Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Forward (+)

9358690 .. 9361869

Gene Structure 3180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGTTGCTCTCTCTTCTGCTACTCTCTTCCCCAGTAGACTCGGAGTTCAAAGGACTTCCACCGATCAGAATTCGACACGTGTGACCTCCAGCCCATCTCCGAACGCAATCGTGTTCAATTTGAATAGGTGCAGCAGAGGAGTCAGTTTCTCACGGAGGCGAAGCGGCGTCGTAGCGTCTGCGGCGTCGGGCTCACCAGGAATTGAGTCTTCCTCTTCGAATGCTGAAGATACAGCAAGTTTGTTAGACACGGTGAAAGTTTTTGATCTGAATGGTAATGGAATTCCTATTTCGGATTTGTGGAAGGATAGGACAGCTGTGATCGCATTTGCGCGCCATTTCGGATGTGTCTTTTGCCGCAAACGGGCTGACTATCTTGCCTCAAAGAAGGATATAATGGATAAATCTGGCGTGGCTCTTGTTTTGATTGGACCTGGTAGCATTAATCAGGCAAAATCATTTTCTGAGCAAACCAGATTCAAAGGAGAAGTTTATGCAGATCCCAGTCACTCATCGTATGAAGCATTGAGATTTGTTTCTGGTGTCACAACCACATTCACTCCCAAAGCAGGTCTCAAGATAATACAGTTGTACATGGAGGGTTATAGACAAGACTGGAAACTTTCCTTTGAACAGGACACTGTGAGCAGAGGCGGCTGGCAGCAGGGTGGAATTATAGTTGCAGGTCCTGGTAAAAGTAACATTTTGTACATTCACAAGGACAAAGAAGCCGGGGATGATCCAGATATCAATGATATTCTCAATGCATGTTGTGGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

262

Amino Acids

28.06

Weight (kDa)

8.95

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	87 - 180	2e-06	AhpC/TSA family
AhpC-TSA_2	PF13911	127 - 225	1.3e-14	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	563, 677
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	337
AciI	CCGC	5 cut(s)	5, 168, 185, 361, 657
AclWI	GGATC	2 cut(s)	497, 737
AcsI	RAATTY	2 cut(s)	73, 285
AcuI	CTGAAG	1 cut(s)	249
AcvI	CACGTG	1 cut(s)	83
AcyI	GRCGYC	2 cut(s)	171, 188
AfaI	GTAC	2 cut(s)	596, 713
AfiI	CCNNNNNNNGG	2 cut(s)	367, 572
AflIII	ACRYGT	2 cut(s)	80, 82
AgsI	TTSAA	5 cut(s)	53, 121, 127, 484, 635
AjnI	CCWGG	3 cut(s)	199, 436, 691
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	2 cut(s)	497, 737
AlwNI	CAGNNNCTG	1 cut(s)	692
ApeKI	GCWGC	2 cut(s)	135, 664
ApoI	RAATTY	2 cut(s)	73, 285
AseI	ATTAAT	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	337, 339
AspS9I	GGNCC	2 cut(s)	434, 689
AsuC2I	CCSGG	1 cut(s)	736
AsuHPI	GGTGA	2 cut(s)	189, 268
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	434, 689
BanII	GRGCYC	1 cut(s)	197
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	147, 676
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	3 cut(s)	201, 438, 693
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	1 cut(s)	581
BfuAI	ACCTGC	2 cut(s)	563, 677
BisI	GCNGC	6 cut(s)	136, 169, 186, 361, 658, 665
BlsI	GCNGC	6 cut(s)	137, 170, 187, 362, 659, 666
Bme1390I	CCNGG	4 cut(s)	201, 438, 693, 736
Bme18I	GGWCC	2 cut(s)	434, 689
BmgT120I	GGNCC	2 cut(s)	434, 689
BmrFI	CCNGG	4 cut(s)	201, 438, 693, 736
BmrI	ACTGGG	2 cut(s)	30, 501
BmuI	ACTGGG	2 cut(s)	30, 501
BpiI	GAAGAC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	76
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	83
BsaHI	GRCGYC	2 cut(s)	171, 188
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 572
Bse1I	ACTGG	3 cut(s)	36, 507, 623
BseBI	CCWGG	3 cut(s)	201, 438, 693
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	2 cut(s)	353, 745
BseLI	CCNNNNNNNGG	2 cut(s)	367, 572
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	36, 507, 623
BsePI	GCGCGC	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	147, 676
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	367, 572
BsmAI	GTCTC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	581
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp1407I	TGTACA	2 cut(s)	594, 711
Bsp143I	GATC	5 cut(s)	67, 268, 324, 502, 742
BspACI	CCGC	5 cut(s)	5, 168, 185, 361, 657
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	563, 677
BspPI	GGATC	2 cut(s)	497, 737
BspT104I	TTCGAA	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	581
BsrGI	TGTACA	2 cut(s)	594, 711
BsrI	ACTGG	3 cut(s)	36, 507, 623
BssECI	CCNNGG	1 cut(s)	735
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	5 cut(s)	67, 268, 324, 502, 742
BssNI	GRCGYC	2 cut(s)	171, 188
Bst2UI	CCWGG	3 cut(s)	201, 438, 693
Bst4CI	ACNGT	3 cut(s)	256, 591, 646
Bst6I	CTCTTC	3 cut(s)	22, 35, 223
BstACI	GRCGYC	2 cut(s)	171, 188
BstAUI	TGTACA	2 cut(s)	594, 711
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	337, 662
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	353, 745
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	337, 339
BstKTI	GATC	5 cut(s)	70, 271, 327, 505, 745
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	67, 268, 324, 502, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 326, 657
BstNI	CCWGG	3 cut(s)	201, 438, 693
BstNSI	RCATGY	1 cut(s)	774
BstSCI	CCNGG	4 cut(s)	199, 436, 691, 734
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	147, 676
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	353, 745
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	2 cut(s)	563, 677
Cac8I	GCNNGC	2 cut(s)	337, 662
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	2 cut(s)	337, 339
Cfr13I	GGNCC	2 cut(s)	434, 689
CseI	GACGC	3 cut(s)	160, 168, 177
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	595, 712
CviAII	CATG	2 cut(s)	598, 771
CviJI	RGCY	7 cut(s)	96, 195, 320, 371, 419, 660, 734
CviKI_1	RGCY	7 cut(s)	96, 195, 320, 371, 419, 660, 734
CviQI	GTAC	2 cut(s)	595, 712
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	5 cut(s)	69, 270, 326, 504, 744
DpnII	GATC	5 cut(s)	67, 268, 324, 502, 742
Eam1104I	CTCTTC	3 cut(s)	22, 35, 223
EarI	CTCTTC	3 cut(s)	22, 35, 223
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	434, 689
Eco57I	CTGAAG	1 cut(s)	249
Eco72I	CACGTG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRI	GAATTC	2 cut(s)	73, 285
EcoRII	CCWGG	3 cut(s)	199, 436, 691
EcoRV	GATATC	1 cut(s)	751
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	2 cut(s)	601, 774
FaiI	YATR	7 cut(s)	398, 498, 522, 599, 609, 680, 772
FatI	CATG	2 cut(s)	597, 770
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	6 cut(s)	136, 169, 186, 361, 658, 665
FokI	GGATG	2 cut(s)	360, 752
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	6 cut(s)	136, 169, 186, 361, 658, 665
GlaI	GCGC	2 cut(s)	336, 338
GluI	GCNGC	6 cut(s)	136, 169, 186, 361, 658, 665
GsuI	CTGGAG	1 cut(s)	76
HapII	CCGG	1 cut(s)	735
HgaI	GACGC	3 cut(s)	160, 168, 177
HhaI	GCGC	2 cut(s)	337, 339
Hin1I	GRCGYC	2 cut(s)	171, 188
Hin1II	CATG	2 cut(s)	601, 774
Hin6I	GCGC	2 cut(s)	335, 337
HinP1I	GCGC	2 cut(s)	335, 337
HinfI	GANTC	4 cut(s)	42, 144, 209, 480
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	2 cut(s)	189, 268
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	7 cut(s)	47, 72, 105, 273, 298, 347, 469
Hpy188III	TCNNGA	2 cut(s)	580, 746
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	2 cut(s)	176, 193
HpyAV	CCTTC	2 cut(s)	301, 385
HpyCH4III	ACNGT	3 cut(s)	256, 591, 646
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	135, 500, 686, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 326, 657
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	2 cut(s)	171, 188
Hsp92II	CATG	2 cut(s)	601, 774
HspAI	GCGC	2 cut(s)	335, 337
Kzo9I	GATC	5 cut(s)	67, 268, 324, 502, 742
Lsp1109I	GCAGC	2 cut(s)	147, 676
MabI	ACCWGGT	1 cut(s)	436
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	4 cut(s)	85, 509, 547, 701
MalI	GATC	5 cut(s)	69, 270, 326, 504, 744
MboI	GATC	5 cut(s)	67, 268, 324, 502, 742
MboII	GAAGA	5 cut(s)	9, 22, 204, 210, 242
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	5 cut(s)	73, 121, 204, 285, 675
MlyI	GAGTC	3 cut(s)	36, 153, 218
MnlI	CCTC	7 cut(s)	100, 134, 153, 226, 394, 595, 647
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	4 cut(s)	201, 438, 693, 736
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	201, 438, 693
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	185, 326, 657
NciI	CCSGG	1 cut(s)	736
NdeII	GATC	5 cut(s)	67, 268, 324, 502, 742
NlaIII	CATG	2 cut(s)	601, 774
NmuCI	GTSAC	3 cut(s)	85, 509, 547
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	774
NspV	TTCGAA	1 cut(s)	221
PauI	GCGCGC	1 cut(s)	335
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	480
PkrI	GCNGC	6 cut(s)	137, 170, 187, 362, 659, 666
PleI	GAGTC	3 cut(s)	36, 152, 217
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	3 cut(s)	36, 152, 217
Ppu21I	YACGTR	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	689
PshBI	ATTAAT	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	689
Psp6I	CCWGG	3 cut(s)	199, 436, 691
PspCI	CACGTG	1 cut(s)	83
PspGI	CCWGG	3 cut(s)	199, 436, 691
PspPI	GGNCC	2 cut(s)	434, 689
PspPPI	RGGWCCY	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	502
PteI	GCGCGC	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	596, 713
RsaNI	GTAC	2 cut(s)	595, 712
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	6 cut(s)	136, 169, 186, 361, 658, 665
Sau3AI	GATC	5 cut(s)	67, 268, 324, 502, 742
Sau96I	GGNCC	2 cut(s)	434, 689
SchI	GAGTC	3 cut(s)	36, 153, 218
ScrFI	CCNGG	4 cut(s)	201, 438, 693, 736
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	7 cut(s)	85, 92, 134, 322, 439, 577, 691
SexAI	ACCWGGT	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	2 cut(s)	434, 689
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	5 cut(s)	73, 121, 204, 285, 675
SsiI	CCGC	5 cut(s)	5, 168, 185, 361, 657
StyD4I	CCNGG	4 cut(s)	199, 436, 691, 734
TaaI	ACNGT	3 cut(s)	256, 591, 646
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	77, 221
TasI	AATT	5 cut(s)	73, 121, 204, 285, 675
TatI	WGTACW	2 cut(s)	594, 711
TauI	GCSGC	4 cut(s)	171, 188, 363, 660
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	3 cut(s)	85, 509, 547
TseI	GCWGC	2 cut(s)	135, 664
Tsp45I	GTSAC	3 cut(s)	85, 509, 547
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	2 cut(s)	434, 689
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	2 cut(s)	73, 285
XceI	RCATGY	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.