Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

44844846 .. 44866531

Gene Structure 21686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGGTCACTTGCTCTCATCACCGCCCCTCTCCCCTCTCTCAGATCCCGAACTGCCTTCCCGAAATCTCTATCACTAAAACCGAGTCGCCGCTTCCAGCTGTGGTTCCATTACTCCGGCGAAGCAGCCATGGCAAGGCATGGCGATGAAGCCTCTGATCGCAAGAGATTTTGTAGGTTCAACAACGATATAATGGATGAATCTGATGTGGCTCTTGTTTTGATTGGATCTGAAGTCTATGCAGATCCCAGTCACTCATCGGATGAGGCATTAAGATTGGTTTCTGTTGTTGTCACAACCACATTCACTCCCAAAGCAGGTCTCAAGACAATACAATTGTACATGGAGGGTTATCGACAAGACTGGAAGCTTTCCTTTGAACAGGACACCGTGAGCAGAGGCGGCTGGTATATCATTATAAAACAGGGTGGAATTAAAGTTGCAGGTCCTGGTAAAAGTAACAACTTGTGCATTCACAAAGACAAAGAAGCTGGGAATCCAGATATCAAAAATATCCACAAAGCATGTTGTGGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

179

Amino Acids

19.9

Weight (kDa)

9.06

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
Acc36I	ACCTGC	2 cut(s)	308, 434
AciI	CCGC	3 cut(s)	24, 91, 402
AclWI	GGATC	3 cut(s)	39, 235, 239
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	135, 317
AgsI	TTSAA	2 cut(s)	181, 380
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	3 cut(s)	100, 370, 491
AluI	AGCT	3 cut(s)	100, 370, 491
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	3 cut(s)	39, 235, 239
AlwNI	CAGNNNCTG	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	326
BfuAI	ACCTGC	2 cut(s)	308, 434
BisI	GCNGC	3 cut(s)	91, 126, 403
BlsI	GCNGC	3 cut(s)	92, 127, 404
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	450
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 317
Bse1I	ACTGG	2 cut(s)	249, 368
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	202, 268
BseLI	CCNNNNNNNGG	2 cut(s)	135, 317
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	249, 368
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	135, 317
BsmAI	GTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	471
Bso31I	GGTCTC	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	44, 157, 227, 244
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	24, 91, 402
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	107
BspMI	ACCTGC	2 cut(s)	308, 434
BspPI	GGATC	3 cut(s)	39, 235, 239
BspTNI	GGTCTC	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	249, 368
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	44, 157, 227, 244
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	391
BstAUI	TGTACA	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	202, 268
BstKTI	GATC	4 cut(s)	47, 160, 230, 247
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	4 cut(s)	44, 157, 227, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 402
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	3 cut(s)	44, 227, 244
BstYI	RGATCY	3 cut(s)	44, 227, 244
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	202, 268
BveI	ACCTGC	2 cut(s)	308, 434
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	4 cut(s)	130, 140, 343, 525
CviJI	RGCY	7 cut(s)	100, 128, 152, 212, 370, 405, 491
CviKI_1	RGCY	7 cut(s)	100, 128, 152, 212, 370, 405, 491
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	46, 159, 229, 246
DpnII	GATC	4 cut(s)	44, 157, 227, 244
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	133, 143, 346, 528
FaiI	YATR	8 cut(s)	131, 141, 191, 240, 344, 411, 419, 526
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	4 cut(s)	129, 139, 342, 524
Fnu4HI	GCNGC	3 cut(s)	91, 126, 403
FokI	GGATG	2 cut(s)	209, 275
Fsp4HI	GCNGC	3 cut(s)	91, 126, 403
GluI	GCNGC	3 cut(s)	91, 126, 403
GsaI	CCCAGC	1 cut(s)	495
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	4 cut(s)	133, 143, 346, 528
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	85, 200, 496
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	5 cut(s)	44, 157, 205, 232, 262
Hpy188III	TCNNGA	4 cut(s)	48, 61, 325, 500
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	242, 443, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 402
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	133, 143, 346, 528
Kzo9I	GATC	4 cut(s)	44, 157, 227, 244
Lsp1109I	GCAGC	1 cut(s)	137
MaeIII	GTNAC	4 cut(s)	6, 251, 292, 458
MalI	GATC	4 cut(s)	46, 159, 229, 246
MboI	GATC	4 cut(s)	44, 157, 227, 244
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	3 cut(s)	44, 227, 244
MluCI	AATT	2 cut(s)	335, 432
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	39, 46, 163, 259, 340, 392
MseI	TTAA	3 cut(s)	272, 435, 538
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	131, 402
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	44, 157, 227, 244
NlaIII	CATG	4 cut(s)	133, 143, 346, 528
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	6, 251, 292
NspI	RCATGY	1 cut(s)	528
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	200, 496
PkrI	GCNGC	3 cut(s)	92, 127, 404
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	446
PspPPI	RGGWCCY	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	3 cut(s)	44, 227, 244
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	272, 435, 538
SatI	GCNGC	3 cut(s)	91, 126, 403
Sau3AI	GATC	4 cut(s)	44, 157, 227, 244
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	6 cut(s)	102, 179, 322, 372, 448, 493
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	335, 432
SsiI	CCGC	3 cut(s)	24, 91, 402
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	335, 432
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	93, 405
TfiI	GAWTC	2 cut(s)	200, 496
Tru1I	TTAA	3 cut(s)	272, 435, 538
Tru9I	TTAA	3 cut(s)	272, 435, 538
TseFI	GTSAC	3 cut(s)	6, 251, 292
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	3 cut(s)	6, 251, 292
TspDTI	ATGAA	2 cut(s)	162, 213
VpaK11BI	GGWCC	1 cut(s)	446
XceI	RCATGY	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.