Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

44618288 .. 44621147

Gene Structure 2860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCTTTTGGAAACAATCTTTAAGGCTCACAGAGATACAGTAGTGGCGTTTAGGGATGCAAGTAAGAGTAACCAGTTCGATGGTCCATGGATACGACAGGAGGGTTATCGACAAGACTGGAAGCTTTCCTTTGAACAGGACATCATGAGCAGAGGCGGCTGGTATATCAATATAAAAGACAAAGAAGCTGGGGATGATCCAGATATCAAAGATATCCTCAAAGCATGTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

78

Amino Acids

9.14

Weight (kDa)

5.01

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	2 cut(s)	124, 188
AluI	AGCT	2 cut(s)	124, 188
AlwI	GGATC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	83
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BccI	CCATC	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	73, 122
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	61, 199
BseNI	ACTGG	2 cut(s)	73, 122
BseYI	CCCAGC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	144
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	73, 122
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	61, 199
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	61, 199
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	83
CviAII	CATG	3 cut(s)	87, 145, 225
CviJI	RGCY	4 cut(s)	26, 124, 159, 188
CviKI_1	RGCY	4 cut(s)	26, 124, 159, 188
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	86
Eco32I	GATATC	2 cut(s)	205, 214
Eco47I	GGWCC	1 cut(s)	83
EcoRV	GATATC	2 cut(s)	205, 214
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	90, 148, 228
FaiI	YATR	6 cut(s)	88, 146, 165, 173, 226, 235
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	3 cut(s)	86, 144, 224
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	68, 206
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
GsaI	CCCAGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	90, 148, 228
HindIII	AAGCTT	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	145, 200
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	90, 148, 228
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	83, 86, 103, 122, 145, 174, 213
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	94, 146, 227
MseI	TTAA	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	90, 148, 228
NspI	RCATGY	1 cut(s)	228
PagI	TCATGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	83
SetI	ASST	2 cut(s)	126, 190
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	83
SsiI	CCGC	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	78, 109
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	83
XceI	RCATGY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.