Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00362

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

37623 .. 43508

Gene Structure 5886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGCCATCTCTGCCATCTGCAAAGAACAACTCAAAAGGACATCTTCTTCCCAACAGACAGTTCCCTCCAAATTGATGATGGCGAAAAGCAATTAGAGGTTCCGATCGGGCAGCTTAGAAAAATGGTTCAAGTTATAACAACGTACGTGTTGATTACCATACCTCTCTGGTGTAGGCTTAAAGCAAACTGGACAAGCCTATCAGTTGCCACTAATTTGGTGCATGCAAAATCATTCTCTGAGCAAACCGAATTCAAAGGAGAATCAGTTAATGCAGATCCCAGGCACTCATCGTATGAGGCATTAAGATTTGTTTCTGGTGTCACAACCACATTCACTCTCAAAGGATTCTCATATAAGTTGCTTCCACCACATTCCAGACAGGAGGGTTATCGACAAGACTGGAAGCTTTCCTTTGAACAGGACATCATGAGCAGAGGCGGCTGCAGGGTGCTAGTTGCAAGTCCTGGTAAAAGTAACATCTTGTACATTCACAAGGACAAAGAAGCTGGGGATGATCCAGATATCAAAGATATCCTCAAAGCATGTTGTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

186

Amino Acids

21.02

Weight (kDa)

8.25

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	2 cut(s)	272, 512
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	146, 488
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	131, 256, 419
AjnI	CCWGG	2 cut(s)	281, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	3 cut(s)	115, 409, 509
AluI	AGCT	3 cut(s)	115, 409, 509
AlwI	GGATC	2 cut(s)	272, 512
ApeKI	GCWGC	2 cut(s)	112, 444
ApoI	RAATTY	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	124, 431
BccI	CCATC	3 cut(s)	15, 24, 74
BciT130I	CCWGG	2 cut(s)	283, 468
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	3 cut(s)	113, 442, 445
BlsI	GCNGC	3 cut(s)	114, 443, 446
Bme1390I	CCNGG	2 cut(s)	283, 468
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	283, 468
BsaAI	YACGTR	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse1I	ACTGG	2 cut(s)	194, 407
BseBI	CCWGG	2 cut(s)	283, 468
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	194, 407
BseXI	GCAGC	2 cut(s)	124, 431
BseYI	CCCAGC	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	108
BsiWI	CGTACG	1 cut(s)	144
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	105, 277, 517
BspACI	CCGC	1 cut(s)	441
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	449
BspPI	GGATC	2 cut(s)	272, 512
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	194, 407
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	105, 277, 517
Bst2UI	CCWGG	2 cut(s)	283, 468
Bst4CI	ACNGT	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	116, 240
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	3 cut(s)	108, 280, 520
BstMBI	GATC	3 cut(s)	105, 277, 517
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 441
BstNI	CCWGG	2 cut(s)	283, 468
BstNSI	RCATGY	2 cut(s)	227, 549
BstSCI	CCNGG	2 cut(s)	281, 466
BstSFI	CTRYAG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	124, 431
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	145, 487
CviAII	CATG	3 cut(s)	224, 430, 546
CviJI	RGCY	7 cut(s)	6, 115, 178, 198, 409, 444, 509
CviKI_1	RGCY	7 cut(s)	6, 115, 178, 198, 409, 444, 509
CviQI	GTAC	2 cut(s)	145, 487
DdeI	CTNAG	2 cut(s)	116, 240
DpnI	GATC	3 cut(s)	107, 279, 519
DpnII	GATC	3 cut(s)	105, 277, 517
Eco32I	GATATC	2 cut(s)	526, 535
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	281, 466
EcoRV	GATATC	2 cut(s)	526, 535
FaeI	CATG	3 cut(s)	227, 433, 549
FaiI	YATR	8 cut(s)	137, 161, 225, 297, 355, 357, 431, 547
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 398, 430
FatI	CATG	3 cut(s)	223, 429, 545
Fnu4HI	GCNGC	3 cut(s)	113, 442, 445
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	113, 442, 445
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	3 cut(s)	113, 442, 445
GsaI	CCCAGC	1 cut(s)	513
Hin1II	CATG	3 cut(s)	227, 433, 549
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	263, 348
Hpy188I	TCNGA	2 cut(s)	105, 241
Hpy188III	TCNNGA	3 cut(s)	378, 430, 521
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	143, 147
HpyCH4V	TGCA	6 cut(s)	22, 223, 227, 275, 447, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 441
HpyF3I	CTNAG	2 cut(s)	116, 240
HpySE526I	ACGT	2 cut(s)	143, 147
Hsp92II	CATG	3 cut(s)	227, 433, 549
Kzo9I	GATC	3 cut(s)	105, 277, 517
Lsp1109I	GCAGC	2 cut(s)	124, 431
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	2 cut(s)	143, 147
MaeIII	GTNAC	2 cut(s)	322, 476
MalI	GATC	3 cut(s)	107, 279, 519
MboI	GATC	3 cut(s)	105, 277, 517
MboII	GAAGA	2 cut(s)	37, 40
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	4 cut(s)	72, 92, 214, 251
MnlI	CCTC	7 cut(s)	77, 91, 174, 292, 379, 431, 548
MseI	TTAA	4 cut(s)	180, 270, 305, 559
MspR9I	CCNGG	2 cut(s)	283, 468
MvaI	CCWGG	2 cut(s)	283, 468
MwoI	GCNNNNNNNGC	2 cut(s)	12, 441
NdeII	GATC	3 cut(s)	105, 277, 517
NlaIII	CATG	3 cut(s)	227, 433, 549
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	2 cut(s)	227, 549
PaeI	GCATGC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	263, 348
Pfl23II	CGTACG	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	114, 443, 446
Ple19I	CGATCG	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	281, 466
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	281, 466
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	108
RsaI	GTAC	2 cut(s)	146, 488
RsaNI	GTAC	2 cut(s)	145, 487
SaqAI	TTAA	4 cut(s)	180, 270, 305, 559
SatI	GCNGC	3 cut(s)	113, 442, 445
Sau3AI	GATC	3 cut(s)	105, 277, 517
ScrFI	CCNGG	2 cut(s)	283, 468
SetI	ASST	7 cut(s)	102, 117, 146, 150, 166, 411, 511
SfcI	CTRYAG	1 cut(s)	445
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	4 cut(s)	72, 92, 214, 251
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	281, 466
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	2 cut(s)	146, 150
TaqI	TCGA	1 cut(s)	394
TasI	AATT	4 cut(s)	72, 92, 214, 251
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	2 cut(s)	263, 348
Tru1I	TTAA	4 cut(s)	180, 270, 305, 559
Tru9I	TTAA	4 cut(s)	180, 270, 305, 559
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	112, 444
Tsp45I	GTSAC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	2 cut(s)	227, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.