTTGAACAGGACACCGTGAGCAGAGGCGGCTGGCAGCAGGGTGGAATTATAGTTGCAGGTCCTGGTAAAAGTAACATATTGTACATTCACAAGGATAAAGAAGCCGGGGATGATCCAGATATCAAAGACATTCTGAAAGCATGTTGTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

268

Amino Acids

28.92

Weight (kDa)

8.98

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	94 - 187	5.3e-07	AhpC/TSA family
AhpC-TSA_2	PF13911	134 - 251	1.2e-20	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
Acc36I	ACCTGC	2 cut(s)	584, 698
AccII	CGCG	2 cut(s)	82, 358
AciI	CCGC	5 cut(s)	5, 18, 179, 382, 678
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	2 cut(s)	518, 758
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	617, 734
AfiI	CCNNNNNNNGG	2 cut(s)	388, 593
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	214, 505, 656
AjnI	CCWGG	2 cut(s)	193, 712
AluBI	AGCT	4 cut(s)	120, 202, 341, 646
AluI	AGCT	4 cut(s)	120, 202, 341, 646
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	518, 758
AlwNI	CAGNNNCTG	1 cut(s)	713
ApeKI	GCWGC	3 cut(s)	20, 126, 685
ApoI	RAATTY	1 cut(s)	500
AspLEI	GCGC	3 cut(s)	98, 358, 360
AspS9I	GGNCC	3 cut(s)	57, 455, 710
AsuC2I	CCSGG	2 cut(s)	459, 757
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	57, 455, 710
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	7, 138, 697
BciT130I	CCWGG	2 cut(s)	195, 714
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	459, 757
BcoDI	GTCTC	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	124
BfuAI	ACCTGC	2 cut(s)	584, 698
BisI	GCNGC	5 cut(s)	21, 127, 382, 679, 686
BlsI	GCNGC	5 cut(s)	22, 128, 383, 680, 687
Bme1390I	CCNGG	4 cut(s)	195, 459, 714, 757
Bme18I	GGWCC	3 cut(s)	57, 455, 710
BmgT120I	GGNCC	3 cut(s)	57, 455, 710
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	4 cut(s)	195, 459, 714, 757
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	2 cut(s)	459, 757
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	756
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 593
Bse1I	ACTGG	2 cut(s)	528, 644
BseBI	CCWGG	2 cut(s)	195, 714
BseDI	CCNNGG	1 cut(s)	756
BseGI	GGATG	3 cut(s)	374, 430, 766
BseLI	CCNNNNNNNGG	2 cut(s)	388, 593
BseMII	CTCAG	2 cut(s)	288, 480
BseNI	ACTGG	2 cut(s)	528, 644
BsePI	GCGCGC	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	7, 138, 697
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	2 cut(s)	82, 358
BsiSI	CCGG	2 cut(s)	459, 756
BslI	CCNNNNNNNGG	2 cut(s)	388, 593
BsmAI	GTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	2 cut(s)	615, 732
Bsp143I	GATC	4 cut(s)	289, 469, 523, 763
BspACI	CCGC	5 cut(s)	5, 18, 179, 382, 678
BspCNI	CTCAG	2 cut(s)	287, 481
BspFNI	CGCG	2 cut(s)	82, 358
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	128
BspMI	ACCTGC	2 cut(s)	584, 698
BspPI	GGATC	2 cut(s)	518, 758
BspT104I	TTCGAA	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	602
BsrGI	TGTACA	2 cut(s)	615, 732
BsrI	ACTGG	2 cut(s)	528, 644
BssECI	CCNNGG	1 cut(s)	756
BssHII	GCGCGC	1 cut(s)	356
BssMI	GATC	4 cut(s)	289, 469, 523, 763
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	195, 714
Bst4CI	ACNGT	2 cut(s)	612, 667
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	204
BstAUI	TGTACA	2 cut(s)	615, 732
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	200, 358, 683
BstDEI	CTNAG	2 cut(s)	274, 489
BstF5I	GGATG	3 cut(s)	374, 430, 766
BstFNI	CGCG	2 cut(s)	82, 358
BstHHI	GCGC	3 cut(s)	98, 358, 360
BstKTI	GATC	4 cut(s)	292, 472, 526, 766
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	4 cut(s)	289, 469, 523, 763
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 176, 195, 204, 347, 678
BstNI	CCWGG	2 cut(s)	195, 714
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	4 cut(s)	193, 457, 712, 755
BstSFI	CTRYAG	1 cut(s)	124
BstUI	CGCG	2 cut(s)	82, 358
BstV1I	GCAGC	3 cut(s)	7, 138, 697
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BtsCI	GGATG	3 cut(s)	374, 430, 766
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	2 cut(s)	584, 698
Cac8I	GCNNGC	3 cut(s)	200, 358, 683
CaiI	CAGNNNCTG	1 cut(s)	713
CfoI	GCGC	3 cut(s)	98, 358, 360
Cfr13I	GGNCC	3 cut(s)	57, 455, 710
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	616, 733
CviAII	CATG	2 cut(s)	619, 792
CviJI	RGCY	9 cut(s)	120, 189, 202, 341, 392, 440, 646, 681, 755
CviKI_1	RGCY	9 cut(s)	120, 189, 202, 341, 392, 440, 646, 681, 755
CviQI	GTAC	2 cut(s)	616, 733
DdeI	CTNAG	2 cut(s)	274, 489
DpnI	GATC	4 cut(s)	291, 471, 525, 765
DpnII	GATC	4 cut(s)	289, 469, 523, 763
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	3 cut(s)	57, 455, 710
EcoO109I	RGGNCCY	2 cut(s)	57, 710
EcoRII	CCWGG	2 cut(s)	193, 712
EcoRV	GATATC	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	2 cut(s)	622, 795
FaiI	YATR	7 cut(s)	419, 519, 543, 620, 701, 728, 793
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FatI	CATG	2 cut(s)	618, 791
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	21, 127, 382, 679, 686
FokI	GGATG	3 cut(s)	381, 437, 773
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	5 cut(s)	21, 127, 382, 679, 686
GlaI	GCGC	3 cut(s)	97, 357, 359
GluI	GCNGC	5 cut(s)	21, 127, 382, 679, 686
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	270
HapII	CCGG	2 cut(s)	459, 756
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	3 cut(s)	98, 358, 360
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	622, 795
Hin6I	GCGC	3 cut(s)	96, 356, 358
HinP1I	GCGC	3 cut(s)	96, 356, 358
HindIII	AAGCTT	2 cut(s)	200, 644
HinfI	GANTC	7 cut(s)	42, 135, 228, 233, 272, 307, 428
HpaII	CCGG	2 cut(s)	459, 756
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	9 cut(s)	47, 72, 105, 294, 312, 319, 368, 490, 786
Hpy188III	TCNNGA	3 cut(s)	147, 601, 767
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	4 cut(s)	82, 164, 167, 541
HpyAV	CCTTC	3 cut(s)	144, 274, 406
HpyCH4III	ACNGT	2 cut(s)	612, 667
HpyCH4IV	ACGT	2 cut(s)	114, 162
HpyCH4V	TGCA	5 cut(s)	23, 126, 350, 521, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 176, 195, 204, 347, 678
HpyF3I	CTNAG	2 cut(s)	274, 489
HpySE526I	ACGT	2 cut(s)	114, 162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	622, 795
HspAI	GCGC	3 cut(s)	96, 356, 358
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	289, 469, 523, 763
Lsp1109I	GCAGC	3 cut(s)	7, 138, 697
LweI	GCATC	1 cut(s)	107
MaeII	ACGT	2 cut(s)	114, 162
MaeIII	GTNAC	4 cut(s)	7, 530, 568, 722
MalI	GATC	4 cut(s)	291, 471, 525, 765
MboI	GATC	4 cut(s)	289, 469, 523, 763
MboII	GAAGA	3 cut(s)	22, 228, 231
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	139, 500, 696
MluI	ACGCGT	1 cut(s)	80
MlyI	GAGTC	4 cut(s)	36, 144, 242, 266
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	70, 415, 616, 668
MseI	TTAA	2 cut(s)	551, 805
MspA1I	CMGCKG	2 cut(s)	20, 341
MspI	CCGG	2 cut(s)	459, 756
MspR9I	CCNGG	4 cut(s)	195, 459, 714, 757
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	195, 714
MvnI	CGCG	2 cut(s)	82, 358
MwoI	GCNNNNNNNGC	6 cut(s)	126, 176, 195, 204, 347, 678
NciI	CCSGG	2 cut(s)	459, 757
NdeII	GATC	4 cut(s)	289, 469, 523, 763
NlaIII	CATG	2 cut(s)	622, 795
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	2 cut(s)	530, 568
NspI	RCATGY	1 cut(s)	795
NspV	TTCGAA	1 cut(s)	242
PauI	GCGCGC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	228, 307, 428
PkrI	GCNGC	5 cut(s)	22, 128, 383, 680, 687
PleI	GAGTC	4 cut(s)	36, 143, 241, 266
PpsI	GAGTC	4 cut(s)	36, 143, 241, 266
PpuMI	RGGWCCY	2 cut(s)	57, 710
Psp1406I	AACGTT	1 cut(s)	114
Psp5II	RGGWCCY	2 cut(s)	57, 710
Psp6I	CCWGG	2 cut(s)	193, 712
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	2 cut(s)	193, 712
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	3 cut(s)	57, 455, 710
PspPPI	RGGWCCY	2 cut(s)	57, 710
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	523
PteI	GCGCGC	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	617, 734
RsaNI	GTAC	2 cut(s)	616, 733
SaqAI	TTAA	2 cut(s)	551, 805
SatI	GCNGC	5 cut(s)	21, 127, 382, 679, 686
Sau3AI	GATC	4 cut(s)	289, 469, 523, 763
Sau96I	GGNCC	3 cut(s)	57, 455, 710
SchI	GAGTC	4 cut(s)	36, 144, 242, 266
ScrFI	CCNGG	4 cut(s)	195, 459, 714, 757
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	3 cut(s)	57, 455, 710
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	139, 500, 696
SsiI	CCGC	5 cut(s)	5, 18, 179, 382, 678
StyD4I	CCNGG	4 cut(s)	193, 457, 712, 755
TaaI	ACNGT	2 cut(s)	612, 667
TaiI	ACGT	2 cut(s)	117, 165
TaqI	TCGA	4 cut(s)	77, 231, 242, 631
TasI	AATT	3 cut(s)	139, 500, 696
TatI	WGTACW	2 cut(s)	615, 732
TauI	GCSGC	2 cut(s)	384, 681
TfiI	GAWTC	3 cut(s)	228, 307, 428
Tru1I	TTAA	2 cut(s)	551, 805
Tru9I	TTAA	2 cut(s)	551, 805
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	2 cut(s)	530, 568
TseI	GCWGC	3 cut(s)	20, 126, 685
Tsp45I	GTSAC	2 cut(s)	530, 568
TspDTI	ATGAA	2 cut(s)	441, 558
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	3 cut(s)	57, 455, 710
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	795
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.