Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Forward (+)

14253185 .. 14255857

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGTTACTCTCTCCGCTGCAACTCTCTTCCCCAATAGACTCGGAGTTCACAGGACCTCCACCAATCAGACTTCGACGCGTGTAATCCCCAGCGCATCTCCGAACGCAAACGTCAGCTTCTGCAGCAGTAGAGTCGATTTCTCACGAAGGCGAAGCGACGTCGTAGCGTTCTCTGCGGTGTCGGGCTCACCAGGAATTGAGTCTTCTTCGAATGCTGGAGATACAGCAAGTTTGTTGGACTCAGTGAAGGTGTTTGATCTGAACGGAAATGGGATTCCGATTTCGGATTTGTGGAAAGATAGGACAGCTGTTATTGCATTTGCGCGCCATTTCGGATGCGTCTTTTGCCGCAAACGGGCTGACTATCTTGCCTCAAAGAAGGATATAATGGATGAATCTGGTGTGGCTCTTGTTTTGATTGGACCCGGTAGTATCGATCAGGCAAAATCGTTCTCTGAGAAAACCAAATTCAAAGGAGAAGTTTATGCAGATCCCAGTCACTCGTCGTATGAAGCATTAAGATTTGTTTCTGGTGTCACAACCACATTCACTCCCAAAGCAGGTCTCAAGATAATACAGTTGTACATGGAGGGTTATCGACAAGACTGGAAGCTTTCCTTTGAACAGGACACCGTGAGCAGAGGCGGCTGGCAGCAAGGTGGAATTATAGTTGCAGGTCCTGGTAAAAGTAATATATTGTACATTCACAAGGATAAAGAAGCCGGGGATGATCCAGAAATCAAAGATATTCTGAAAGCATGTTGTGGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

258

Amino Acids

27.84

Weight (kDa)

8.75

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	84 - 177	4.9e-07	AhpC/TSA family
AhpC-TSA_2	PF13911	124 - 241	1.1e-20	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
Acc36I	ACCTGC	2 cut(s)	554, 668
AccII	CGCG	2 cut(s)	82, 328
AciI	CCGC	5 cut(s)	5, 18, 179, 352, 648
AclWI	GGATC	2 cut(s)	488, 728
AcsI	RAATTY	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	587, 704
AfiI	CCNNNNNNNGG	2 cut(s)	358, 563
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	475, 626
AjnI	CCWGG	2 cut(s)	193, 682
AluBI	AGCT	3 cut(s)	120, 311, 616
AluI	AGCT	3 cut(s)	120, 311, 616
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	488, 728
AlwNI	CAGNNNCTG	2 cut(s)	123, 683
ApeKI	GCWGC	3 cut(s)	20, 126, 655
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	3 cut(s)	98, 328, 330
AspS9I	GGNCC	3 cut(s)	57, 425, 680
AsuC2I	CCSGG	2 cut(s)	429, 727
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	57, 425, 680
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	7, 138, 667
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	2 cut(s)	195, 684
BcnI	CCSGG	2 cut(s)	429, 727
BcoDI	GTCTC	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	124
BfuAI	ACCTGC	2 cut(s)	554, 668
BisI	GCNGC	5 cut(s)	21, 127, 352, 649, 656
BlsI	GCNGC	5 cut(s)	22, 128, 353, 650, 657
Bme1390I	CCNGG	4 cut(s)	195, 429, 684, 727
Bme18I	GGWCC	3 cut(s)	57, 425, 680
BmgT120I	GGNCC	3 cut(s)	57, 425, 680
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	4 cut(s)	195, 429, 684, 727
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	107, 329
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	429, 727
Bsa29I	ATCGAT	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	726
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 563
Bse1I	ACTGG	2 cut(s)	498, 614
BseBI	CCWGG	2 cut(s)	195, 684
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	3 cut(s)	344, 400, 736
BseLI	CCNNNNNNNGG	2 cut(s)	358, 563
BseMII	CTCAG	2 cut(s)	258, 450
BseNI	ACTGG	2 cut(s)	498, 614
BsePI	GCGCGC	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	7, 138, 667
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	2 cut(s)	82, 328
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	429, 726
BslI	CCNNNNNNNGG	2 cut(s)	358, 563
BsmAI	GTCTC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	2 cut(s)	585, 702
Bsp143I	GATC	4 cut(s)	259, 439, 493, 733
BspACI	CCGC	5 cut(s)	5, 18, 179, 352, 648
BspCNI	CTCAG	2 cut(s)	257, 451
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	2 cut(s)	82, 328
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	128
BspMI	ACCTGC	2 cut(s)	554, 668
BspPI	GGATC	2 cut(s)	488, 728
BspT104I	TTCGAA	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	572
BsrGI	TGTACA	2 cut(s)	585, 702
BsrI	ACTGG	2 cut(s)	498, 614
BssECI	CCNNGG	1 cut(s)	726
BssHII	GCGCGC	1 cut(s)	326
BssMI	GATC	4 cut(s)	259, 439, 493, 733
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	195, 684
Bst4CI	ACNGT	2 cut(s)	582, 637
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	162
BstAUI	TGTACA	2 cut(s)	585, 702
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	328, 653
BstDEI	CTNAG	2 cut(s)	244, 459
BstF5I	GGATG	3 cut(s)	344, 400, 736
BstFNI	CGCG	2 cut(s)	82, 328
BstHHI	GCGC	3 cut(s)	98, 328, 330
BstKTI	GATC	4 cut(s)	262, 442, 496, 736
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	259, 439, 493, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 176, 317, 348, 648
BstNI	CCWGG	2 cut(s)	195, 684
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	4 cut(s)	193, 427, 682, 725
BstSFI	CTRYAG	1 cut(s)	124
BstUI	CGCG	2 cut(s)	82, 328
BstV1I	GCAGC	3 cut(s)	7, 138, 667
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
Bsu15I	ATCGAT	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	344, 400, 736
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	2 cut(s)	554, 668
Cac8I	GCNNGC	2 cut(s)	328, 653
CaiI	CAGNNNCTG	2 cut(s)	123, 683
CfoI	GCGC	3 cut(s)	98, 328, 330
Cfr13I	GGNCC	3 cut(s)	57, 425, 680
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	2 cut(s)	88, 331
Csp6I	GTAC	2 cut(s)	586, 703
CviAII	CATG	2 cut(s)	589, 762
CviJI	RGCY	8 cut(s)	120, 189, 311, 362, 410, 616, 651, 725
CviKI_1	RGCY	8 cut(s)	120, 189, 311, 362, 410, 616, 651, 725
CviQI	GTAC	2 cut(s)	586, 703
DdeI	CTNAG	2 cut(s)	244, 459
DpnI	GATC	4 cut(s)	261, 441, 495, 735
DpnII	GATC	4 cut(s)	259, 439, 493, 733
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	57, 425, 680
EcoO109I	RGGNCCY	2 cut(s)	57, 680
EcoRII	CCWGG	2 cut(s)	193, 682
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	2 cut(s)	592, 765
FaiI	YATR	7 cut(s)	389, 489, 513, 590, 671, 698, 763
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	2 cut(s)	588, 761
Fnu4HI	GCNGC	5 cut(s)	21, 127, 352, 649, 656
FokI	GGATG	3 cut(s)	351, 407, 743
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	5 cut(s)	21, 127, 352, 649, 656
GlaI	GCGC	3 cut(s)	97, 327, 329
GluI	GCNGC	5 cut(s)	21, 127, 352, 649, 656
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	2 cut(s)	429, 726
HgaI	GACGC	2 cut(s)	88, 331
HhaI	GCGC	3 cut(s)	98, 328, 330
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	592, 765
Hin6I	GCGC	3 cut(s)	96, 326, 328
HinP1I	GCGC	3 cut(s)	96, 326, 328
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	6 cut(s)	42, 135, 203, 242, 277, 398
HpaII	CCGG	2 cut(s)	429, 726
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	9 cut(s)	47, 72, 105, 264, 282, 289, 338, 460, 756
Hpy188III	TCNNGA	3 cut(s)	147, 571, 737
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	4 cut(s)	82, 164, 167, 511
HpyAV	CCTTC	3 cut(s)	144, 244, 376
HpyCH4III	ACNGT	2 cut(s)	582, 637
HpyCH4IV	ACGT	2 cut(s)	114, 162
HpyCH4V	TGCA	5 cut(s)	23, 126, 320, 491, 677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 176, 317, 348, 648
HpyF3I	CTNAG	2 cut(s)	244, 459
HpySE526I	ACGT	2 cut(s)	114, 162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	592, 765
HspAI	GCGC	3 cut(s)	96, 326, 328
Kzo9I	GATC	4 cut(s)	259, 439, 493, 733
Lsp1109I	GCAGC	3 cut(s)	7, 138, 667
LweI	GCATC	2 cut(s)	107, 329
MaeII	ACGT	2 cut(s)	114, 162
MaeIII	GTNAC	3 cut(s)	7, 500, 538
MalI	GATC	4 cut(s)	261, 441, 495, 735
MboI	GATC	4 cut(s)	259, 439, 493, 733
MboII	GAAGA	3 cut(s)	22, 198, 201
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	198, 470, 666
MluI	ACGCGT	1 cut(s)	80
MlyI	GAGTC	4 cut(s)	36, 144, 212, 236
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	70, 385, 586, 638
MseI	TTAA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	20, 311
MspI	CCGG	2 cut(s)	429, 726
MspR9I	CCNGG	4 cut(s)	195, 429, 684, 727
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	195, 684
MvnI	CGCG	2 cut(s)	82, 328
MwoI	GCNNNNNNNGC	5 cut(s)	126, 176, 317, 348, 648
NciI	CCSGG	2 cut(s)	429, 727
NdeII	GATC	4 cut(s)	259, 439, 493, 733
NlaIII	CATG	2 cut(s)	592, 765
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	500, 538
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	212
PauI	GCGCGC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	277, 398
PkrI	GCNGC	5 cut(s)	22, 128, 353, 650, 657
PleI	GAGTC	4 cut(s)	36, 143, 211, 236
PpsI	GAGTC	4 cut(s)	36, 143, 211, 236
PpuMI	RGGWCCY	2 cut(s)	57, 680
Psp5II	RGGWCCY	2 cut(s)	57, 680
Psp6I	CCWGG	2 cut(s)	193, 682
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	2 cut(s)	193, 682
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	3 cut(s)	57, 425, 680
PspPPI	RGGWCCY	2 cut(s)	57, 680
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	2 cut(s)	123, 683
PsuI	RGATCY	1 cut(s)	493
PteI	GCGCGC	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	587, 704
RsaNI	GTAC	2 cut(s)	586, 703
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	5 cut(s)	21, 127, 352, 649, 656
Sau3AI	GATC	4 cut(s)	259, 439, 493, 733
Sau96I	GGNCC	3 cut(s)	57, 425, 680
SchI	GAGTC	4 cut(s)	36, 144, 212, 236
ScrFI	CCNGG	4 cut(s)	195, 429, 684, 727
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	2 cut(s)	107, 329
SfcI	CTRYAG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	3 cut(s)	57, 425, 680
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	198, 470, 666
SsiI	CCGC	5 cut(s)	5, 18, 179, 352, 648
StyD4I	CCNGG	4 cut(s)	193, 427, 682, 725
TaaI	ACNGT	2 cut(s)	582, 637
TaiI	ACGT	2 cut(s)	117, 165
TaqI	TCGA	5 cut(s)	77, 138, 212, 438, 601
TasI	AATT	3 cut(s)	198, 470, 666
TatI	WGTACW	2 cut(s)	585, 702
TauI	GCSGC	2 cut(s)	354, 651
TfiI	GAWTC	2 cut(s)	277, 398
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	500, 538
TseI	GCWGC	3 cut(s)	20, 126, 655
Tsp45I	GTSAC	2 cut(s)	500, 538
TspDTI	ATGAA	2 cut(s)	411, 528
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	3 cut(s)	57, 425, 680
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	765
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.