Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

45735670 .. 45740682

Gene Structure 5013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGACGTGCAGACCGAAGTTTGGTTGGTGTCCGGCCTTGCTTTCTGAGAATGAGCTTAATTTACCTCCACTTTCCTTGTTGGGAATATTGTGGCATGGATATATAGTGGATGAATCCGGTGTGGCTCTTGTTTTGATTGGACACGGTAGCATTGATCAGGACAAAGAAGCTGGGGATGATCCAGATATCAAAGATATCCTCAAAGCATGTTGTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

73

Amino Acids

7.86

Weight (kDa)

4.46

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	20
AjiI	CACGTC	1 cut(s)	6
AluBI	AGCT	2 cut(s)	55, 170
AluI	AGCT	2 cut(s)	55, 170
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	115, 181
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	32, 117
BslI	CCNNNNNNNGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	154, 178
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	173
BssMI	GATC	2 cut(s)	154, 178
Bst4CI	ACNGT	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	115, 181
BstKTI	GATC	2 cut(s)	157, 181
BstMBI	GATC	2 cut(s)	154, 178
BstNSI	RCATGY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	115, 181
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	2 cut(s)	95, 207
CviJI	RGCY	4 cut(s)	35, 55, 125, 170
CviKI_1	RGCY	4 cut(s)	35, 55, 125, 170
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	156, 180
DpnII	GATC	2 cut(s)	154, 178
Eco32I	GATATC	2 cut(s)	187, 196
EcoRV	GATATC	2 cut(s)	187, 196
FaeI	CATG	2 cut(s)	98, 210
FaiI	YATR	4 cut(s)	96, 102, 104, 208
FatI	CATG	2 cut(s)	94, 206
FbaI	TGATCA	1 cut(s)	154
FokI	GGATG	2 cut(s)	122, 188
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	32, 117
Hin1II	CATG	2 cut(s)	98, 210
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	2 cut(s)	32, 117
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	158, 182
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	98, 210
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	154, 178
LpnPI	CCDG	5 cut(s)	45, 130, 143, 156, 195
MaeII	ACGT	1 cut(s)	5
MalI	GATC	2 cut(s)	156, 180
MboI	GATC	2 cut(s)	154, 178
MluCI	AATT	1 cut(s)	58
MnlI	CCTC	2 cut(s)	75, 209
MseI	TTAA	2 cut(s)	57, 220
MspI	CCGG	2 cut(s)	32, 117
NdeII	GATC	2 cut(s)	154, 178
NlaIII	CATG	2 cut(s)	98, 210
NspI	RCATGY	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	57, 220
Sau3AI	GATC	2 cut(s)	154, 178
SetI	ASST	4 cut(s)	8, 57, 67, 172
Sse9I	AATT	1 cut(s)	58
SspI	AATATT	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	57, 220
Tru9I	TTAA	2 cut(s)	57, 220
TspDTI	ATGAA	1 cut(s)	126
XceI	RCATGY	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.